Wall clock time and date at job start Mon Mar 30 2020 01:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38338 * 120.44647 * 2 1 4 4 C 1.38838 * 118.50423 * 180.02562 * 3 2 1 5 5 C 1.38067 * 119.33083 * 0.02562 * 4 3 2 6 6 N 1.31943 * 120.84908 * 359.73157 * 5 4 3 7 7 C 1.32419 * 121.62608 * 0.53702 * 6 5 4 8 8 N 1.39004 * 119.71154 * 179.74909 * 7 6 5 9 9 N 1.40105 * 119.99358 * 359.72074 * 8 7 6 10 10 C 1.34777 * 119.99775 * 179.72245 * 9 8 7 11 11 O 1.21283 * 120.00222 * 0.28016 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27576 * 10 9 8 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47353 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47600 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47646 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99463 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00445 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00395 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99434 * 20 18 16 22 22 H 1.48501 * 109.47293 * 209.99885 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99683 * 20 18 16 24 24 H 1.08999 * 109.46870 * 269.97318 * 1 2 3 25 25 H 1.08999 * 109.47183 * 29.97746 * 1 2 3 26 26 H 1.09001 * 109.46570 * 149.97315 * 1 2 3 27 27 H 1.08005 * 120.75157 * 0.04789 * 3 2 1 28 28 H 1.08004 * 120.33465 * 179.97438 * 4 3 2 29 29 H 1.08002 * 119.57407 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00798 * 179.71936 * 8 7 6 31 31 H 0.97001 * 120.00437 * 0.02562 * 9 8 7 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 35 35 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 36 36 H 1.08999 * 109.47616 * 300.00389 * 14 13 12 37 37 H 1.09003 * 109.47280 * 60.00024 * 14 13 12 38 38 H 1.08998 * 109.47382 * 300.00476 * 15 14 13 39 39 H 1.09005 * 109.46800 * 60.00677 * 15 14 13 40 40 H 0.96996 * 120.00393 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1926 0.0000 4 6 3.5956 1.1456 -0.0005 5 6 4.2308 -0.0803 -0.0016 6 7 3.5362 -1.2022 0.0032 7 6 2.2120 -1.1991 -0.0014 8 7 1.5203 -2.4047 -0.0013 9 7 2.2242 -3.6161 -0.0023 10 6 1.5535 -4.7852 0.0034 11 8 0.3407 -4.7886 0.0043 12 6 2.3106 -6.0882 0.0086 13 6 1.3196 -7.2538 0.0139 14 6 2.0882 -8.5767 0.0185 15 6 1.0973 -9.7424 0.0232 16 6 1.8543 -11.0454 0.0284 17 1 2.9343 -11.0424 0.0279 18 6 1.1683 -12.2413 0.0326 19 7 -0.1468 -12.2450 0.0327 20 14 2.1067 -13.8565 0.0398 21 1 2.3545 -14.2789 1.4417 22 1 1.3075 -14.8964 -0.6567 23 1 3.4043 -13.6781 -0.6601 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3632 -0.8898 -0.5143 27 1 1.6877 2.1391 0.0008 28 1 4.1724 2.0587 -0.0010 29 1 5.3100 -0.1215 -0.0025 30 1 0.5503 -2.4075 -0.0005 31 1 3.1942 -3.6135 -0.0027 32 1 2.9367 -6.1481 -0.8816 33 1 2.9381 -6.1403 0.8983 34 1 0.6931 -7.1941 0.9038 35 1 0.6924 -7.2016 -0.8762 36 1 2.7144 -8.6363 -0.8716 37 1 2.7157 -8.6292 0.9083 38 1 0.4707 -9.6831 0.9131 39 1 0.4702 -9.6897 -0.8669 40 1 -0.6295 -13.0863 0.0360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807388742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:14 Heat of formation + Delta-G solvation = -11.196829 kcal Electronic energy + Delta-G solvation = -19963.080403 eV Core-core repulsion = 16777.269282 eV Total energy + Delta-G solvation = -3185.811121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52263 -40.63773 -37.26794 -36.52308 -34.72833 -34.59648 -33.39329 -31.61843 -30.09027 -28.06158 -27.31663 -24.60482 -23.50256 -23.16717 -21.92426 -21.50389 -19.37738 -18.80959 -18.38095 -17.35443 -17.02287 -16.58976 -16.43066 -16.13158 -15.92945 -15.37700 -15.18164 -15.00516 -14.53094 -13.96435 -13.87477 -13.70789 -13.61609 -13.40854 -13.30323 -12.88964 -12.75924 -12.45222 -12.34606 -12.16655 -12.14363 -11.39886 -11.36543 -11.22721 -10.97603 -10.69848 -10.54132 -10.47117 -10.27198 -8.44722 -8.18038 -6.29913 0.29408 0.46309 0.90627 1.40834 1.43031 1.51563 1.54093 2.42364 2.80581 2.92231 3.14698 3.57057 3.83958 3.88098 4.01848 4.14242 4.15061 4.22314 4.41127 4.63100 4.67749 4.67841 4.73047 4.82212 4.85111 4.87932 5.14179 5.18993 5.20281 5.33042 5.37644 5.40374 5.51187 5.58330 5.79612 5.86469 5.89423 6.15144 6.26427 6.49985 6.88703 7.04494 7.31777 7.39568 8.94164 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049693 B = 0.002286 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.329764 B =12245.813205 C =12772.772613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.205 4.205 3 C -0.034 4.034 4 C -0.223 4.223 5 C 0.130 3.870 6 N -0.568 5.568 7 C 0.377 3.623 8 N -0.532 5.532 9 N -0.509 5.509 10 C 0.510 3.490 11 O -0.586 6.586 12 C -0.116 4.116 13 C -0.094 4.094 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.164 0.836 28 H 0.162 0.838 29 H 0.181 0.819 30 H 0.437 0.563 31 H 0.439 0.561 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.062 0.938 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 31.067 -0.080 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.213 4.213 3 C -0.060 4.060 4 C -0.245 4.245 5 C -0.026 4.026 6 N -0.286 5.286 7 C 0.143 3.857 8 N -0.263 5.263 9 N -0.256 5.256 10 C 0.298 3.702 11 O -0.465 6.465 12 C -0.156 4.156 13 C -0.133 4.133 14 C -0.134 4.134 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.183 1.183 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.181 0.819 28 H 0.180 0.820 29 H 0.198 0.802 30 H 0.283 0.717 31 H 0.283 0.717 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.069 29.990 -0.081 31.331 hybrid contribution -0.598 -0.383 0.009 0.710 sum 8.471 29.607 -0.072 30.795 Atomic orbital electron populations 1.20663 0.89311 1.03443 1.02976 1.20281 0.98093 0.91696 1.11242 1.21632 0.94406 0.97618 0.92316 1.22213 0.95266 1.00055 1.07004 1.22912 1.00866 0.86728 0.92108 1.67007 1.05745 1.34041 1.21824 1.18318 0.89323 0.84196 0.93900 1.43470 1.06651 0.93978 1.82219 1.44921 1.09183 0.96215 1.75300 1.21551 0.88272 0.84931 0.75426 1.90703 1.15867 1.87696 1.52236 1.21615 0.98950 0.87693 1.07379 1.21251 0.97394 0.93252 1.01389 1.21448 0.97841 0.92547 1.01525 1.19065 0.94726 0.93755 0.94388 1.21759 0.93770 0.92216 1.50089 0.91548 1.26096 0.95821 1.03731 0.94877 1.70129 1.08131 1.27620 1.51957 0.85383 0.78676 0.78085 0.78500 1.19737 1.20998 1.18325 0.90600 0.88958 0.92810 0.81884 0.82039 0.80229 0.71721 0.71734 0.85762 0.85750 0.93534 0.93542 0.91916 0.91894 0.99644 0.99631 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.59 71.24 0.68 -0.64 16 2 C -0.21 -3.26 5.92 -19.63 -0.12 -3.38 16 3 C -0.03 -0.38 9.85 22.44 0.22 -0.16 16 4 C -0.22 -2.31 10.10 22.37 0.23 -2.09 16 5 C 0.13 1.80 11.17 84.64 0.95 2.75 16 6 N -0.57 -11.26 9.37 -193.26 -1.81 -13.07 16 7 C 0.38 7.83 7.58 133.05 1.01 8.83 16 8 N -0.53 -12.32 6.33 -55.45 -0.35 -12.67 16 9 N -0.51 -11.81 6.29 -173.53 -1.09 -12.91 16 10 C 0.51 14.30 7.95 87.66 0.70 14.99 16 11 O -0.59 -21.54 15.82 -3.04 -0.05 -21.59 16 12 C -0.12 -2.84 5.70 29.85 0.17 -2.67 16 13 C -0.09 -3.36 4.50 30.59 0.14 -3.23 16 14 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 15 C 0.02 0.98 4.97 29.85 0.15 1.12 16 16 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 19 N -0.94 -59.23 13.29 21.44 0.28 -58.94 16 20 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 0.76 8.09 -2.39 -0.02 0.74 16 26 H 0.05 0.77 6.57 -2.39 -0.02 0.75 16 27 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 28 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 29 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 30 H 0.44 10.29 5.98 -213.32 -1.28 9.01 16 31 H 0.44 8.41 7.95 -213.32 -1.70 6.71 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.05 1.80 8.10 -2.38 -0.02 1.78 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -77.45 341.01 2.06 -75.39 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -1.92 Total: 16.13 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.97 Total: -19.37 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -2.97 Total: -97.60 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.45 2.06 -75.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807388742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.192 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds