Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30869 * 125.41145 * 2 1 4 4 C 1.33308 * 109.70090 * 179.86257 * 3 2 1 5 5 C 1.50694 * 126.10903 * 180.16196 * 4 3 2 6 6 C 1.36781 * 107.77467 * 0.40383 * 4 3 2 7 7 C 1.46640 * 126.84718 * 179.75761 * 6 4 3 8 8 O 1.21728 * 119.99892 * 90.24258 * 7 6 4 9 9 N 1.34779 * 120.00240 * 270.24203 * 7 6 4 10 10 C 1.36880 * 119.99784 * 186.51820 * 9 7 6 11 11 H 1.08006 * 119.99514 * 227.33325 * 10 9 7 12 12 C 1.39008 * 120.00171 * 47.33058 * 10 9 7 13 13 N 1.31395 * 120.00356 * 25.49359 * 12 10 9 14 14 Si 1.86804 * 119.99716 * 205.49147 * 12 10 9 15 15 H 1.48496 * 109.47000 * 64.99905 * 14 12 10 16 16 H 1.48506 * 109.47068 * 184.99495 * 14 12 10 17 17 H 1.48492 * 109.47426 * 304.99111 * 14 12 10 18 18 C 1.46499 * 119.99871 * 6.51386 * 9 7 6 19 19 C 1.54265 * 110.03190 * 234.24258 * 18 9 7 20 20 C 1.54966 * 104.15957 * 217.13658 * 19 18 9 21 21 C 1.54896 * 102.77654 * 37.88957 * 20 19 18 22 22 C 1.53875 * 110.03003 * 117.02567 * 18 9 7 23 23 N 1.34544 * 125.41703 * 180.31816 * 2 1 3 24 24 H 0.97003 * 126.46807 * 0.02562 * 23 2 1 25 25 H 1.08994 * 109.47055 * 264.67832 * 1 2 3 26 26 H 1.09000 * 109.47214 * 144.67497 * 1 2 3 27 27 H 1.09001 * 109.47221 * 24.67979 * 1 2 3 28 28 H 1.09000 * 109.47044 * 270.28313 * 5 4 3 29 29 H 1.08994 * 109.47396 * 30.28271 * 5 4 3 30 30 H 1.09001 * 109.47428 * 150.28676 * 5 4 3 31 31 H 0.96995 * 119.99918 * 184.93096 * 13 12 10 32 32 H 1.09003 * 110.01668 * 355.63469 * 18 9 7 33 33 H 1.08996 * 110.48808 * 335.78485 * 19 18 9 34 34 H 1.08998 * 110.48480 * 98.43278 * 19 18 9 35 35 H 1.08997 * 110.72009 * 279.57436 * 20 19 18 36 36 H 1.08997 * 110.92293 * 156.29338 * 20 19 18 37 37 H 1.08999 * 110.48279 * 203.40636 * 21 20 19 38 38 H 1.08994 * 110.59899 * 80.81589 * 21 20 19 39 39 H 1.09003 * 110.03123 * 238.56760 * 22 18 9 40 40 H 1.09001 * 110.03719 * 359.94823 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5485 0.7056 0.0030 5 6 4.7331 1.6371 0.0075 6 6 3.5978 -0.6613 -0.0042 7 6 4.8022 -1.4978 -0.0090 8 8 5.2999 -1.8541 1.0432 9 7 5.3581 -1.8721 -1.1784 10 6 6.4002 -2.7596 -1.1877 11 1 7.2798 -2.5533 -1.7795 12 6 6.3263 -3.9262 -0.4355 13 7 5.1553 -4.4391 -0.1318 14 14 7.8918 -4.7649 0.1435 15 1 8.6040 -3.8785 1.0986 16 1 7.5486 -6.0435 0.8165 17 1 8.7672 -5.0396 -1.0241 18 6 4.8471 -1.3290 -2.4394 19 6 4.4753 -2.4792 -3.3979 20 6 4.8864 -1.9546 -4.7969 21 6 6.1986 -1.1860 -4.5025 22 6 5.9420 -0.5069 -3.1414 23 7 2.2867 -1.0965 -0.0061 24 1 1.9851 -2.0184 -0.0116 25 1 -0.3633 -0.0953 1.0232 26 1 -0.3633 -0.8384 -0.5942 27 1 -0.3634 0.9338 -0.4291 28 1 5.0183 1.8671 -1.0191 29 1 4.4688 2.5586 0.5262 30 1 5.5691 1.1595 0.5185 31 1 5.1009 -5.2117 0.4521 32 1 3.9744 -0.7040 -2.2500 33 1 5.0360 -3.3800 -3.1485 34 1 3.4034 -2.6738 -3.3625 35 1 4.1263 -1.2827 -5.1955 36 1 5.0685 -2.7807 -5.4843 37 1 6.3836 -0.4379 -5.2733 38 1 7.0395 -1.8759 -4.4321 39 1 5.6004 0.5170 -3.2935 40 1 6.8534 -0.5111 -2.5435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -9.107579 kcal Electronic energy + Delta-G solvation = -22850.284591 eV Core-core repulsion = 19664.564066 eV Total energy + Delta-G solvation = -3185.720525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.11827 -40.41385 -38.36030 -35.36073 -34.34312 -33.72571 -32.73542 -30.04587 -29.46315 -28.55684 -28.03689 -25.96682 -22.89977 -21.92209 -21.41801 -21.19517 -20.70217 -19.16893 -17.89242 -17.26286 -17.00360 -16.47567 -16.20953 -15.78316 -15.49772 -15.10494 -14.48605 -14.40222 -14.10649 -14.01977 -13.86927 -13.49512 -13.30702 -13.20057 -12.96570 -12.93873 -12.79626 -12.58940 -12.33249 -12.14552 -11.87786 -11.82520 -11.43361 -11.37194 -11.28515 -10.89008 -10.70124 -10.42361 -9.25805 -9.12624 -8.34606 -6.06486 0.86455 1.31869 1.43260 1.47812 1.67034 1.97937 2.34074 2.45836 3.04046 3.19342 3.44765 3.83896 3.88999 3.97056 4.10389 4.21063 4.32532 4.54032 4.61695 4.65874 4.74031 4.76650 4.79058 4.83175 4.91896 4.92013 5.04491 5.07779 5.11860 5.13620 5.16123 5.26999 5.40393 5.49331 5.53227 5.64816 5.68863 6.17090 6.42478 6.92121 7.00983 7.05996 7.52541 8.15342 8.72105 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.007990 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.096448 B = 3503.577387 C = 4321.350727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.216 3.784 3 N -0.510 5.510 4 C 0.025 3.975 5 C -0.063 4.063 6 C -0.062 4.062 7 C 0.545 3.455 8 O -0.600 6.600 9 N -0.429 5.429 10 C -0.345 4.345 11 H 0.082 0.918 12 C 0.036 3.964 13 N -0.870 5.870 14 Si 0.955 3.045 15 H -0.288 1.288 16 H -0.286 1.286 17 H -0.252 1.252 18 C 0.126 3.874 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.126 4.126 23 N -0.543 5.543 24 H 0.425 0.575 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 7.035 -7.920 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 N -0.232 5.232 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.180 4.180 7 C 0.332 3.668 8 O -0.483 6.483 9 N -0.148 5.148 10 C -0.472 4.472 11 H 0.100 0.900 12 C -0.171 4.171 13 N -0.504 5.504 14 Si 0.780 3.220 15 H -0.214 1.214 16 H -0.212 1.212 17 H -0.176 1.176 18 C 0.022 3.978 19 C -0.158 4.158 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.165 4.165 23 N -0.148 5.148 24 H 0.264 0.736 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.050 7.473 -7.403 12.663 hybrid contribution 0.884 -2.146 0.967 2.514 sum -6.166 5.327 -6.435 10.383 Atomic orbital electron populations 1.20423 0.80901 1.05862 1.04903 1.24208 0.97338 0.80620 1.02609 1.69900 1.01299 1.29191 1.22818 1.21120 0.94064 0.90046 1.05388 1.20054 0.91687 0.97201 1.03112 1.21058 0.85375 0.95645 1.15947 1.17282 0.84152 0.80674 0.84713 1.90609 1.65658 1.58802 1.33214 1.43424 1.30653 1.37838 1.02916 1.18942 0.96480 0.98448 1.33378 0.89995 1.25952 0.99043 0.95608 0.96457 1.69974 1.26402 1.21771 1.32298 0.85600 0.80393 0.76814 0.79159 1.21397 1.21180 1.17601 1.21940 0.95865 0.94767 0.85211 1.22525 0.99414 0.98574 0.95329 1.22417 0.97471 0.99805 0.95144 1.22245 0.97569 0.99209 0.95854 1.22418 0.98270 0.98866 0.96904 1.43177 1.05105 1.10779 1.55708 0.73558 0.88665 0.88517 0.87740 0.89827 0.89492 0.93030 0.92885 0.91707 0.92390 0.93417 0.90263 0.90827 0.89508 0.92630 0.90510 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 10.51 71.23 0.75 -0.42 16 2 C 0.22 6.79 8.12 138.18 1.12 7.91 16 3 N -0.51 -18.60 11.20 -175.46 -1.97 -20.56 16 4 C 0.03 1.01 6.94 41.99 0.29 1.31 16 5 C -0.06 -2.17 10.24 71.23 0.73 -1.44 16 6 C -0.06 -2.74 4.91 40.00 0.20 -2.54 16 7 C 0.54 28.75 6.41 86.44 0.55 29.30 16 8 O -0.60 -37.39 15.79 -4.44 -0.07 -37.46 16 9 N -0.43 -21.27 2.39 -613.87 -1.47 -22.74 16 10 C -0.35 -18.53 7.07 84.09 0.59 -17.94 16 11 H 0.08 4.26 7.46 -2.91 -0.02 4.24 16 12 C 0.04 2.01 4.20 84.94 0.36 2.37 16 13 N -0.87 -50.27 12.78 21.67 0.28 -49.99 16 14 Si 0.96 45.03 29.63 68.60 2.03 47.06 16 15 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 17 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 18 C 0.13 5.02 3.20 45.72 0.15 5.17 16 19 C -0.12 -4.49 6.41 31.70 0.20 -4.29 16 20 C -0.11 -3.07 6.91 31.91 0.22 -2.85 16 21 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 22 C -0.13 -4.24 6.26 31.32 0.20 -4.04 16 23 N -0.54 -19.97 6.19 -176.10 -1.09 -21.06 16 24 H 0.43 14.55 8.96 -92.71 -0.83 13.72 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.05 1.96 7.94 -2.39 -0.02 1.94 16 31 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.06 2.59 6.12 -2.39 -0.01 2.58 16 33 H 0.06 2.61 6.89 -2.39 -0.02 2.59 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 2.01 7.19 -2.39 -0.02 2.00 16 Total: -1.00 -72.95 329.74 3.51 -69.44 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.22 Total: 25.67 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.58 Total: 9.64 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -4.24 Total: -114.35 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.07 Total: -37.46 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.95 3.51 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.336 kcal (2) G-P(sol) polarization free energy of solvation -72.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds