Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35357 * 126.38523 * 2 1 4 4 C 1.41496 * 105.50358 * 180.02562 * 3 2 1 5 5 C 1.47716 * 126.51780 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99706 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 H 1.08001 * 120.00037 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99824 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00502 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99575 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47237 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46786 * 120.00449 * 13 11 9 16 16 H 1.48502 * 109.47225 * 239.99913 * 13 11 9 17 17 N 1.31806 * 106.96639 * 0.24099 * 4 3 2 18 18 N 1.28474 * 110.06948 * 359.59417 * 17 4 3 19 19 C 1.46496 * 124.88516 * 180.13271 * 18 17 4 20 20 H 1.09000 * 109.47375 * 180.33397 * 19 18 17 21 21 C 1.53001 * 109.47199 * 300.33059 * 19 18 17 22 22 C 1.53001 * 109.47200 * 60.32904 * 19 18 17 23 23 C 1.52995 * 117.49676 * 128.62455 * 22 19 18 24 24 C 1.53002 * 60.00178 * 252.50995 * 23 22 19 25 25 H 1.08997 * 109.47049 * 89.97351 * 1 2 3 26 26 H 1.09005 * 109.46632 * 209.97558 * 1 2 3 27 27 H 1.08994 * 109.46941 * 329.96809 * 1 2 3 28 28 H 1.08003 * 127.24889 * 0.04433 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 0.96997 * 120.00009 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47138 * 59.99637 * 21 19 18 34 34 H 1.08997 * 109.47860 * 180.02562 * 21 19 18 35 35 H 1.09010 * 109.46995 * 300.00206 * 21 19 18 36 36 H 1.09002 * 115.54826 * 274.33132 * 22 19 18 37 37 H 1.08998 * 117.50420 * 0.02562 * 23 22 19 38 38 H 1.09010 * 117.50077 * 145.02235 * 23 22 19 39 39 H 1.08998 * 117.49944 * 252.51867 * 24 23 22 40 40 H 1.08994 * 117.50134 * 107.48693 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0006 5 6 4.8765 1.3812 -0.0014 6 8 4.8213 2.5957 -0.0020 7 7 6.0730 0.7609 -0.0014 8 6 7.3072 1.5502 -0.0083 9 6 8.4959 0.6239 -0.0137 10 1 8.3469 -0.4458 -0.0118 11 6 9.7736 1.1420 -0.0201 12 7 9.9551 2.4445 -0.0209 13 14 11.2470 -0.0063 -0.0262 14 1 10.7769 -1.4149 -0.0235 15 1 12.0621 0.2408 -1.2426 16 1 12.0735 0.2425 1.1823 17 7 3.5421 -0.7296 -0.0062 18 7 2.3081 -1.0871 -0.0006 19 6 1.8377 -2.4745 -0.0015 20 1 0.7477 -2.4886 -0.0018 21 6 2.3572 -3.1884 -1.2511 22 6 2.3567 -3.1899 1.2474 23 6 1.3366 -3.9365 2.1091 24 6 1.9448 -2.6242 2.6080 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 2.0057 2.1260 0.0007 29 1 6.1171 -0.2081 -0.0013 30 1 7.3320 2.1782 -0.8989 31 1 7.3411 2.1795 0.8811 32 1 10.8540 2.8090 -0.0258 33 1 3.4471 -3.1742 -1.2509 34 1 2.0069 -4.2205 -1.2521 35 1 1.9874 -2.6787 -2.1409 36 1 3.3548 -3.6197 1.1622 37 1 0.2957 -3.9185 1.7861 38 1 1.6633 -4.8581 2.5911 39 1 2.6718 -2.6824 3.4181 40 1 1.3041 -1.7425 2.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787630212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = 29.667475 kcal Electronic energy + Delta-G solvation = -21224.356617 eV Core-core repulsion = 18040.317505 eV Total energy + Delta-G solvation = -3184.039112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.72282 -40.30438 -38.76819 -36.20733 -34.69947 -34.33330 -33.59345 -31.11338 -29.43087 -27.83899 -26.17010 -24.79107 -23.60754 -23.27920 -22.02314 -21.60934 -20.36468 -18.75717 -18.10389 -17.43121 -17.08395 -16.95265 -16.27555 -16.05893 -15.96042 -15.57320 -14.91710 -14.77480 -14.08904 -14.01845 -13.98867 -13.81104 -13.62620 -13.32168 -13.21593 -12.94379 -12.76459 -12.74600 -12.45069 -12.26065 -12.17768 -11.71042 -11.49706 -11.38468 -11.20372 -11.11481 -10.84032 -10.17615 -9.85030 -9.79543 -8.31068 -6.48008 0.59199 1.15250 1.40828 1.43074 1.45857 1.56842 2.29969 2.43428 2.52764 2.89251 3.03353 3.21399 3.59718 3.74507 3.75951 3.91519 4.03756 4.09129 4.18048 4.39635 4.49979 4.67089 4.71295 4.74677 4.78296 4.82957 4.97704 5.03085 5.05677 5.07964 5.12494 5.19234 5.20495 5.25592 5.39931 5.42632 5.63790 5.80487 5.98031 6.60183 6.72631 7.03950 7.18861 7.35567 8.81717 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.004134 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.939129 B = 6771.318492 C = 7672.952094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.207 4.207 4 C -0.042 4.042 5 C 0.583 3.417 6 O -0.592 6.592 7 N -0.694 5.694 8 C 0.266 3.734 9 C -0.558 4.558 10 H 0.078 0.922 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.988 3.012 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.275 1.275 17 N -0.263 5.263 18 N -0.262 5.262 19 C 0.170 3.830 20 H 0.145 0.855 21 C -0.157 4.157 22 C -0.182 4.182 23 C -0.132 4.132 24 C -0.189 4.189 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.407 0.593 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.270 0.730 33 H 0.050 0.950 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.188 -17.081 1.179 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.235 4.235 4 C -0.200 4.200 5 C 0.369 3.631 6 O -0.473 6.473 7 N -0.343 5.343 8 C 0.143 3.857 9 C -0.596 4.596 10 H 0.096 0.904 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.810 3.190 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.201 1.201 17 N -0.100 5.100 18 N -0.052 5.052 19 C 0.072 3.928 20 H 0.162 0.838 21 C -0.215 4.215 22 C -0.201 4.201 23 C -0.170 4.170 24 C -0.227 4.227 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.175 0.825 29 H 0.242 0.758 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.443 -17.184 1.167 29.090 hybrid contribution 1.070 0.760 0.049 1.313 sum -22.374 -16.424 1.216 27.781 Atomic orbital electron populations 1.20556 0.82979 1.05434 1.04859 1.21945 0.97194 0.85389 1.05668 1.21656 0.90148 1.00609 1.11096 1.21678 0.94616 0.90635 1.13095 1.17576 0.82974 0.86405 0.76184 1.90688 1.87728 1.15037 1.53799 1.46113 1.05524 1.11025 1.71594 1.18664 0.81050 0.91430 0.94518 1.21583 0.90917 0.93740 1.53325 0.90377 1.26064 1.02585 0.97067 0.93620 1.70138 1.23551 1.13291 1.49733 0.85075 0.77302 0.78651 0.77956 1.18018 1.20042 1.20064 1.73424 1.03884 1.13620 1.19037 1.46095 1.01792 1.08262 1.49077 1.21613 1.00868 0.74080 0.96256 0.83786 1.22115 1.02002 1.02266 0.95080 1.22545 1.01279 1.05390 0.90858 1.23156 0.98480 0.95268 1.00050 1.22904 1.04264 0.98895 0.96607 0.88584 0.88763 0.88615 0.82521 0.75803 0.98892 0.98921 0.92064 0.93063 0.87163 0.91794 0.88064 0.85815 0.87205 0.89704 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.92 71.24 0.71 -0.15 16 2 C 0.02 0.52 6.92 41.40 0.29 0.81 16 3 C -0.21 -6.66 10.73 22.41 0.24 -6.42 16 4 C -0.04 -1.66 7.13 42.46 0.30 -1.36 16 5 C 0.58 28.89 7.83 86.75 0.68 29.57 16 6 O -0.59 -33.53 16.93 -3.95 -0.07 -33.59 16 7 N -0.69 -35.21 5.55 -469.81 -2.61 -37.81 16 8 C 0.27 15.93 5.43 85.63 0.46 16.39 16 9 C -0.56 -32.63 9.28 25.60 0.24 -32.40 16 10 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 13 Si 0.99 44.18 29.54 68.60 2.03 46.21 16 14 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 N -0.26 -8.86 11.33 -48.18 -0.55 -9.41 16 18 N -0.26 -6.33 2.92 -314.20 -0.92 -7.25 16 19 C 0.17 2.53 3.13 44.99 0.14 2.67 16 20 H 0.14 1.05 6.30 -2.39 -0.02 1.03 16 21 C -0.16 -2.23 9.34 71.98 0.67 -1.56 16 22 C -0.18 -2.81 5.21 -10.79 -0.06 -2.87 16 23 C -0.13 -1.21 10.18 30.59 0.31 -0.89 16 24 C -0.19 -3.07 10.12 30.60 0.31 -2.76 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.51 7.03 -2.38 -0.02 0.49 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.16 4.88 8.06 -2.91 -0.02 4.85 16 29 H 0.41 18.65 8.05 -92.71 -0.75 17.91 16 30 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.10 1.92 8.11 -2.39 -0.02 1.90 16 37 H 0.12 0.49 8.05 -2.39 -0.02 0.47 16 38 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -80.35 344.46 3.23 -77.13 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.29 Total: 20.45 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 4.76 Total: 1.85 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.78 Total: -112.05 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.07 Total: -33.59 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.35 3.23 -77.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.793 kcal (2) G-P(sol) polarization free energy of solvation -80.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds