Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38884 * 120.75207 * 2 1 4 4 C 1.38021 * 119.32869 * 180.23509 * 3 2 1 5 5 N 1.31965 * 120.85651 * 359.76492 * 4 3 2 6 6 C 1.32400 * 121.62498 * 0.02562 * 5 4 3 7 7 N 1.39000 * 119.70578 * 179.97438 * 6 5 4 8 8 N 1.40106 * 119.99914 * 359.97438 * 7 6 5 9 9 C 1.34778 * 119.99885 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.52993 * 109.47411 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47436 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47435 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47414 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00388 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47340 * 90.00274 * 19 17 15 21 21 H 1.48504 * 109.47023 * 210.00302 * 19 17 15 22 22 H 1.48504 * 109.47142 * 329.99777 * 19 17 15 23 23 C 1.38302 * 120.74178 * 179.74981 * 2 1 3 24 24 H 1.09000 * 109.46544 * 270.25139 * 1 2 3 25 25 H 1.09004 * 109.46684 * 30.24556 * 1 2 3 26 26 H 1.09001 * 109.46941 * 150.24706 * 1 2 3 27 27 H 1.08002 * 120.33271 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.56484 * 179.78900 * 4 3 2 29 29 H 0.96994 * 120.00442 * 179.97438 * 7 6 5 30 30 H 0.96994 * 120.00235 * 359.97438 * 8 7 6 31 31 H 1.09007 * 109.46707 * 299.99629 * 11 9 8 32 32 H 1.09000 * 109.47380 * 59.99262 * 11 9 8 33 33 H 1.09007 * 109.46677 * 299.99396 * 12 11 9 34 34 H 1.09000 * 109.47656 * 59.99180 * 12 11 9 35 35 H 1.08999 * 109.47091 * 299.99820 * 13 12 11 36 36 H 1.09008 * 109.46965 * 59.99430 * 13 12 11 37 37 H 1.08999 * 109.47595 * 299.99866 * 14 13 12 38 38 H 1.09000 * 109.47332 * 59.99682 * 14 13 12 39 39 H 0.97000 * 120.00295 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.45659 * 0.02857 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2172 1.1936 0.0000 4 6 3.5970 1.1593 -0.0049 5 7 4.2455 0.0100 -0.0050 6 6 3.6048 -1.1487 -0.0008 7 7 4.3280 -2.3357 -0.0016 8 7 5.7287 -2.3026 -0.0073 9 6 6.4299 -3.4536 -0.0075 10 8 5.8485 -4.5179 -0.0033 11 6 7.9365 -3.4181 -0.0130 12 6 8.4804 -4.8481 -0.0128 13 6 10.0099 -4.8120 -0.0190 14 6 10.5538 -6.2420 -0.0181 15 6 12.0604 -6.2065 -0.0249 16 1 12.5782 -5.2587 -0.0290 17 6 12.7778 -7.3839 -0.0248 18 7 12.1473 -8.5381 -0.0193 19 14 14.6452 -7.3398 -0.0325 20 1 15.1459 -7.3246 1.3655 21 1 15.1659 -8.5421 -0.7317 22 1 15.1087 -6.1178 -0.7376 23 6 2.2140 -1.1887 0.0052 24 1 -0.3632 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 1.6950 2.1389 -0.0004 28 1 4.1530 2.0852 -0.0084 29 1 3.8631 -3.1870 0.0018 30 1 6.1937 -1.4514 -0.0111 31 1 8.2843 -2.8977 -0.9054 32 1 8.2909 -2.8939 0.8745 33 1 8.1326 -5.3689 0.8794 34 1 8.1260 -5.3719 -0.9005 35 1 10.3574 -4.2913 -0.9113 36 1 10.3646 -4.2881 0.8687 37 1 10.2064 -6.7624 0.8744 38 1 10.1991 -6.7663 -0.9055 39 1 12.6520 -9.3665 -0.0196 40 1 1.6937 -2.1351 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807034979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = 7.907340 kcal Electronic energy + Delta-G solvation = -19723.993845 eV Core-core repulsion = 16539.011142 eV Total energy + Delta-G solvation = -3184.982703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70978 -39.64953 -36.39832 -34.88342 -34.07828 -32.81067 -32.35613 -29.99687 -28.68034 -28.06297 -25.52576 -23.76636 -22.72680 -21.73998 -20.69226 -19.99096 -18.16309 -17.77071 -16.43187 -16.19387 -16.02293 -15.85140 -15.83081 -14.93511 -14.51115 -14.45253 -14.12530 -13.96464 -13.51596 -13.09074 -12.92091 -12.62797 -12.41091 -12.03686 -11.77833 -11.72063 -11.62224 -10.98309 -10.55451 -10.50809 -10.42061 -10.09010 -9.85394 -9.82764 -9.67853 -9.59657 -9.24174 -8.98748 -8.29610 -7.70713 -5.94438 -3.96903 0.91670 1.05134 1.76971 2.58976 3.34897 3.40895 3.44139 3.54635 3.60126 4.29391 4.39712 4.49737 4.62194 4.77796 4.84954 4.99533 5.11618 5.20583 5.27998 5.32249 5.34511 5.40966 5.52922 5.62589 5.79262 6.03261 6.11865 6.19949 6.27926 6.51895 6.58677 6.82761 6.98799 7.03054 7.20235 7.37901 7.74874 7.80253 7.90470 8.06853 8.26333 8.48596 9.10797 9.66710 11.16856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061056 B = 0.002136 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.485207 B =13105.335972 C =13527.462342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.005 3.995 3 C -0.239 4.239 4 C 0.157 3.843 5 N -0.554 5.554 6 C 0.409 3.591 7 N -0.520 5.520 8 N -0.523 5.523 9 C 0.510 3.490 10 O -0.540 6.540 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.235 4.235 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.440 0.560 30 H 0.431 0.569 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.063 21.235 0.063 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.003 4.003 3 C -0.262 4.262 4 C 0.000 4.000 5 N -0.273 5.273 6 C 0.173 3.827 7 N -0.248 5.248 8 N -0.271 5.271 9 C 0.298 3.702 10 O -0.415 6.415 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.262 4.262 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.285 0.715 30 H 0.273 0.727 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.332 20.226 0.055 30.130 hybrid contribution 0.166 0.051 0.016 0.174 sum -22.167 20.277 0.071 30.042 Atomic orbital electron populations 1.20848 0.90215 1.03382 1.02982 1.20007 0.96385 0.92156 0.91785 1.21712 0.95363 0.98471 1.10659 1.22364 0.91711 0.94572 0.91342 1.67040 1.40855 0.97419 1.22012 1.18209 0.87573 0.85621 0.91298 1.43254 0.94440 1.06207 1.80922 1.45139 0.94079 1.10923 1.76964 1.21478 0.90708 0.82249 0.75768 1.90719 1.71570 1.29502 1.49697 1.21753 0.87839 1.02564 1.04643 1.21478 0.97236 0.92196 1.03156 1.21656 0.91581 1.01340 1.00244 1.19098 0.95273 0.90049 0.97346 1.21282 0.91937 0.92246 1.50377 0.92717 1.25048 0.98451 0.95651 0.95476 1.69976 1.35341 0.97205 1.50946 0.86604 0.85933 0.77459 0.78038 1.20721 1.21272 1.19919 1.21009 0.91845 0.99640 1.13667 0.90350 0.90874 0.90969 0.85064 0.82544 0.71527 0.72738 0.88562 0.88557 0.91636 0.91637 0.93325 0.93335 0.96566 0.96559 0.93055 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.06 36.01 0.36 -0.16 16 2 C 0.00 0.03 5.91 -104.36 -0.62 -0.58 16 3 C -0.24 -1.65 9.81 -39.42 -0.39 -2.04 16 4 C 0.16 1.26 11.17 -17.57 -0.20 1.06 16 5 N -0.55 -5.77 9.37 -12.44 -0.12 -5.89 16 6 C 0.41 4.29 7.59 -155.02 -1.18 3.12 16 7 N -0.52 -5.86 6.42 31.13 0.20 -5.66 16 8 N -0.52 -6.13 6.29 31.22 0.20 -5.93 16 9 C 0.51 7.17 7.95 -10.98 -0.09 7.08 16 10 O -0.54 -9.58 15.82 5.56 0.09 -9.49 16 11 C -0.13 -1.65 5.70 -27.89 -0.16 -1.81 16 12 C -0.10 -1.80 4.50 -26.74 -0.12 -1.92 16 13 C -0.11 -2.26 5.15 -26.74 -0.14 -2.39 16 14 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.24 -2.00 9.64 -39.22 -0.38 -2.38 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 26 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 27 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 28 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 29 H 0.44 4.79 7.99 -182.60 -1.46 3.33 16 30 H 0.43 4.34 7.95 -182.60 -1.45 2.89 16 31 H 0.10 1.07 8.14 -51.92 -0.42 0.64 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -34.67 344.64 -10.53 -45.20 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.36 Total: -0.06 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -3.45 Total: -13.48 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 1.02 Total: -44.32 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.67 -10.53 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807034979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.107 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds