Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30869 * 125.41145 * 2 1 4 4 C 1.33308 * 109.70090 * 179.86257 * 3 2 1 5 5 C 1.50694 * 126.10903 * 180.16196 * 4 3 2 6 6 C 1.36781 * 107.77467 * 0.40383 * 4 3 2 7 7 C 1.46640 * 126.84718 * 179.75761 * 6 4 3 8 8 O 1.21728 * 119.99892 * 90.24258 * 7 6 4 9 9 N 1.34779 * 120.00240 * 270.24203 * 7 6 4 10 10 C 1.36880 * 119.99784 * 186.51820 * 9 7 6 11 11 H 1.08006 * 119.99514 * 227.33325 * 10 9 7 12 12 C 1.39008 * 120.00171 * 47.33058 * 10 9 7 13 13 N 1.31395 * 120.00356 * 25.49359 * 12 10 9 14 14 Si 1.86804 * 119.99716 * 205.49147 * 12 10 9 15 15 H 1.48496 * 109.47000 * 64.99905 * 14 12 10 16 16 H 1.48506 * 109.47068 * 184.99495 * 14 12 10 17 17 H 1.48492 * 109.47426 * 304.99111 * 14 12 10 18 18 C 1.46499 * 119.99871 * 6.51386 * 9 7 6 19 19 C 1.54265 * 110.03190 * 234.24258 * 18 9 7 20 20 C 1.54966 * 104.15957 * 217.13658 * 19 18 9 21 21 C 1.54896 * 102.77654 * 37.88957 * 20 19 18 22 22 C 1.53875 * 110.03003 * 117.02567 * 18 9 7 23 23 N 1.34544 * 125.41703 * 180.31816 * 2 1 3 24 24 H 0.97003 * 126.46807 * 0.02562 * 23 2 1 25 25 H 1.08994 * 109.47055 * 264.67832 * 1 2 3 26 26 H 1.09000 * 109.47214 * 144.67497 * 1 2 3 27 27 H 1.09001 * 109.47221 * 24.67979 * 1 2 3 28 28 H 1.09000 * 109.47044 * 270.28313 * 5 4 3 29 29 H 1.08994 * 109.47396 * 30.28271 * 5 4 3 30 30 H 1.09001 * 109.47428 * 150.28676 * 5 4 3 31 31 H 0.96995 * 119.99918 * 184.93096 * 13 12 10 32 32 H 1.09003 * 110.01668 * 355.63469 * 18 9 7 33 33 H 1.08996 * 110.48808 * 335.78485 * 19 18 9 34 34 H 1.08998 * 110.48480 * 98.43278 * 19 18 9 35 35 H 1.08997 * 110.72009 * 279.57436 * 20 19 18 36 36 H 1.08997 * 110.92293 * 156.29338 * 20 19 18 37 37 H 1.08999 * 110.48279 * 203.40636 * 21 20 19 38 38 H 1.08994 * 110.59899 * 80.81589 * 21 20 19 39 39 H 1.09003 * 110.03123 * 238.56760 * 22 18 9 40 40 H 1.09001 * 110.03719 * 359.94823 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5485 0.7056 0.0030 5 6 4.7331 1.6371 0.0075 6 6 3.5978 -0.6613 -0.0042 7 6 4.8022 -1.4978 -0.0090 8 8 5.2999 -1.8541 1.0432 9 7 5.3581 -1.8721 -1.1784 10 6 6.4002 -2.7596 -1.1877 11 1 7.2798 -2.5533 -1.7795 12 6 6.3263 -3.9262 -0.4355 13 7 5.1553 -4.4391 -0.1318 14 14 7.8918 -4.7649 0.1435 15 1 8.6040 -3.8785 1.0986 16 1 7.5486 -6.0435 0.8165 17 1 8.7672 -5.0396 -1.0241 18 6 4.8471 -1.3290 -2.4394 19 6 4.4753 -2.4792 -3.3979 20 6 4.8864 -1.9546 -4.7969 21 6 6.1986 -1.1860 -4.5025 22 6 5.9420 -0.5069 -3.1414 23 7 2.2867 -1.0965 -0.0061 24 1 1.9851 -2.0184 -0.0116 25 1 -0.3633 -0.0953 1.0232 26 1 -0.3633 -0.8384 -0.5942 27 1 -0.3634 0.9338 -0.4291 28 1 5.0183 1.8671 -1.0191 29 1 4.4688 2.5586 0.5262 30 1 5.5691 1.1595 0.5185 31 1 5.1009 -5.2117 0.4521 32 1 3.9744 -0.7040 -2.2500 33 1 5.0360 -3.3800 -3.1485 34 1 3.4034 -2.6738 -3.3625 35 1 4.1263 -1.2827 -5.1955 36 1 5.0685 -2.7807 -5.4843 37 1 6.3836 -0.4379 -5.2733 38 1 7.0395 -1.8759 -4.4321 39 1 5.6004 0.5170 -3.2935 40 1 6.8534 -0.5111 -2.5435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = 10.974312 kcal Electronic energy + Delta-G solvation = -22849.413775 eV Core-core repulsion = 19664.564066 eV Total energy + Delta-G solvation = -3184.849709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63400 -38.67331 -36.66486 -33.47732 -32.90859 -31.94674 -31.23142 -28.81237 -28.05310 -26.93442 -26.40713 -24.22467 -21.25352 -20.46501 -20.09468 -19.59716 -19.05104 -17.50900 -16.12820 -15.69977 -15.20687 -14.83859 -14.74807 -14.11476 -13.85033 -13.60250 -12.97417 -12.83147 -12.79416 -12.61153 -12.40599 -12.18311 -12.05382 -11.65856 -11.55123 -11.11145 -11.00062 -10.84588 -10.63160 -10.55770 -10.47559 -10.30927 -10.06434 -9.86034 -9.71198 -9.43052 -8.72059 -8.46576 -7.60256 -7.29581 -6.30969 -4.00682 2.37017 3.17383 3.34217 3.35312 3.41298 3.42852 4.17440 4.27914 4.67152 4.88980 5.08363 5.24551 5.26693 5.31323 5.45818 5.54086 5.58486 5.71695 5.86348 5.92805 5.94560 6.10636 6.13605 6.15952 6.21837 6.29975 6.37744 6.41079 6.44805 6.47758 6.60637 6.63766 6.81465 6.94600 7.16344 7.21228 7.54640 7.80276 8.18151 8.47308 8.90840 9.01539 9.47849 10.09908 10.76606 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.007990 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.096448 B = 3503.577387 C = 4321.350727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.192 3.808 3 N -0.490 5.490 4 C 0.021 3.979 5 C -0.064 4.064 6 C -0.019 4.019 7 C 0.549 3.451 8 O -0.541 6.541 9 N -0.426 5.426 10 C -0.339 4.339 11 H 0.081 0.919 12 C 0.081 3.919 13 N -0.841 5.841 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.129 3.871 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.129 4.129 23 N -0.541 5.541 24 H 0.422 0.578 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.266 0.734 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 5.734 -5.987 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 N -0.212 5.212 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.139 4.139 7 C 0.334 3.666 8 O -0.419 6.419 9 N -0.147 5.147 10 C -0.465 4.465 11 H 0.099 0.901 12 C -0.129 4.129 13 N -0.474 5.474 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.024 3.976 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.168 4.168 23 N -0.145 5.145 24 H 0.260 0.740 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.825 6.173 -5.407 10.063 hybrid contribution 0.609 -1.828 0.378 1.963 sum -5.216 4.345 -5.028 8.448 Atomic orbital electron populations 1.20117 0.85202 1.03874 1.02976 1.23054 0.95307 0.81891 1.06856 1.69806 1.01826 1.28473 1.21057 1.20731 0.92807 0.90402 1.07111 1.20002 0.93107 0.97087 1.01993 1.21587 0.85243 0.95471 1.11558 1.16850 0.83311 0.81098 0.85308 1.90674 1.63686 1.56263 1.31284 1.43242 1.31192 1.38657 1.01609 1.18747 0.95693 0.98400 1.33686 0.90111 1.25234 0.96815 0.94712 0.96172 1.69904 1.24917 1.21233 1.31370 0.86391 0.83074 0.78087 0.79302 1.19720 1.21346 1.20062 1.21732 0.94981 0.94153 0.86688 1.22612 0.99979 1.00468 0.92943 1.22449 0.97095 0.99028 0.97482 1.22255 0.97929 0.98789 0.96446 1.22447 1.00254 0.97839 0.96243 1.43169 1.05940 1.10009 1.55423 0.74004 0.90608 0.91019 0.89353 0.91581 0.91493 0.91064 0.92365 0.91636 0.88715 0.93411 0.92604 0.92282 0.92819 0.91550 0.92745 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 36.00 0.38 -0.33 16 2 C 0.19 3.21 8.12 -155.56 -1.26 1.95 16 3 N -0.49 -9.36 11.20 -6.81 -0.08 -9.43 16 4 C 0.02 0.42 6.94 -82.48 -0.57 -0.15 16 5 C -0.06 -1.12 10.24 36.00 0.37 -0.75 16 6 C -0.02 -0.42 4.91 -82.15 -0.40 -0.82 16 7 C 0.55 13.96 6.41 -12.87 -0.08 13.87 16 8 O -0.54 -16.02 15.79 5.16 0.08 -15.94 16 9 N -0.43 -10.26 2.39 -108.02 -0.26 -10.52 16 10 C -0.34 -8.81 7.07 -15.01 -0.11 -8.92 16 11 H 0.08 2.04 7.46 -52.48 -0.39 1.65 16 12 C 0.08 2.18 4.20 -17.45 -0.07 2.11 16 13 N -0.84 -23.39 12.78 55.50 0.71 -22.68 16 14 Si 0.91 21.39 29.63 -169.99 -5.04 16.35 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 C 0.13 2.59 3.20 -66.81 -0.21 2.37 16 19 C -0.12 -2.30 6.41 -25.03 -0.16 -2.46 16 20 C -0.12 -1.87 6.91 -24.69 -0.17 -2.04 16 21 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 22 C -0.13 -2.26 6.26 -25.61 -0.16 -2.42 16 23 N -0.54 -10.05 6.19 -7.01 -0.04 -10.10 16 24 H 0.42 7.19 8.96 -40.82 -0.37 6.83 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 33 H 0.09 2.09 6.89 -51.93 -0.36 1.73 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.42 7.19 -51.93 -0.37 1.05 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -32.11 329.74 -8.29 -40.40 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.00 Total: 6.50 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.63 Total: 0.45 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.33 Total: -52.73 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.08 Total: -15.94 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.11 -8.29 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.377 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds