Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38884 * 120.75207 * 2 1 4 4 C 1.38021 * 119.32869 * 180.23509 * 3 2 1 5 5 N 1.31965 * 120.85651 * 359.76492 * 4 3 2 6 6 C 1.32400 * 121.62498 * 0.02562 * 5 4 3 7 7 N 1.39000 * 119.70578 * 179.97438 * 6 5 4 8 8 N 1.40106 * 119.99914 * 359.97438 * 7 6 5 9 9 C 1.34778 * 119.99885 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.52993 * 109.47411 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47436 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47435 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47414 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00388 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00265 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47340 * 90.00274 * 19 17 15 21 21 H 1.48504 * 109.47023 * 210.00302 * 19 17 15 22 22 H 1.48504 * 109.47142 * 329.99777 * 19 17 15 23 23 C 1.38302 * 120.74178 * 179.74981 * 2 1 3 24 24 H 1.09000 * 109.46544 * 270.25139 * 1 2 3 25 25 H 1.09004 * 109.46684 * 30.24556 * 1 2 3 26 26 H 1.09001 * 109.46941 * 150.24706 * 1 2 3 27 27 H 1.08002 * 120.33271 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.56484 * 179.78900 * 4 3 2 29 29 H 0.96994 * 120.00442 * 179.97438 * 7 6 5 30 30 H 0.96994 * 120.00235 * 359.97438 * 8 7 6 31 31 H 1.09007 * 109.46707 * 299.99629 * 11 9 8 32 32 H 1.09000 * 109.47380 * 59.99262 * 11 9 8 33 33 H 1.09007 * 109.46677 * 299.99396 * 12 11 9 34 34 H 1.09000 * 109.47656 * 59.99180 * 12 11 9 35 35 H 1.08999 * 109.47091 * 299.99820 * 13 12 11 36 36 H 1.09008 * 109.46965 * 59.99430 * 13 12 11 37 37 H 1.08999 * 109.47595 * 299.99866 * 14 13 12 38 38 H 1.09000 * 109.47332 * 59.99682 * 14 13 12 39 39 H 0.97000 * 120.00295 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.45659 * 0.02857 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2172 1.1936 0.0000 4 6 3.5970 1.1593 -0.0049 5 7 4.2455 0.0100 -0.0050 6 6 3.6048 -1.1487 -0.0008 7 7 4.3280 -2.3357 -0.0016 8 7 5.7287 -2.3026 -0.0073 9 6 6.4299 -3.4536 -0.0075 10 8 5.8485 -4.5179 -0.0033 11 6 7.9365 -3.4181 -0.0130 12 6 8.4804 -4.8481 -0.0128 13 6 10.0099 -4.8120 -0.0190 14 6 10.5538 -6.2420 -0.0181 15 6 12.0604 -6.2065 -0.0249 16 1 12.5782 -5.2587 -0.0290 17 6 12.7778 -7.3839 -0.0248 18 7 12.1473 -8.5381 -0.0193 19 14 14.6452 -7.3398 -0.0325 20 1 15.1459 -7.3246 1.3655 21 1 15.1659 -8.5421 -0.7317 22 1 15.1087 -6.1178 -0.7376 23 6 2.2140 -1.1887 0.0052 24 1 -0.3632 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 1.6950 2.1389 -0.0004 28 1 4.1530 2.0852 -0.0084 29 1 3.8631 -3.1870 0.0018 30 1 6.1937 -1.4514 -0.0111 31 1 8.2843 -2.8977 -0.9054 32 1 8.2909 -2.8939 0.8745 33 1 8.1326 -5.3689 0.8794 34 1 8.1260 -5.3719 -0.9005 35 1 10.3574 -4.2913 -0.9113 36 1 10.3646 -4.2881 0.8687 37 1 10.2064 -6.7624 0.8744 38 1 10.1991 -6.7663 -0.9055 39 1 12.6520 -9.3665 -0.0196 40 1 1.6937 -2.1351 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807034979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = -14.009475 kcal Electronic energy + Delta-G solvation = -19724.944229 eV Core-core repulsion = 16539.011142 eV Total energy + Delta-G solvation = -3185.933087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44393 -40.64382 -37.33675 -36.53594 -34.66636 -34.62920 -33.41051 -31.50857 -29.61164 -28.63363 -27.25253 -24.42931 -24.30040 -22.52969 -21.97599 -21.51187 -18.98471 -18.72059 -18.37441 -17.15471 -17.01508 -16.72511 -16.64818 -16.45020 -15.85996 -15.30918 -15.16800 -15.09415 -14.53122 -14.09934 -13.77203 -13.61676 -13.59057 -13.31943 -13.28592 -12.85006 -12.67899 -12.49535 -12.34436 -12.16499 -12.14194 -11.39586 -11.36433 -11.22468 -10.97228 -10.54048 -10.50354 -10.46126 -10.40370 -8.50525 -8.17998 -6.29889 0.31707 0.42582 0.90557 1.40867 1.43061 1.52131 1.54132 2.42401 2.80992 2.91981 3.14720 3.57665 3.79630 3.92936 4.02403 4.14439 4.14740 4.31771 4.42993 4.63189 4.67952 4.75528 4.82434 4.83219 4.85039 4.88155 5.00300 5.19106 5.22388 5.33197 5.37938 5.46397 5.56160 5.58706 5.79657 5.86995 5.89461 6.15870 6.26476 6.51015 6.88728 7.05090 7.32663 7.39581 8.94153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.061056 B = 0.002136 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.485207 B =13105.335972 C =13527.462342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.001 4.001 3 C -0.232 4.232 4 C 0.142 3.858 5 N -0.574 5.574 6 C 0.386 3.614 7 N -0.531 5.531 8 N -0.509 5.509 9 C 0.511 3.489 10 O -0.586 6.586 11 C -0.116 4.116 12 C -0.095 4.095 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.243 4.243 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.438 0.562 30 H 0.439 0.561 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.262 0.738 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.098 24.288 0.057 33.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.009 4.009 3 C -0.255 4.255 4 C -0.014 4.014 5 N -0.294 5.294 6 C 0.151 3.849 7 N -0.261 5.261 8 N -0.256 5.256 9 C 0.299 3.701 10 O -0.465 6.465 11 C -0.157 4.157 12 C -0.133 4.133 13 C -0.134 4.134 14 C -0.020 4.020 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.269 4.269 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.177 0.823 28 H 0.199 0.801 29 H 0.282 0.718 30 H 0.283 0.717 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.387 23.366 0.050 32.359 hybrid contribution 0.043 -0.809 0.019 0.811 sum -22.344 22.557 0.069 31.750 Atomic orbital electron populations 1.20910 0.88129 1.04355 1.03828 1.20425 0.97948 0.91775 0.90798 1.22088 0.95147 0.99559 1.08699 1.22891 0.92683 0.94705 0.91122 1.67017 1.41779 0.98003 1.22622 1.18454 0.88259 0.85467 0.92692 1.43352 0.93888 1.06675 1.82154 1.44910 0.94759 1.10580 1.75317 1.21536 0.91118 0.82069 0.75416 1.90705 1.72402 1.31166 1.52218 1.21616 0.87109 0.99552 1.07381 1.21251 0.95413 0.95253 1.01374 1.21452 0.93181 0.97222 1.01536 1.19065 0.94975 0.93517 0.94398 1.21764 0.93120 0.92891 1.50120 0.91535 1.26097 1.04370 0.95174 0.94863 1.70133 1.37677 0.98060 1.51939 0.85381 0.78805 0.77952 0.78491 1.19750 1.20985 1.18335 1.21253 0.91291 1.00886 1.13500 0.89424 0.89408 0.90553 0.82332 0.80093 0.71755 0.71708 0.85760 0.85749 0.93552 0.93554 0.91898 0.91890 0.99634 0.99627 0.92894 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.06 71.24 0.72 -0.02 16 2 C 0.00 -0.02 5.91 -19.69 -0.12 -0.13 16 3 C -0.23 -2.62 9.81 22.37 0.22 -2.40 16 4 C 0.14 1.99 11.17 84.62 0.95 2.94 16 5 N -0.57 -11.34 9.37 -193.27 -1.81 -13.15 16 6 C 0.39 7.91 7.59 133.06 1.01 8.93 16 7 N -0.53 -12.02 6.42 -55.43 -0.36 -12.38 16 8 N -0.51 -11.63 6.29 -173.53 -1.09 -12.72 16 9 C 0.51 14.21 7.95 87.66 0.70 14.91 16 10 O -0.59 -21.47 15.82 -3.02 -0.05 -21.52 16 11 C -0.12 -2.84 5.70 29.85 0.17 -2.67 16 12 C -0.09 -3.37 4.50 30.59 0.14 -3.23 16 13 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 14 C 0.02 0.97 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 16 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 17 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 18 N -0.94 -59.22 13.29 21.45 0.28 -58.93 16 19 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 C -0.24 -3.94 9.64 22.50 0.22 -3.73 16 24 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.09 0.32 8.10 -2.39 -0.02 0.30 16 26 H 0.08 0.44 8.10 -2.39 -0.02 0.42 16 27 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 28 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 29 H 0.44 9.93 7.99 -213.32 -1.71 8.22 16 30 H 0.44 8.30 7.95 -213.32 -1.70 6.61 16 31 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -77.31 344.64 1.65 -75.66 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -2.36 Total: 15.24 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 5.00 Total: -19.25 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -2.97 Total: -97.18 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -77.31 1.65 -75.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807034979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.650 kcal (2) G-P(sol) polarization free energy of solvation -77.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds