Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35357 * 126.38523 * 2 1 4 4 C 1.41496 * 105.50358 * 180.02562 * 3 2 1 5 5 C 1.47716 * 126.51780 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99706 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 H 1.08001 * 120.00037 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99824 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00502 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99575 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47237 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46786 * 120.00449 * 13 11 9 16 16 H 1.48502 * 109.47225 * 239.99913 * 13 11 9 17 17 N 1.31806 * 106.96639 * 0.24099 * 4 3 2 18 18 N 1.28474 * 110.06948 * 359.59417 * 17 4 3 19 19 C 1.46496 * 124.88516 * 180.13271 * 18 17 4 20 20 H 1.09000 * 109.47375 * 180.33397 * 19 18 17 21 21 C 1.53001 * 109.47199 * 300.33059 * 19 18 17 22 22 C 1.53001 * 109.47200 * 60.32904 * 19 18 17 23 23 C 1.52995 * 117.49676 * 128.62455 * 22 19 18 24 24 C 1.53002 * 60.00178 * 252.50995 * 23 22 19 25 25 H 1.08997 * 109.47049 * 89.97351 * 1 2 3 26 26 H 1.09005 * 109.46632 * 209.97558 * 1 2 3 27 27 H 1.08994 * 109.46941 * 329.96809 * 1 2 3 28 28 H 1.08003 * 127.24889 * 0.04433 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 0.96997 * 120.00009 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47138 * 59.99637 * 21 19 18 34 34 H 1.08997 * 109.47860 * 180.02562 * 21 19 18 35 35 H 1.09010 * 109.46995 * 300.00206 * 21 19 18 36 36 H 1.09002 * 115.54826 * 274.33132 * 22 19 18 37 37 H 1.08998 * 117.50420 * 0.02562 * 23 22 19 38 38 H 1.09010 * 117.50077 * 145.02235 * 23 22 19 39 39 H 1.08998 * 117.49944 * 252.51867 * 24 23 22 40 40 H 1.08994 * 117.50134 * 107.48693 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8213 2.5957 -0.0020 7 7 6.0730 0.7609 -0.0014 8 6 7.3072 1.5502 -0.0083 9 6 8.4959 0.6239 -0.0137 10 1 8.3469 -0.4458 -0.0118 11 6 9.7736 1.1420 -0.0201 12 7 9.9551 2.4445 -0.0209 13 14 11.2470 -0.0063 -0.0262 14 1 10.7769 -1.4149 -0.0235 15 1 12.0621 0.2408 -1.2426 16 1 12.0735 0.2425 1.1823 17 7 3.5421 -0.7296 -0.0062 18 7 2.3081 -1.0871 -0.0006 19 6 1.8377 -2.4745 -0.0015 20 1 0.7477 -2.4886 -0.0018 21 6 2.3572 -3.1884 -1.2511 22 6 2.3567 -3.1899 1.2474 23 6 1.3366 -3.9365 2.1091 24 6 1.9448 -2.6242 2.6080 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 2.0057 2.1260 0.0007 29 1 6.1171 -0.2081 -0.0013 30 1 7.3320 2.1782 -0.8989 31 1 7.3411 2.1795 0.8811 32 1 10.8540 2.8090 -0.0258 33 1 3.4471 -3.1742 -1.2509 34 1 2.0069 -4.2205 -1.2521 35 1 1.9874 -2.6787 -2.1409 36 1 3.3548 -3.6197 1.1622 37 1 0.2957 -3.9185 1.7861 38 1 1.6633 -4.8581 2.5911 39 1 2.6718 -2.6824 3.4181 40 1 1.3041 -1.7425 2.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787630212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = 53.016810 kcal Electronic energy + Delta-G solvation = -21223.344114 eV Core-core repulsion = 18040.317505 eV Total energy + Delta-G solvation = -3183.026609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55972 -38.52854 -37.90864 -34.09276 -33.72189 -32.76109 -32.13148 -29.99987 -27.49300 -26.81526 -24.85699 -23.45179 -22.68874 -21.92372 -20.94235 -20.28087 -18.85351 -17.27961 -16.76771 -16.09588 -15.52548 -15.41708 -14.99654 -14.91699 -14.12169 -14.08882 -13.87042 -13.28320 -13.20393 -12.99792 -12.90585 -12.53209 -12.36888 -12.03497 -11.90485 -11.86111 -11.69387 -11.44189 -10.90370 -10.86068 -10.72868 -10.55618 -10.48185 -10.26215 -9.30702 -9.18954 -8.86125 -8.72854 -8.66171 -7.75557 -6.09795 -4.15655 1.95841 2.38549 2.41015 3.28414 3.35160 3.39072 3.53601 3.96018 4.15482 4.18113 4.40809 4.43730 4.49337 4.58802 4.68005 4.81674 4.84781 5.03122 5.14855 5.26418 5.27747 5.28534 5.30769 5.49381 5.58945 5.61756 5.74638 5.77984 5.80104 5.90490 5.96834 6.09817 6.67855 6.95236 7.39856 7.53422 7.60223 7.75893 8.04018 8.18718 8.76129 8.87528 9.20003 9.50566 11.00681 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.004134 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.939129 B = 6771.318492 C = 7672.952094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.003 4.003 3 C -0.181 4.181 4 C -0.003 4.003 5 C 0.584 3.416 6 O -0.551 6.551 7 N -0.696 5.696 8 C 0.248 3.752 9 C -0.539 4.539 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 N -0.253 5.253 18 N -0.276 5.276 19 C 0.179 3.821 20 H 0.105 0.895 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.168 4.168 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.397 0.603 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.794 -13.599 1.232 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.209 4.209 4 C -0.164 4.164 5 C 0.367 3.633 6 O -0.428 6.428 7 N -0.344 5.344 8 C 0.128 3.872 9 C -0.578 4.578 10 H 0.082 0.918 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 N -0.088 5.088 18 N -0.065 5.065 19 C 0.078 3.922 20 H 0.122 0.878 21 C -0.217 4.217 22 C -0.185 4.185 23 C -0.206 4.206 24 C -0.205 4.205 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.175 0.825 29 H 0.230 0.770 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.022 -13.665 1.219 25.103 hybrid contribution 0.463 -0.269 0.016 0.536 sum -20.559 -13.935 1.235 24.867 Atomic orbital electron populations 1.20301 0.87299 1.03352 1.02917 1.21288 0.95028 0.87009 1.09348 1.21491 0.90895 0.99239 1.09272 1.22293 0.95660 0.89575 1.08903 1.16995 0.81959 0.86464 0.77915 1.90739 1.86895 1.13028 1.52171 1.46350 1.06234 1.10907 1.70899 1.19167 0.78694 0.91496 0.97892 1.21276 0.90591 0.93165 1.52743 0.91810 1.24941 0.99034 0.95241 0.94794 1.69987 1.22309 1.10860 1.49254 0.86366 0.82169 0.80727 0.77686 1.19639 1.20827 1.20828 1.73514 1.01492 1.14916 1.18877 1.45559 1.02874 1.06380 1.51726 1.21071 0.98768 0.76394 0.95917 0.87761 1.22109 1.03707 1.00419 0.95489 1.22584 1.00850 1.04179 0.90935 1.23030 0.97881 0.96527 1.03153 1.22899 1.03620 0.97077 0.96893 0.90666 0.91742 0.89730 0.82487 0.77005 0.95309 0.95304 0.92565 0.90372 0.90306 0.91777 0.86332 0.88624 0.88162 0.88242 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.92 36.01 0.36 -0.26 16 2 C 0.00 -0.04 6.92 -82.21 -0.57 -0.61 16 3 C -0.18 -2.89 10.73 -39.37 -0.42 -3.31 16 4 C 0.00 -0.07 7.13 -82.77 -0.59 -0.66 16 5 C 0.58 13.53 7.83 -12.39 -0.10 13.44 16 6 O -0.55 -14.48 16.93 5.30 0.09 -14.39 16 7 N -0.70 -16.57 5.55 -62.47 -0.35 -16.92 16 8 C 0.25 6.95 5.43 -5.19 -0.03 6.92 16 9 C -0.54 -15.30 9.28 -34.44 -0.32 -15.62 16 10 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 N -0.25 -4.23 11.33 33.42 0.38 -3.85 16 18 N -0.28 -3.58 2.92 -50.66 -0.15 -3.73 16 19 C 0.18 1.63 3.13 -67.93 -0.21 1.42 16 20 H 0.10 0.69 6.30 -51.93 -0.33 0.36 16 21 C -0.16 -1.35 9.34 37.16 0.35 -1.00 16 22 C -0.17 -1.49 5.21 -90.62 -0.47 -1.96 16 23 C -0.17 -1.11 10.18 -26.73 -0.27 -1.39 16 24 C -0.17 -1.53 10.12 -26.73 -0.27 -1.80 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.37 7.03 -51.93 -0.36 0.01 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.16 2.36 8.06 -52.48 -0.42 1.94 16 29 H 0.40 8.65 8.05 -40.82 -0.33 8.32 16 30 H 0.03 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.12 1.17 8.11 -51.93 -0.42 0.75 16 37 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -34.17 344.46 -7.81 -41.98 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.04 Total: 4.40 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.65 Total: -3.11 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.62 Total: -50.51 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.17 -7.81 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.999 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds