Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39837 * 126.45593 * 2 1 4 4 C 1.35453 * 107.86771 * 180.10361 * 3 2 1 5 5 N 1.35534 * 108.86874 * 359.63773 * 4 3 2 6 6 H 0.97006 * 125.68040 * 180.25059 * 5 4 3 7 7 C 1.37653 * 108.64361 * 0.22801 * 5 4 3 8 8 C 1.46673 * 126.23017 * 180.02562 * 7 5 4 9 9 O 1.21697 * 120.00340 * 71.84517 * 8 7 5 10 10 N 1.34776 * 119.99927 * 251.84165 * 8 7 5 11 11 C 1.47078 * 120.88165 * 5.40579 * 10 8 7 12 12 C 1.53696 * 108.27901 * 128.75738 * 11 10 8 13 13 N 1.46898 * 109.26003 * 54.07828 * 12 11 10 14 14 C 1.46892 * 111.00230 * 172.61113 * 13 12 11 15 15 C 1.50701 * 109.47144 * 59.58719 * 14 13 12 16 16 H 1.07997 * 119.99944 * 355.10861 * 15 14 13 17 17 C 1.37877 * 120.00122 * 175.11385 * 15 14 13 18 18 N 1.31520 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46921 * 119.99340 * 19 17 15 22 22 H 1.48492 * 109.47444 * 239.99875 * 19 17 15 23 23 C 1.46900 * 111.26786 * 296.76154 * 13 12 11 24 24 C 1.47086 * 120.88085 * 185.68146 * 10 8 7 25 25 H 1.08997 * 109.46982 * 270.30384 * 1 2 3 26 26 H 1.09003 * 109.47290 * 30.30197 * 1 2 3 27 27 H 1.09002 * 109.46885 * 150.30001 * 1 2 3 28 28 H 1.08000 * 126.07122 * 359.96399 * 3 2 1 29 29 H 1.08000 * 125.57058 * 179.90305 * 4 3 2 30 30 H 1.08999 * 109.62857 * 248.52048 * 11 10 8 31 31 H 1.08994 * 109.62587 * 9.09898 * 11 10 8 32 32 H 1.09008 * 109.64317 * 294.07780 * 12 11 10 33 33 H 1.08999 * 109.42461 * 173.95084 * 12 11 10 34 34 H 1.09004 * 109.47551 * 179.58823 * 14 13 12 35 35 H 1.08998 * 109.47385 * 299.59185 * 14 13 12 36 36 H 0.96993 * 120.00357 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.49369 * 303.14287 * 23 13 12 38 38 H 1.08999 * 109.48916 * 183.06144 * 23 13 12 39 39 H 1.08993 * 109.62843 * 350.90013 * 24 10 8 40 40 H 1.09006 * 109.62532 * 111.48181 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6930 -0.0023 5 7 3.6284 -0.6624 0.0043 6 1 4.4191 -1.2243 0.0078 7 6 2.3263 -1.1088 0.0058 8 6 1.8900 -2.5091 0.0130 9 8 2.0218 -3.1825 1.0181 10 7 1.3430 -3.0502 -1.0936 11 6 1.2817 -2.2930 -2.3529 12 6 1.8686 -3.1689 -3.4712 13 7 1.1719 -4.4620 -3.4900 14 6 1.5794 -5.2627 -4.6521 15 6 3.0657 -5.5061 -4.5981 16 1 3.6614 -5.0409 -3.8267 17 6 3.6650 -6.3226 -5.5336 18 7 2.9395 -6.8896 -6.4728 19 14 5.5074 -6.6238 -5.4671 20 1 6.0902 -5.8759 -4.3242 21 1 5.7656 -8.0757 -5.2925 22 1 6.1310 -6.1586 -6.7320 23 6 1.3873 -5.2017 -2.2393 24 6 0.7861 -4.4114 -1.0722 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5092 28 1 2.0136 2.1549 -0.0005 29 1 4.4972 1.3253 -0.0044 30 1 0.2448 -2.0473 -2.5824 31 1 1.8655 -1.3774 -2.2584 32 1 2.9313 -3.3309 -3.2901 33 1 1.7348 -2.6696 -4.4308 34 1 1.0541 -6.2177 -4.6376 35 1 1.3323 -4.7260 -5.5680 36 1 3.3611 -7.4643 -7.1306 37 1 2.4566 -5.3354 -2.0754 38 1 0.9044 -6.1765 -2.3055 39 1 1.0421 -4.8970 -0.1306 40 1 -0.2976 -4.3653 -1.1809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827483611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 17.428987 kcal Electronic energy + Delta-G solvation = -22026.438983 eV Core-core repulsion = 18841.869171 eV Total energy + Delta-G solvation = -3184.569813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.39358 -39.39620 -37.40994 -34.48377 -32.74238 -32.32743 -30.93330 -29.67273 -28.17811 -26.85041 -25.32194 -23.33765 -22.77476 -21.56273 -20.73163 -19.71989 -18.74362 -17.77764 -16.53645 -16.32741 -15.40943 -15.08259 -14.84380 -14.44224 -14.25271 -13.88458 -13.75372 -13.58699 -13.35829 -13.05652 -12.77312 -12.70011 -12.27150 -12.17464 -11.90506 -11.58812 -11.19469 -11.09831 -11.03084 -10.72230 -10.65221 -10.29658 -10.01637 -9.84953 -9.67714 -8.83137 -8.51594 -8.48409 -8.11636 -7.30858 -6.11034 -4.20537 1.84265 2.42762 2.75443 3.13042 3.20204 3.28864 3.31384 3.53264 4.33390 4.64867 4.88169 4.96829 5.07884 5.19375 5.26357 5.35315 5.47232 5.58955 5.64911 5.69870 5.73576 5.84551 5.93603 5.96366 6.00080 6.08293 6.22984 6.37978 6.55446 6.66029 6.68626 6.79474 6.92692 7.15953 7.36714 7.43363 7.50646 7.80923 7.91781 8.13442 8.19565 8.20901 8.89337 9.46998 10.94145 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004748 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.785205 B = 5895.603555 C = 6319.505697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.119 4.119 3 C -0.202 4.202 4 C 0.006 3.994 5 N -0.529 5.529 6 H 0.419 0.581 7 C -0.031 4.031 8 C 0.586 3.414 9 O -0.544 6.544 10 N -0.591 5.591 11 C 0.112 3.888 12 C 0.051 3.949 13 N -0.540 5.540 14 C 0.187 3.813 15 C -0.551 4.551 16 H 0.055 0.945 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.051 3.949 24 C 0.114 3.886 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.168 0.832 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 14.160 10.341 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C -0.227 4.227 4 C -0.129 4.129 5 N -0.123 5.123 6 H 0.256 0.744 7 C -0.146 4.146 8 C 0.372 3.628 9 O -0.421 6.421 10 N -0.323 5.323 11 C -0.011 4.011 12 C -0.079 4.079 13 N -0.264 5.264 14 C 0.062 3.938 15 C -0.591 4.591 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.078 4.078 24 C -0.008 4.008 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.185 0.815 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.685 13.637 10.655 17.513 hybrid contribution 2.495 -0.598 -0.139 2.569 sum -0.190 13.039 10.516 16.752 Atomic orbital electron populations 1.20228 0.89825 1.02437 1.01824 1.19776 0.95369 0.90948 1.06547 1.20671 0.91757 0.98472 1.11754 1.21893 0.99496 0.82746 1.08746 1.41806 1.06875 1.07167 1.56501 0.74369 1.19979 0.84551 0.93544 1.16480 1.17196 0.77946 0.84511 0.83124 1.90811 1.56428 1.61984 1.32900 1.48125 1.58082 1.16147 1.09956 1.22114 1.01936 0.94456 0.82623 1.22323 0.96766 0.91572 0.97233 1.62491 1.56225 1.04019 1.03656 1.19775 0.94014 0.92869 0.87178 1.21756 0.94395 1.29487 1.13412 0.92656 1.24949 0.97996 0.95440 0.95253 1.69942 1.35473 1.31414 1.15885 0.86604 0.85791 0.78105 0.77891 1.20033 1.20844 1.20863 1.22234 0.99600 0.96664 0.89330 1.21921 0.97999 0.80938 0.99953 0.91815 0.91392 0.91908 0.84251 0.81459 0.90836 0.89996 0.94057 0.90263 0.94570 0.95159 0.92768 0.93998 0.90167 0.89365 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.20 36.00 0.37 -0.56 16 2 C -0.12 -1.49 5.81 -104.16 -0.60 -2.09 16 3 C -0.20 -2.16 10.76 -39.98 -0.43 -2.59 16 4 C 0.01 0.05 11.89 -16.91 -0.20 -0.15 16 5 N -0.53 -6.20 6.10 -9.39 -0.06 -6.26 16 6 H 0.42 4.25 8.96 -40.82 -0.37 3.88 16 7 C -0.03 -0.43 5.08 -81.98 -0.42 -0.85 16 8 C 0.59 9.73 7.19 -12.86 -0.09 9.63 16 9 O -0.54 -10.69 16.56 5.19 0.09 -10.61 16 10 N -0.59 -9.39 3.00 -173.72 -0.52 -9.91 16 11 C 0.11 1.65 6.17 -3.37 -0.02 1.63 16 12 C 0.05 0.92 5.17 -3.46 -0.02 0.90 16 13 N -0.54 -10.93 4.83 -235.47 -1.14 -12.07 16 14 C 0.19 4.61 5.11 -4.98 -0.03 4.59 16 15 C -0.55 -14.71 7.76 -34.44 -0.27 -14.98 16 16 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.05 0.97 5.24 -3.70 -0.02 0.95 16 24 C 0.11 1.84 6.61 -3.60 -0.02 1.82 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.72 7.69 -51.93 -0.40 0.32 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.13 6.22 -51.93 -0.32 0.81 16 32 H 0.04 0.84 6.62 -51.92 -0.34 0.50 16 33 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 34 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.04 0.89 7.10 -51.93 -0.37 0.52 16 38 H 0.08 1.49 8.06 -51.93 -0.42 1.08 16 39 H 0.09 1.44 7.04 -51.93 -0.37 1.08 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -31.46 326.00 -8.68 -40.14 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.83 Total: 2.47 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.85 Total: 0.03 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.98 Total: -53.05 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.46 -8.68 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.571 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds