Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39837 * 126.45593 * 2 1 4 4 C 1.35453 * 107.86771 * 180.10361 * 3 2 1 5 5 N 1.35534 * 108.86874 * 359.63773 * 4 3 2 6 6 H 0.97006 * 125.68040 * 180.25059 * 5 4 3 7 7 C 1.37653 * 108.64361 * 0.22801 * 5 4 3 8 8 C 1.46673 * 126.23017 * 180.02562 * 7 5 4 9 9 O 1.21697 * 120.00340 * 71.84517 * 8 7 5 10 10 N 1.34776 * 119.99927 * 251.84165 * 8 7 5 11 11 C 1.47078 * 120.88165 * 5.40579 * 10 8 7 12 12 C 1.53696 * 108.27901 * 128.75738 * 11 10 8 13 13 N 1.46898 * 109.26003 * 54.07828 * 12 11 10 14 14 C 1.46892 * 111.00230 * 172.61113 * 13 12 11 15 15 C 1.50701 * 109.47144 * 59.58719 * 14 13 12 16 16 H 1.07997 * 119.99944 * 355.10861 * 15 14 13 17 17 C 1.37877 * 120.00122 * 175.11385 * 15 14 13 18 18 N 1.31520 * 120.00244 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46921 * 119.99340 * 19 17 15 22 22 H 1.48492 * 109.47444 * 239.99875 * 19 17 15 23 23 C 1.46900 * 111.26786 * 296.76154 * 13 12 11 24 24 C 1.47086 * 120.88085 * 185.68146 * 10 8 7 25 25 H 1.08997 * 109.46982 * 270.30384 * 1 2 3 26 26 H 1.09003 * 109.47290 * 30.30197 * 1 2 3 27 27 H 1.09002 * 109.46885 * 150.30001 * 1 2 3 28 28 H 1.08000 * 126.07122 * 359.96399 * 3 2 1 29 29 H 1.08000 * 125.57058 * 179.90305 * 4 3 2 30 30 H 1.08999 * 109.62857 * 248.52048 * 11 10 8 31 31 H 1.08994 * 109.62587 * 9.09898 * 11 10 8 32 32 H 1.09008 * 109.64317 * 294.07780 * 12 11 10 33 33 H 1.08999 * 109.42461 * 173.95084 * 12 11 10 34 34 H 1.09004 * 109.47551 * 179.58823 * 14 13 12 35 35 H 1.08998 * 109.47385 * 299.59185 * 14 13 12 36 36 H 0.96993 * 120.00357 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.49369 * 303.14287 * 23 13 12 38 38 H 1.08999 * 109.48916 * 183.06144 * 23 13 12 39 39 H 1.08993 * 109.62843 * 350.90013 * 24 10 8 40 40 H 1.09006 * 109.62532 * 111.48181 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6930 -0.0023 5 7 3.6284 -0.6624 0.0043 6 1 4.4191 -1.2243 0.0078 7 6 2.3263 -1.1088 0.0058 8 6 1.8900 -2.5091 0.0130 9 8 2.0218 -3.1825 1.0181 10 7 1.3430 -3.0502 -1.0936 11 6 1.2817 -2.2930 -2.3529 12 6 1.8686 -3.1689 -3.4712 13 7 1.1719 -4.4620 -3.4900 14 6 1.5794 -5.2627 -4.6521 15 6 3.0657 -5.5061 -4.5981 16 1 3.6614 -5.0409 -3.8267 17 6 3.6650 -6.3226 -5.5336 18 7 2.9395 -6.8896 -6.4728 19 14 5.5074 -6.6238 -5.4671 20 1 6.0902 -5.8759 -4.3242 21 1 5.7656 -8.0757 -5.2925 22 1 6.1310 -6.1586 -6.7320 23 6 1.3873 -5.2017 -2.2393 24 6 0.7861 -4.4114 -1.0722 25 1 -0.3633 0.0054 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5092 28 1 2.0136 2.1549 -0.0005 29 1 4.4972 1.3253 -0.0044 30 1 0.2448 -2.0473 -2.5824 31 1 1.8655 -1.3774 -2.2584 32 1 2.9313 -3.3309 -3.2901 33 1 1.7348 -2.6696 -4.4308 34 1 1.0541 -6.2177 -4.6376 35 1 1.3323 -4.7260 -5.5680 36 1 3.3611 -7.4643 -7.1306 37 1 2.4566 -5.3354 -2.0754 38 1 0.9044 -6.1765 -2.3055 39 1 1.0421 -4.8970 -0.1306 40 1 -0.2976 -4.3653 -1.1809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827483611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -4.267276 kcal Electronic energy + Delta-G solvation = -22027.379804 eV Core-core repulsion = 18841.869171 eV Total energy + Delta-G solvation = -3185.510634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34409 -40.67406 -38.93011 -36.08707 -34.38242 -33.53815 -32.29588 -30.75456 -29.72481 -27.95289 -26.99199 -24.73099 -24.38711 -22.95670 -21.70495 -21.02594 -19.79212 -19.04933 -18.30663 -17.78065 -16.77783 -16.53888 -16.31725 -16.02916 -15.54814 -15.26310 -15.11674 -14.80403 -14.57101 -14.24522 -13.87847 -13.71943 -13.64326 -13.56167 -13.13497 -13.01244 -12.95496 -12.59380 -12.52927 -12.39359 -12.24825 -12.01240 -11.83388 -11.67103 -11.16852 -10.64529 -9.86175 -9.65967 -9.09638 -9.02356 -8.20129 -6.39071 0.86768 1.29014 1.31153 1.33491 1.43415 1.86900 2.03676 2.32656 2.56059 3.05404 3.26260 3.52838 3.97476 4.05987 4.24297 4.28540 4.29715 4.31341 4.45307 4.49477 4.57373 4.73389 4.84588 4.86336 4.90725 4.99974 5.09643 5.12874 5.17568 5.21747 5.29803 5.39320 5.43413 5.70182 5.92474 5.96440 6.06812 6.12708 6.29581 6.41191 6.57567 6.80816 6.93924 7.32507 8.82599 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.004748 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.785205 B = 5895.603555 C = 6319.505697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.116 4.116 3 C -0.216 4.216 4 C 0.024 3.976 5 N -0.533 5.533 6 H 0.423 0.577 7 C -0.074 4.074 8 C 0.589 3.411 9 O -0.583 6.583 10 N -0.592 5.592 11 C 0.128 3.872 12 C 0.052 3.948 13 N -0.533 5.533 14 C 0.200 3.800 15 C -0.557 4.557 16 H 0.049 0.951 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.056 3.944 24 C 0.123 3.877 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.164 0.836 29 H 0.206 0.794 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.016 0.984 33 H 0.082 0.918 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.013 0.987 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 16.461 10.926 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.239 4.239 4 C -0.110 4.110 5 N -0.128 5.128 6 H 0.261 0.739 7 C -0.188 4.188 8 C 0.377 3.623 9 O -0.463 6.463 10 N -0.324 5.324 11 C 0.005 3.995 12 C -0.077 4.077 13 N -0.257 5.257 14 C 0.073 3.927 15 C -0.596 4.596 16 H 0.067 0.933 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.073 4.073 24 C 0.001 3.999 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.181 0.819 29 H 0.223 0.777 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.141 15.952 11.238 19.630 hybrid contribution 2.316 -1.250 -0.305 2.650 sum 0.176 14.702 10.933 18.323 Atomic orbital electron populations 1.20289 0.88994 1.03031 1.02111 1.20128 0.96187 0.91059 1.05097 1.21032 0.91771 0.99125 1.12010 1.22600 1.00772 0.82052 1.05621 1.41918 1.06282 1.08068 1.56502 0.73910 1.19744 0.86080 0.92383 1.20571 1.17558 0.76905 0.85441 0.82400 1.90777 1.57886 1.63410 1.34253 1.48193 1.57860 1.15957 1.10375 1.22031 1.03020 0.93790 0.80631 1.22364 0.95352 0.90961 0.99013 1.62430 1.56104 1.04362 1.02809 1.19449 0.92858 0.92082 0.88288 1.21954 0.95358 1.29238 1.13039 0.93261 1.25727 1.02362 0.95295 0.94950 1.70045 1.37316 1.32135 1.16634 0.85592 0.80541 0.77986 0.78039 1.19838 1.20420 1.20006 1.22199 0.98025 0.97319 0.89743 1.21788 0.98895 0.81006 0.98230 0.91689 0.89246 0.92809 0.81885 0.77708 0.88888 0.88370 0.96556 0.89928 0.97032 0.96985 0.92500 0.96874 0.90286 0.89565 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 10.20 71.23 0.73 -0.95 16 2 C -0.12 -2.64 5.81 -19.57 -0.11 -2.76 16 3 C -0.22 -3.87 10.76 22.01 0.24 -3.63 16 4 C 0.02 0.39 11.89 83.48 0.99 1.39 16 5 N -0.53 -11.46 6.10 -183.63 -1.12 -12.58 16 6 H 0.42 8.03 8.96 -92.70 -0.83 7.20 16 7 C -0.07 -1.99 5.08 40.35 0.21 -1.78 16 8 C 0.59 19.31 7.19 86.45 0.62 19.93 16 9 O -0.58 -23.15 16.56 -4.34 -0.07 -23.23 16 10 N -0.59 -18.43 3.00 -821.76 -2.47 -20.90 16 11 C 0.13 3.59 6.17 86.50 0.53 4.12 16 12 C 0.05 1.89 5.17 86.54 0.45 2.34 16 13 N -0.53 -21.85 4.83 -898.90 -4.34 -26.19 16 14 C 0.20 10.15 5.11 85.56 0.44 10.58 16 15 C -0.56 -30.32 7.76 25.60 0.20 -30.12 16 16 H 0.05 2.71 5.88 -2.91 -0.02 2.69 16 17 C 0.02 0.92 5.46 84.65 0.46 1.38 16 18 N -0.92 -53.74 13.29 21.45 0.28 -53.46 16 19 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 C 0.06 2.18 5.24 86.38 0.45 2.63 16 24 C 0.12 3.94 6.61 86.35 0.57 4.51 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.12 7.69 -2.39 -0.02 1.10 16 28 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 2.51 6.22 -2.39 -0.01 2.49 16 32 H 0.02 0.67 6.62 -2.38 -0.02 0.65 16 33 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 34 H 0.01 0.64 8.07 -2.38 -0.02 0.62 16 35 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.01 0.57 7.10 -2.39 -0.02 0.56 16 38 H 0.08 3.02 8.06 -2.39 -0.02 3.00 16 39 H 0.09 2.83 7.04 -2.39 -0.02 2.82 16 40 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -68.73 326.00 0.30 -68.43 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.22 Total: 14.66 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.77 Total: 7.63 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -7.64 Total: -113.13 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.73 0.30 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827483611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.161 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds