Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35371 * 126.38047 * 2 1 4 4 C 1.41507 * 105.49866 * 180.26108 * 3 2 1 5 5 C 1.47710 * 126.51794 * 179.76024 * 4 3 2 6 6 O 1.21576 * 119.99664 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00280 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00414 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47401 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99937 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99975 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00101 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47269 * 90.00315 * 13 11 9 15 15 H 1.48509 * 109.47311 * 210.00379 * 13 11 9 16 16 H 1.48496 * 109.47326 * 330.00357 * 13 11 9 17 17 N 1.31808 * 106.96607 * 359.76245 * 4 3 2 18 18 N 1.28468 * 110.07387 * 359.97438 * 17 4 3 19 19 C 1.46502 * 124.88774 * 179.97438 * 18 17 4 20 20 H 1.09003 * 109.47175 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.46660 * 60.03152 * 19 18 17 22 22 C 1.52989 * 109.47178 * 300.03016 * 19 18 17 23 23 C 1.53000 * 117.50008 * 248.61886 * 22 19 18 24 24 C 1.52997 * 60.00347 * 252.51154 * 23 22 19 25 25 H 1.08997 * 109.47179 * 270.13308 * 1 2 3 26 26 H 1.08992 * 109.47618 * 30.13413 * 1 2 3 27 27 H 1.09005 * 109.47194 * 150.13901 * 1 2 3 28 28 H 1.07992 * 127.25130 * 0.02562 * 3 2 1 29 29 H 0.97000 * 119.99759 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.47352 * 300.00936 * 8 7 5 31 31 H 1.09004 * 109.46480 * 60.00470 * 8 7 5 32 32 H 0.97000 * 119.99994 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.46996 * 179.97438 * 21 19 18 34 34 H 1.09001 * 109.47295 * 299.99801 * 21 19 18 35 35 H 1.09001 * 109.47711 * 60.00004 * 21 19 18 36 36 H 1.09004 * 115.56709 * 34.30620 * 22 19 18 37 37 H 1.09002 * 117.49696 * 0.02562 * 23 22 19 38 38 H 1.09002 * 117.50343 * 145.02258 * 23 22 19 39 39 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 40 40 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0899 0.0000 4 6 3.6320 0.5855 -0.0062 5 6 4.8764 1.3813 -0.0136 6 8 4.8212 2.5958 -0.0152 7 7 6.0730 0.7611 -0.0185 8 6 7.3071 1.5504 -0.0264 9 6 8.4958 0.6241 -0.0313 10 1 8.3469 -0.4455 -0.0292 11 6 9.7735 1.1422 -0.0395 12 7 9.9549 2.4449 -0.0426 13 14 11.2469 -0.0059 -0.0463 14 1 11.6293 -0.3123 -1.4481 15 1 12.3867 0.6473 0.6462 16 1 10.8962 -1.2655 0.6576 17 7 3.5420 -0.7295 -0.0042 18 7 2.3081 -1.0870 0.0031 19 6 1.8377 -2.4745 0.0068 20 1 0.7478 -2.4886 0.0126 21 6 2.3636 -3.1878 1.2540 22 6 2.3505 -3.1901 -1.2444 23 6 1.3204 -3.5849 -2.3046 24 6 1.9642 -4.6594 -1.4262 25 1 -0.3633 0.0024 1.0276 26 1 -0.3634 0.8887 -0.5159 27 1 -0.3634 -0.8913 -0.5117 28 1 2.0056 2.1260 0.0004 29 1 6.1170 -0.2079 -0.0176 30 1 7.3318 2.1774 -0.9177 31 1 7.3409 2.1807 0.8623 32 1 10.8538 2.8094 -0.0480 33 1 2.0132 -4.2201 1.2570 34 1 3.4535 -3.1737 1.2483 35 1 1.9983 -2.6780 2.1454 36 1 3.3370 -2.8825 -1.5913 37 1 0.2774 -3.3344 -2.1108 38 1 1.6291 -3.5370 -3.3489 39 1 2.6966 -5.3184 -1.8925 40 1 1.3452 -5.1162 -0.6540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787630213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = 53.575211 kcal Electronic energy + Delta-G solvation = -21103.423656 eV Core-core repulsion = 17920.421261 eV Total energy + Delta-G solvation = -3183.002395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.56548 -38.55929 -38.00933 -34.09908 -33.69827 -32.75492 -32.13510 -29.89271 -27.49946 -26.82910 -25.08470 -23.49207 -22.67335 -21.87293 -20.89631 -20.23765 -18.89305 -17.38704 -16.87605 -16.05270 -15.61336 -15.10173 -15.01772 -14.89849 -14.15913 -14.09951 -13.86313 -13.38487 -13.19531 -13.12072 -12.94141 -12.55530 -12.46428 -12.10751 -11.85813 -11.82841 -11.70641 -11.37955 -10.93071 -10.84541 -10.80590 -10.56407 -10.40970 -10.26224 -9.32610 -9.20049 -8.87450 -8.74123 -8.65834 -7.76240 -6.09751 -4.15771 1.93152 2.37692 2.42649 3.29332 3.34971 3.38138 3.39791 4.00708 4.14227 4.18511 4.39457 4.43832 4.52633 4.54821 4.65848 4.76178 4.90623 4.99624 5.14640 5.21496 5.26339 5.30072 5.31729 5.45706 5.54471 5.60001 5.72378 5.75663 5.82860 5.89999 5.98168 6.08996 6.66479 6.93735 7.39310 7.52584 7.59900 7.75306 8.03794 8.16427 8.75300 8.86935 9.19071 9.50352 11.00670 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.004121 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.719883 B = 6792.603013 C = 7913.244270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.000 4.000 3 C -0.181 4.181 4 C -0.002 4.002 5 C 0.584 3.416 6 O -0.550 6.550 7 N -0.696 5.696 8 C 0.248 3.752 9 C -0.540 4.540 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.887 5.887 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 N -0.258 5.258 18 N -0.278 5.278 19 C 0.182 3.818 20 H 0.104 0.896 21 C -0.160 4.160 22 C -0.168 4.168 23 C -0.177 4.177 24 C -0.166 4.166 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.158 0.842 29 H 0.396 0.604 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.758 -14.039 -0.709 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C -0.209 4.209 4 C -0.162 4.162 5 C 0.366 3.634 6 O -0.428 6.428 7 N -0.344 5.344 8 C 0.128 3.872 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.093 5.093 18 N -0.067 5.067 19 C 0.081 3.919 20 H 0.122 0.878 21 C -0.218 4.218 22 C -0.187 4.187 23 C -0.214 4.214 24 C -0.203 4.203 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.176 0.824 29 H 0.230 0.770 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.984 -14.099 -0.698 25.291 hybrid contribution 0.442 -0.287 -0.059 0.530 sum -20.542 -14.386 -0.757 25.090 Atomic orbital electron populations 1.20299 0.87218 1.03451 1.02896 1.21298 0.95084 0.86924 1.09032 1.21507 0.90857 0.99283 1.09293 1.22306 0.95714 0.89519 1.08708 1.16988 0.81942 0.86468 0.77954 1.90741 1.86877 1.13002 1.52135 1.46353 1.06239 1.10913 1.70879 1.19165 0.78661 0.91488 0.97905 1.21234 0.90604 0.93130 1.52888 0.91860 1.24940 0.99025 0.95249 0.94779 1.69983 1.22421 1.10862 1.49150 0.86415 0.81743 0.80567 0.78186 1.20495 1.21028 1.19752 1.73491 1.01494 1.15017 1.19254 1.45473 1.02899 1.06406 1.51887 1.21034 0.98713 0.76346 0.95849 0.87807 1.22113 1.03888 1.00340 0.95464 1.22595 1.01352 0.97904 0.96810 1.23081 0.97887 1.03469 0.96979 1.22966 1.03614 0.90907 1.02818 0.90675 0.89683 0.91641 0.82399 0.77009 0.95305 0.95281 0.92506 0.90409 0.90293 0.91813 0.86108 0.88670 0.88392 0.88125 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.92 36.00 0.36 -0.26 16 2 C 0.00 0.00 6.92 -82.21 -0.57 -0.57 16 3 C -0.18 -2.91 10.73 -39.36 -0.42 -3.33 16 4 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 5 C 0.58 13.53 7.83 -12.39 -0.10 13.43 16 6 O -0.55 -14.44 16.93 5.30 0.09 -14.35 16 7 N -0.70 -16.56 5.55 -62.47 -0.35 -16.90 16 8 C 0.25 6.96 5.43 -5.20 -0.03 6.93 16 9 C -0.54 -15.31 9.28 -34.44 -0.32 -15.63 16 10 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 N -0.26 -4.34 11.21 33.42 0.37 -3.96 16 18 N -0.28 -3.66 3.04 -50.66 -0.15 -3.81 16 19 C 0.18 1.67 3.17 -67.94 -0.22 1.46 16 20 H 0.10 0.70 6.31 -51.93 -0.33 0.37 16 21 C -0.16 -1.38 9.21 37.16 0.34 -1.04 16 22 C -0.17 -1.53 5.34 -90.62 -0.48 -2.02 16 23 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 24 C -0.17 -1.10 9.74 -26.73 -0.26 -1.36 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.39 7.03 -51.93 -0.37 0.02 16 28 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.40 8.63 8.05 -40.82 -0.33 8.30 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.08 0.47 7.29 -51.93 -0.38 0.09 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 1.43 7.99 -51.93 -0.42 1.02 16 37 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.50 7.61 -51.93 -0.39 0.10 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -34.16 342.61 -7.78 -41.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.97 Total: 4.34 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.66 Total: -2.84 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.61 Total: -50.68 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.16 -7.78 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.518 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds