Wall clock time and date at job start Mon Mar 30 2020 01:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38672 * 120.79048 * 2 1 4 4 C 1.38181 * 119.16190 * 180.22832 * 3 2 1 5 5 N 1.31886 * 120.76837 * 359.79144 * 4 3 2 6 6 C 1.31852 * 121.72215 * 359.97438 * 5 4 3 7 7 C 1.38224 * 120.76740 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.42322 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47043 * 219.99815 * 8 7 6 10 10 C 1.52995 * 109.47458 * 99.99670 * 8 7 6 11 11 N 1.46906 * 109.46893 * 339.99819 * 8 7 6 12 12 C 1.46901 * 110.99793 * 205.00308 * 11 8 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46828 * 90.00241 * 21 19 17 23 23 H 1.48495 * 109.46968 * 209.99597 * 21 19 17 24 24 H 1.48499 * 109.47437 * 330.00066 * 21 19 17 25 25 H 1.09001 * 109.47406 * 270.24785 * 1 2 3 26 26 H 1.09004 * 109.47226 * 30.25288 * 1 2 3 27 27 H 1.09005 * 109.47274 * 150.25082 * 1 2 3 28 28 H 1.08004 * 120.42055 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.61808 * 179.76723 * 4 3 2 30 30 H 1.08000 * 119.61978 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47056 * 60.00167 * 10 8 7 32 32 H 1.09000 * 109.47395 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.47112 * 300.00104 * 10 8 7 34 34 H 1.00899 * 110.99995 * 81.04706 * 11 8 7 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 8 37 37 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 39 39 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1520 -0.0048 5 7 4.2403 0.0001 -0.0052 6 6 3.5983 -1.1516 -0.0006 7 6 2.2166 -1.1909 0.0054 8 6 1.4908 -2.5116 0.0112 9 1 0.6230 -2.4521 -0.6458 10 6 1.0318 -2.8351 1.4344 11 7 2.3935 -3.5685 -0.4643 12 6 1.6359 -4.6921 -1.0315 13 6 2.5933 -5.7538 -1.5080 14 8 3.7890 -5.5908 -1.3866 15 7 2.1208 -6.8850 -2.0682 16 6 3.0515 -7.9173 -2.5309 17 6 2.2744 -9.0699 -3.1129 18 1 1.1952 -9.0365 -3.1362 19 6 2.9412 -10.1670 -3.6157 20 7 4.2554 -10.2079 -3.5869 21 14 1.9778 -11.5959 -4.3364 22 1 1.7681 -11.3689 -5.7890 23 1 2.7380 -12.8559 -4.1372 24 1 0.6618 -11.6989 -3.6564 25 1 -0.3634 0.0044 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6967 2.1378 0.0004 29 1 4.1582 2.0753 -0.0087 30 1 4.1584 -2.0750 -0.0007 31 1 0.3620 -2.0509 1.7872 32 1 0.5064 -3.7901 1.4385 33 1 1.8995 -2.8945 2.0913 34 1 3.0051 -3.8812 0.2748 35 1 1.0374 -4.3395 -1.8715 36 1 0.9798 -5.1101 -0.2680 37 1 1.1645 -7.0154 -2.1649 38 1 3.7075 -7.4993 -3.2946 39 1 3.6502 -8.2696 -1.6909 40 1 4.7245 -10.9796 -3.9409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783003174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:50 Heat of formation + Delta-G solvation = -35.729320 kcal Electronic energy + Delta-G solvation = -20623.019852 eV Core-core repulsion = 17436.144922 eV Total energy + Delta-G solvation = -3186.874930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38088 -40.46002 -37.83060 -36.09785 -34.87168 -34.33344 -32.66500 -30.52033 -29.46332 -28.70545 -26.91822 -25.07024 -24.30635 -22.89398 -21.76982 -21.34949 -19.06444 -17.81716 -17.68906 -17.17545 -17.02833 -16.73827 -16.30276 -15.88129 -15.49059 -15.14320 -15.11365 -14.81107 -14.33291 -14.02331 -13.90229 -13.87392 -13.73993 -13.49671 -13.26765 -13.07986 -12.92435 -12.82669 -12.68429 -12.41057 -12.22238 -11.92046 -11.48165 -10.80051 -10.73949 -10.34353 -10.27003 -9.84237 -9.80164 -9.38287 -8.28764 -6.45565 0.25883 0.39047 1.43315 1.45881 1.57018 1.81540 2.29138 2.49380 2.90245 3.06179 3.23622 3.57449 3.84505 3.91029 3.96509 4.02619 4.11256 4.25658 4.38497 4.40470 4.50468 4.61341 4.71710 4.75213 4.85403 4.92879 4.98878 5.08807 5.13559 5.20544 5.25131 5.32761 5.48733 5.50086 5.70017 5.84749 5.86080 6.00739 6.27049 6.66299 6.96242 7.14738 7.24318 7.54812 8.83532 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036835 B = 0.002860 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.970178 B = 9788.020500 C =10211.006768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.045 4.045 3 C -0.173 4.173 4 C 0.077 3.923 5 N -0.528 5.528 6 C 0.099 3.901 7 C -0.130 4.130 8 C 0.133 3.867 9 H 0.111 0.889 10 C -0.174 4.174 11 N -0.688 5.688 12 C 0.059 3.941 13 C 0.490 3.510 14 O -0.594 6.594 15 N -0.708 5.708 16 C 0.267 3.733 17 C -0.555 4.555 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.253 1.253 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.142 0.858 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.346 0.654 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.409 0.591 38 H -0.017 1.017 39 H -0.014 1.014 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 21.351 9.522 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.193 4.193 4 C -0.080 4.080 5 N -0.237 5.237 6 C -0.058 4.058 7 C -0.132 4.132 8 C 0.023 3.977 9 H 0.129 0.871 10 C -0.233 4.233 11 N -0.320 5.320 12 C -0.072 4.072 13 C 0.278 3.722 14 O -0.474 6.474 15 N -0.359 5.359 16 C 0.144 3.856 17 C -0.593 4.593 18 H 0.104 0.896 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.808 3.192 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.177 1.177 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.182 0.818 29 H 0.189 0.811 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.245 0.755 38 H 0.001 0.999 39 H 0.004 0.996 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.893 21.636 8.946 26.727 hybrid contribution -0.828 -1.425 0.244 1.667 sum -13.721 20.210 9.190 26.099 Atomic orbital electron populations 1.20963 0.87907 1.04457 1.03986 1.20519 0.98352 0.91750 0.94680 1.22317 0.95052 0.99712 1.02179 1.23200 0.93108 0.96203 0.95455 1.67679 1.42738 0.99503 1.13793 1.22616 0.92575 0.95653 0.94922 1.20783 0.94571 0.95926 1.01942 1.20429 0.93809 0.86902 0.96530 0.87138 1.22447 1.02059 1.03251 0.95517 1.60145 1.21181 1.11035 1.39615 1.21783 0.93894 0.89570 1.02002 1.21501 0.89821 0.83312 0.77612 1.90654 1.19024 1.79699 1.58070 1.46157 1.11211 1.18124 1.60429 1.18499 0.89111 0.85679 0.92313 1.21636 0.94396 1.02215 1.41009 0.89622 1.26098 0.95900 1.01922 0.95871 1.70145 1.09054 1.31658 1.46270 0.85149 0.78581 0.76777 0.78659 1.19665 1.21081 1.17695 0.89008 0.89588 0.90236 0.81837 0.81058 0.84097 0.89937 0.90922 0.93221 0.83414 0.85925 0.89024 0.75499 0.99885 0.99589 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.06 71.23 0.65 -0.35 16 2 C -0.04 -0.72 5.92 -19.67 -0.12 -0.83 16 3 C -0.17 -2.69 9.82 22.36 0.22 -2.47 16 4 C 0.08 1.56 11.18 84.67 0.95 2.51 16 5 N -0.53 -14.75 10.36 -195.85 -2.03 -16.78 16 6 C 0.10 2.71 10.49 84.69 0.89 3.60 16 7 C -0.13 -2.72 5.10 -19.77 -0.10 -2.82 16 8 C 0.13 2.35 2.28 44.17 0.10 2.45 16 9 H 0.11 1.54 6.17 -2.39 -0.01 1.53 16 10 C -0.17 -2.41 9.11 71.98 0.66 -1.75 16 11 N -0.69 -17.25 4.73 -499.44 -2.36 -19.61 16 12 C 0.06 1.44 5.97 85.56 0.51 1.95 16 13 C 0.49 19.09 7.87 87.66 0.69 19.78 16 14 O -0.59 -29.57 16.20 -3.03 -0.05 -29.62 16 15 N -0.71 -29.21 5.55 -466.78 -2.59 -31.80 16 16 C 0.27 14.72 5.43 85.63 0.46 15.18 16 17 C -0.55 -30.07 9.28 25.60 0.24 -29.83 16 18 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.00 0.08 5.46 84.66 0.46 0.55 16 20 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 21 Si 0.99 42.19 29.54 68.60 2.03 44.22 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 25 H 0.09 0.54 7.89 -2.39 -0.02 0.52 16 26 H 0.09 0.51 8.10 -2.38 -0.02 0.49 16 27 H 0.08 0.61 6.26 -2.38 -0.01 0.60 16 28 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 29 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.14 4.30 6.86 -2.91 -0.02 4.29 16 31 H 0.08 0.85 7.28 -2.39 -0.02 0.83 16 32 H 0.07 0.88 7.45 -2.39 -0.02 0.86 16 33 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 34 H 0.35 9.53 7.73 -89.69 -0.69 8.84 16 35 H 0.12 2.41 8.06 -2.39 -0.02 2.39 16 36 H 0.09 1.64 7.44 -2.39 -0.02 1.62 16 37 H 0.41 13.49 8.32 -92.71 -0.77 12.72 16 38 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.93 335.93 0.48 -77.44 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -0.40 Total: 24.69 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.60 Total: 7.95 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.69 Total: -124.69 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.93 0.48 -77.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783003174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.715 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds