Wall clock time and date at job start Mon Mar 30 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38338 * 120.44647 * 2 1 4 4 C 1.38838 * 118.50423 * 180.02562 * 3 2 1 5 5 C 1.38067 * 119.33083 * 0.02562 * 4 3 2 6 6 N 1.31943 * 120.84908 * 359.73157 * 5 4 3 7 7 C 1.32419 * 121.62608 * 0.53702 * 6 5 4 8 8 N 1.39004 * 119.71154 * 179.74909 * 7 6 5 9 9 N 1.40105 * 119.99358 * 359.72074 * 8 7 6 10 10 C 1.34777 * 119.99775 * 179.72245 * 9 8 7 11 11 O 1.21283 * 120.00222 * 0.28016 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27576 * 10 9 8 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47353 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47600 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47646 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99463 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00445 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00395 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99434 * 20 18 16 22 22 H 1.48501 * 109.47293 * 209.99885 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99683 * 20 18 16 24 24 H 1.08999 * 109.46870 * 269.97318 * 1 2 3 25 25 H 1.08999 * 109.47183 * 29.97746 * 1 2 3 26 26 H 1.09001 * 109.46570 * 149.97315 * 1 2 3 27 27 H 1.08005 * 120.75157 * 0.04789 * 3 2 1 28 28 H 1.08004 * 120.33465 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.57407 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00798 * 179.71936 * 8 7 6 31 31 H 0.97001 * 120.00437 * 0.02562 * 9 8 7 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 35 35 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 36 36 H 1.08999 * 109.47616 * 300.00389 * 14 13 12 37 37 H 1.09003 * 109.47280 * 60.00024 * 14 13 12 38 38 H 1.08998 * 109.47382 * 300.00476 * 15 14 13 39 39 H 1.09005 * 109.46800 * 60.00677 * 15 14 13 40 40 H 0.96996 * 120.00393 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1926 0.0000 4 6 3.5956 1.1456 -0.0005 5 6 4.2308 -0.0803 -0.0016 6 7 3.5362 -1.2022 0.0032 7 6 2.2120 -1.1991 -0.0014 8 7 1.5203 -2.4047 -0.0013 9 7 2.2242 -3.6161 -0.0023 10 6 1.5535 -4.7852 0.0034 11 8 0.3407 -4.7886 0.0043 12 6 2.3106 -6.0882 0.0086 13 6 1.3196 -7.2538 0.0139 14 6 2.0882 -8.5767 0.0185 15 6 1.0973 -9.7424 0.0232 16 6 1.8543 -11.0454 0.0284 17 1 2.9343 -11.0424 0.0279 18 6 1.1683 -12.2413 0.0326 19 7 -0.1468 -12.2450 0.0327 20 14 2.1067 -13.8565 0.0398 21 1 2.3545 -14.2789 1.4417 22 1 1.3075 -14.8964 -0.6567 23 1 3.4043 -13.6781 -0.6601 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3632 -0.8898 -0.5143 27 1 1.6877 2.1391 0.0008 28 1 4.1724 2.0587 -0.0010 29 1 5.3100 -0.1215 -0.0025 30 1 0.5503 -2.4075 -0.0005 31 1 3.1942 -3.6135 -0.0027 32 1 2.9367 -6.1481 -0.8816 33 1 2.9381 -6.1403 0.8983 34 1 0.6931 -7.1941 0.9038 35 1 0.6924 -7.2016 -0.8762 36 1 2.7144 -8.6363 -0.8716 37 1 2.7157 -8.6292 0.9083 38 1 0.4707 -9.6831 0.9131 39 1 0.4702 -9.6897 -0.8669 40 1 -0.6295 -13.0863 0.0360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807388742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:15 Heat of formation + Delta-G solvation = 10.635318 kcal Electronic energy + Delta-G solvation = -19962.133690 eV Core-core repulsion = 16777.269282 eV Total energy + Delta-G solvation = -3184.864409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80075 -39.63494 -36.31597 -34.87744 -34.07668 -32.80009 -32.41163 -30.23549 -28.99125 -27.44286 -25.60663 -23.41295 -22.53459 -22.24344 -20.67198 -19.99892 -18.56535 -17.89085 -16.50148 -16.15318 -15.86961 -15.81502 -15.50356 -15.04522 -14.46450 -14.42825 -14.08555 -13.96666 -13.37474 -13.21548 -12.91527 -12.63163 -12.45375 -11.94281 -11.84829 -11.72327 -11.62586 -10.98484 -10.55718 -10.50970 -10.42280 -10.09713 -10.06427 -9.82696 -9.61852 -9.51698 -9.24365 -8.98925 -8.29819 -7.66678 -5.94594 -3.97067 0.88435 1.07211 1.76698 2.58386 3.34787 3.40787 3.44022 3.53483 3.59188 4.35206 4.41446 4.49688 4.64388 4.69684 4.71260 5.09494 5.13567 5.22095 5.26839 5.31918 5.35487 5.40832 5.64042 5.73589 5.78910 5.95226 6.11611 6.18721 6.27591 6.51564 6.57013 6.82534 6.98223 7.02508 7.20012 7.36862 7.74659 7.78620 7.90268 8.06680 8.25536 8.48418 9.10628 9.66577 11.16731 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049693 B = 0.002286 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.329764 B =12245.813205 C =12772.772613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.198 4.198 3 C -0.030 4.030 4 C -0.233 4.233 5 C 0.148 3.852 6 N -0.547 5.547 7 C 0.405 3.595 8 N -0.520 5.520 9 N -0.523 5.523 10 C 0.510 3.490 11 O -0.540 6.540 12 C -0.127 4.127 13 C -0.102 4.102 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.157 0.843 30 H 0.440 0.560 31 H 0.431 0.569 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 29.462 -0.076 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.206 4.206 3 C -0.056 4.056 4 C -0.256 4.256 5 C -0.009 4.009 6 N -0.265 5.265 7 C 0.169 3.831 8 N -0.249 5.249 9 N -0.271 5.271 10 C 0.298 3.702 11 O -0.415 6.415 12 C -0.168 4.168 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.174 0.826 30 H 0.286 0.714 31 H 0.272 0.728 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.396 28.328 -0.078 29.041 hybrid contribution 0.190 -0.049 0.007 0.197 sum 6.587 28.279 -0.071 29.036 Atomic orbital electron populations 1.20631 0.90237 1.02993 1.02612 1.19989 0.97171 0.91770 1.11665 1.21206 0.93990 0.97093 0.93339 1.21816 0.95067 0.99373 1.09359 1.22379 0.99655 0.86756 0.92132 1.67042 1.05623 1.32525 1.21322 1.18039 0.88816 0.84059 0.92211 1.43370 1.06677 0.94028 1.80862 1.45148 1.08855 0.96184 1.76942 1.21486 0.88895 0.84065 0.75761 1.90718 1.13988 1.87091 1.49724 1.21753 1.00122 0.90261 1.04652 1.21477 0.96985 0.92444 1.03160 1.21654 0.99094 0.93818 1.00242 1.19099 0.94083 0.91237 0.97339 1.21280 0.93000 0.91172 1.50366 0.92722 1.25045 0.94853 0.99253 0.95481 1.69972 1.06137 1.26421 1.50953 0.86604 0.79841 0.83550 0.78045 1.20713 1.21277 1.19915 0.90945 0.90837 0.91862 0.84747 0.84993 0.82572 0.71394 0.72753 0.88554 0.88548 0.91630 0.91632 0.93332 0.93333 0.96574 0.96562 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.59 36.01 0.35 -0.36 16 2 C -0.20 -1.69 5.92 -104.27 -0.62 -2.30 16 3 C -0.03 -0.21 9.85 -39.32 -0.39 -0.60 16 4 C -0.23 -1.55 10.10 -39.42 -0.40 -1.95 16 5 C 0.15 1.18 11.17 -17.57 -0.20 0.98 16 6 N -0.55 -5.72 9.37 -12.44 -0.12 -5.84 16 7 C 0.41 4.30 7.58 -155.02 -1.17 3.13 16 8 N -0.52 -5.96 6.33 31.12 0.20 -5.76 16 9 N -0.52 -6.17 6.29 31.22 0.20 -5.97 16 10 C 0.51 7.17 7.95 -10.98 -0.09 7.08 16 11 O -0.54 -9.57 15.82 5.55 0.09 -9.48 16 12 C -0.13 -1.64 5.70 -27.89 -0.16 -1.80 16 13 C -0.10 -1.80 4.50 -26.74 -0.12 -1.92 16 14 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 27 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 28 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 29 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.44 4.95 5.98 -182.59 -1.09 3.85 16 31 H 0.43 4.35 7.95 -182.59 -1.45 2.90 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -34.58 341.01 -10.18 -44.76 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.92 Total: 0.60 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.48 Total: -13.55 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 1.01 Total: -44.40 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.58 -10.18 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807388742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.391 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds