Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35371 * 126.38047 * 2 1 4 4 C 1.41507 * 105.49866 * 180.26108 * 3 2 1 5 5 C 1.47710 * 126.51794 * 179.76024 * 4 3 2 6 6 O 1.21576 * 119.99664 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00280 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00414 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47401 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99937 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99975 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00101 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47269 * 90.00315 * 13 11 9 15 15 H 1.48509 * 109.47311 * 210.00379 * 13 11 9 16 16 H 1.48496 * 109.47326 * 330.00357 * 13 11 9 17 17 N 1.31808 * 106.96607 * 359.76245 * 4 3 2 18 18 N 1.28468 * 110.07387 * 359.97438 * 17 4 3 19 19 C 1.46502 * 124.88774 * 179.97438 * 18 17 4 20 20 H 1.09003 * 109.47175 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.46660 * 60.03152 * 19 18 17 22 22 C 1.52989 * 109.47178 * 300.03016 * 19 18 17 23 23 C 1.53000 * 117.50008 * 248.61886 * 22 19 18 24 24 C 1.52997 * 60.00347 * 252.51154 * 23 22 19 25 25 H 1.08997 * 109.47179 * 270.13308 * 1 2 3 26 26 H 1.08992 * 109.47618 * 30.13413 * 1 2 3 27 27 H 1.09005 * 109.47194 * 150.13901 * 1 2 3 28 28 H 1.07992 * 127.25130 * 0.02562 * 3 2 1 29 29 H 0.97000 * 119.99759 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.47352 * 300.00936 * 8 7 5 31 31 H 1.09004 * 109.46480 * 60.00470 * 8 7 5 32 32 H 0.97000 * 119.99994 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.46996 * 179.97438 * 21 19 18 34 34 H 1.09001 * 109.47295 * 299.99801 * 21 19 18 35 35 H 1.09001 * 109.47711 * 60.00004 * 21 19 18 36 36 H 1.09004 * 115.56709 * 34.30620 * 22 19 18 37 37 H 1.09002 * 117.49696 * 0.02562 * 23 22 19 38 38 H 1.09002 * 117.50343 * 145.02258 * 23 22 19 39 39 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 40 40 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0899 0.0000 4 6 3.6320 0.5855 -0.0062 5 6 4.8764 1.3813 -0.0136 6 8 4.8212 2.5958 -0.0152 7 7 6.0730 0.7611 -0.0185 8 6 7.3071 1.5504 -0.0264 9 6 8.4958 0.6241 -0.0313 10 1 8.3469 -0.4455 -0.0292 11 6 9.7735 1.1422 -0.0395 12 7 9.9549 2.4449 -0.0426 13 14 11.2469 -0.0059 -0.0463 14 1 11.6293 -0.3123 -1.4481 15 1 12.3867 0.6473 0.6462 16 1 10.8962 -1.2655 0.6576 17 7 3.5420 -0.7295 -0.0042 18 7 2.3081 -1.0870 0.0031 19 6 1.8377 -2.4745 0.0068 20 1 0.7478 -2.4886 0.0126 21 6 2.3636 -3.1878 1.2540 22 6 2.3505 -3.1901 -1.2444 23 6 1.3204 -3.5849 -2.3046 24 6 1.9642 -4.6594 -1.4262 25 1 -0.3633 0.0024 1.0276 26 1 -0.3634 0.8887 -0.5159 27 1 -0.3634 -0.8913 -0.5117 28 1 2.0056 2.1260 0.0004 29 1 6.1170 -0.2079 -0.0176 30 1 7.3318 2.1774 -0.9177 31 1 7.3409 2.1807 0.8623 32 1 10.8538 2.8094 -0.0480 33 1 2.0132 -4.2201 1.2570 34 1 3.4535 -3.1737 1.2483 35 1 1.9983 -2.6780 2.1454 36 1 3.3370 -2.8825 -1.5913 37 1 0.2774 -3.3344 -2.1108 38 1 1.6291 -3.5370 -3.3489 39 1 2.6966 -5.3184 -1.8925 40 1 1.3452 -5.1162 -0.6540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787630213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = 30.085615 kcal Electronic energy + Delta-G solvation = -21104.442242 eV Core-core repulsion = 17920.421261 eV Total energy + Delta-G solvation = -3184.020980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.73742 -40.31269 -38.84971 -36.21429 -34.70505 -34.31747 -33.59880 -30.99481 -29.42683 -27.85058 -26.30068 -24.93768 -23.60453 -23.16346 -22.04546 -21.47441 -20.37785 -18.76302 -18.26625 -17.45426 -17.12200 -16.97651 -16.21407 -15.99940 -15.81162 -15.56400 -14.82590 -14.79168 -14.09266 -14.06205 -14.00615 -13.98491 -13.68658 -13.36525 -13.26329 -12.97070 -12.82370 -12.73120 -12.32847 -12.26214 -12.11514 -11.73707 -11.52575 -11.42098 -11.14307 -11.05098 -10.83151 -10.18454 -9.86814 -9.80779 -8.31093 -6.48201 0.56204 1.13621 1.40689 1.44256 1.46025 1.55743 2.29737 2.41517 2.52537 2.81641 3.03220 3.24573 3.60921 3.72657 3.85944 3.91144 3.98405 4.07401 4.25883 4.36482 4.49759 4.65264 4.67354 4.78539 4.79730 4.82554 4.99818 5.02671 5.05038 5.07529 5.16538 5.18882 5.24750 5.25956 5.38151 5.41808 5.63096 5.80117 5.96599 6.59534 6.71042 7.01467 7.18259 7.34495 8.81469 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.004121 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.719883 B = 6792.603013 C = 7913.244270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.207 4.207 4 C -0.041 4.041 5 C 0.583 3.417 6 O -0.591 6.591 7 N -0.694 5.694 8 C 0.266 3.734 9 C -0.559 4.559 10 H 0.078 0.922 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.988 3.012 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.258 1.258 17 N -0.268 5.268 18 N -0.265 5.265 19 C 0.174 3.826 20 H 0.145 0.855 21 C -0.158 4.158 22 C -0.193 4.193 23 C -0.171 4.171 24 C -0.148 4.148 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.407 0.593 30 H -0.007 1.007 31 H -0.006 1.006 32 H 0.271 0.729 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.220 -17.531 -0.589 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.235 4.235 4 C -0.199 4.199 5 C 0.369 3.631 6 O -0.471 6.471 7 N -0.343 5.343 8 C 0.144 3.856 9 C -0.597 4.597 10 H 0.096 0.904 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.810 3.190 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.182 1.182 17 N -0.105 5.105 18 N -0.055 5.055 19 C 0.075 3.925 20 H 0.162 0.838 21 C -0.216 4.216 22 C -0.212 4.212 23 C -0.208 4.208 24 C -0.185 4.185 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.177 0.823 29 H 0.242 0.758 30 H 0.011 0.989 31 H 0.012 0.988 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.473 -17.628 -0.582 29.361 hybrid contribution 1.073 0.739 -0.116 1.308 sum -22.400 -16.889 -0.697 28.062 Atomic orbital electron populations 1.20561 0.82820 1.05538 1.04890 1.21986 0.97299 0.85305 1.05399 1.21684 0.90082 1.00686 1.11071 1.21705 0.94719 0.90572 1.12898 1.17558 0.82943 0.86408 0.76230 1.90690 1.87707 1.14979 1.53750 1.46119 1.05539 1.11034 1.71570 1.18663 0.81004 0.91424 0.94547 1.21550 0.90937 0.93737 1.53469 0.90390 1.26065 1.02577 0.97076 0.93594 1.70137 1.23619 1.13293 1.49644 0.85122 0.76861 0.78290 0.78724 1.19416 1.20420 1.18200 1.73405 1.03897 1.13756 1.19395 1.46009 1.01842 1.08341 1.49282 1.21558 1.00800 0.73976 0.96129 0.83783 1.22132 1.02063 1.02276 0.95116 1.22432 1.00491 1.00385 0.97877 1.23204 0.98428 1.02944 0.96187 1.23088 1.03184 0.89416 1.02817 0.88519 0.88540 0.88668 0.82333 0.75814 0.98909 0.98840 0.92051 0.87139 0.93176 0.91800 0.89874 0.86281 0.89164 0.88337 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.92 71.24 0.71 -0.16 16 2 C 0.02 0.58 6.92 41.40 0.29 0.86 16 3 C -0.21 -6.71 10.73 22.41 0.24 -6.47 16 4 C -0.04 -1.62 7.13 42.46 0.30 -1.32 16 5 C 0.58 28.96 7.83 86.75 0.68 29.64 16 6 O -0.59 -33.46 16.93 -3.95 -0.07 -33.52 16 7 N -0.69 -35.29 5.55 -469.84 -2.61 -37.90 16 8 C 0.27 15.95 5.43 85.63 0.46 16.42 16 9 C -0.56 -32.74 9.28 25.60 0.24 -32.51 16 10 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 11 C 0.01 0.39 5.46 84.65 0.46 0.85 16 12 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 13 Si 0.99 44.19 29.54 68.60 2.03 46.22 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 17 N -0.27 -9.17 11.21 -48.17 -0.54 -9.71 16 18 N -0.26 -6.57 3.04 -314.20 -0.96 -7.52 16 19 C 0.17 2.66 3.17 44.99 0.14 2.80 16 20 H 0.14 1.08 6.31 -2.39 -0.02 1.07 16 21 C -0.16 -2.29 9.21 71.98 0.66 -1.63 16 22 C -0.19 -3.12 5.34 -10.80 -0.06 -3.18 16 23 C -0.17 -1.88 10.18 30.59 0.31 -1.57 16 24 C -0.15 -1.45 9.74 30.60 0.30 -1.15 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.53 7.03 -2.38 -0.02 0.51 16 28 H 0.16 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.41 18.71 8.05 -92.71 -0.75 17.96 16 30 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.11 0.87 7.29 -2.38 -0.02 0.85 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 2.00 7.99 -2.38 -0.02 1.98 16 37 H 0.12 0.76 8.05 -2.39 -0.02 0.74 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.12 0.60 7.61 -2.39 -0.02 0.58 16 Total: -1.00 -80.69 342.61 3.18 -77.51 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.30 Total: 19.94 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.74 Total: 2.58 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.82 Total: -112.73 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.07 Total: -33.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -80.69 3.18 -77.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.597 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds