Wall clock time and date at job start Mon Mar 30 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 120.41674 * 2 1 4 4 N 1.31853 * 120.76544 * 179.74451 * 3 2 1 5 5 C 1.31878 * 121.72334 * 0.56925 * 4 3 2 6 6 C 1.50706 * 119.61960 * 179.70804 * 5 4 3 7 7 C 1.53000 * 109.47116 * 269.72797 * 6 5 4 8 8 N 1.46496 * 109.47378 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00347 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99806 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00180 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99977 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47075 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99927 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00008 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47310 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47255 * 120.00269 * 17 15 13 20 20 H 1.48501 * 109.47576 * 240.00502 * 17 15 13 21 21 C 1.38187 * 120.76522 * 359.43340 * 5 4 3 22 22 C 1.50704 * 120.41654 * 180.29702 * 21 5 4 23 23 C 1.38626 * 120.42512 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46880 * 269.97486 * 1 2 3 25 25 H 1.08992 * 109.47436 * 29.97879 * 1 2 3 26 26 H 1.09001 * 109.46777 * 149.97873 * 1 2 3 27 27 H 1.08009 * 119.61685 * 0.04929 * 3 2 1 28 28 H 1.09000 * 109.46646 * 29.72211 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.72928 * 6 5 4 30 30 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 31 31 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 32 32 H 0.97001 * 119.99484 * 0.02562 * 8 7 6 33 33 H 0.97001 * 119.99641 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.47238 * 299.99516 * 12 11 9 35 35 H 1.08993 * 109.47404 * 59.99661 * 12 11 9 36 36 H 0.97007 * 119.99601 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47185 * 90.00072 * 22 21 5 38 38 H 1.09001 * 109.46984 * 209.99820 * 22 21 5 39 39 H 1.09001 * 109.47353 * 329.99873 * 22 21 5 40 40 H 1.08005 * 120.78845 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2001 0.0051 5 6 4.2256 0.0826 -0.0009 6 6 5.7313 0.1471 -0.0014 7 6 6.2404 0.1693 -1.4440 8 7 7.7040 0.2326 -1.4446 9 6 8.3769 0.2613 -2.6119 10 8 7.7692 0.2351 -3.6647 11 7 9.7234 0.3191 -2.6124 12 6 10.4547 0.3509 -3.8813 13 6 11.9351 0.4149 -3.6065 14 1 12.2951 0.4308 -2.5883 15 6 12.8299 0.4532 -4.6547 16 7 12.3915 0.4344 -5.8945 17 14 14.6648 0.5333 -4.3140 18 1 14.8959 0.5437 -2.8471 19 1 15.3314 -0.6517 -4.9113 20 1 15.2259 1.7711 -4.9127 21 6 3.5948 -1.1469 -0.0010 22 6 4.4029 -2.4190 -0.0010 23 6 2.2090 -1.1954 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6674 2.1277 0.0008 28 1 6.0563 1.0518 0.5125 29 1 6.1326 -0.7266 0.5121 30 1 5.9153 -0.7353 -1.9580 31 1 5.8390 1.0430 -1.9576 32 1 8.1888 0.2532 -0.6046 33 1 10.2081 0.3404 -1.7725 34 1 10.2297 -0.5495 -4.4531 35 1 10.1533 1.2288 -4.4526 36 1 13.0211 0.4617 -6.6320 37 1 4.5977 -2.7258 1.0266 38 1 3.8464 -3.2029 -0.5149 39 1 5.3489 -2.2486 -0.5148 40 1 1.6890 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847362564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:01 Heat of formation + Delta-G solvation = -18.446593 kcal Electronic energy + Delta-G solvation = -20249.107363 eV Core-core repulsion = 17062.981868 eV Total energy + Delta-G solvation = -3186.125495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74883 -39.10526 -35.81841 -34.13656 -33.84326 -33.69158 -32.26592 -30.48929 -27.72112 -27.40553 -26.30059 -23.81892 -22.67997 -22.04872 -20.94044 -20.10392 -18.05816 -17.24536 -16.40200 -16.12090 -15.57898 -15.16072 -14.83187 -14.66875 -14.50827 -13.89253 -13.74819 -13.44087 -13.37252 -13.20387 -12.87599 -12.78505 -12.75814 -12.64558 -11.95549 -11.91979 -11.79734 -11.51393 -11.25013 -10.89583 -10.86932 -10.27174 -9.80123 -9.63403 -9.36487 -9.31399 -8.85439 -8.73928 -8.63441 -7.70675 -6.12098 -4.18336 0.82124 1.04178 3.26347 3.28572 3.34066 3.37494 3.56551 4.01678 4.11711 4.35327 4.41668 4.47948 4.60104 4.71015 4.87940 4.98882 5.11431 5.14210 5.18637 5.23921 5.24015 5.29853 5.34566 5.47230 5.51099 5.69410 5.76644 5.88798 5.99851 6.08189 6.09712 6.49188 6.89917 7.17186 7.56770 7.60058 7.61935 7.79976 7.95437 8.08817 8.81030 8.99834 9.38325 9.52803 10.98250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047164 B = 0.002525 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.536119 B =11086.706758 C =11172.069745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.141 4.141 3 C 0.095 3.905 4 N -0.472 5.472 5 C 0.129 3.871 6 C -0.083 4.083 7 C 0.151 3.849 8 N -0.758 5.758 9 C 0.693 3.307 10 O -0.601 6.601 11 N -0.730 5.730 12 C 0.266 3.734 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.062 3.938 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.079 4.079 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.392 0.608 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 -3.652 16.668 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C -0.063 4.063 4 N -0.179 5.179 5 C -0.009 4.009 6 C -0.122 4.122 7 C 0.025 3.975 8 N -0.415 5.415 9 C 0.393 3.607 10 O -0.480 6.480 11 N -0.382 5.382 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.126 4.126 22 C -0.174 4.174 23 C -0.104 4.104 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.225 0.775 33 H 0.218 0.782 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.067 -2.863 15.440 26.276 hybrid contribution 0.883 -0.688 0.842 1.401 sum -20.184 -3.551 16.281 26.174 Atomic orbital electron populations 1.20708 0.90239 1.03176 1.02477 1.20929 0.97550 0.94207 1.01569 1.22629 0.89663 0.97486 0.96529 1.67487 1.08241 1.30824 1.11371 1.20844 0.95898 0.87939 0.96205 1.20737 0.89182 1.04307 0.97949 1.20899 0.79661 1.02387 0.94506 1.45109 1.06374 1.82459 1.07604 1.16132 0.82694 0.78404 0.83519 1.90873 1.68191 1.58598 1.30344 1.45705 1.03439 1.77194 1.11861 1.18979 0.89592 0.97587 0.79337 1.21273 0.90565 1.52737 0.93288 0.91887 1.24956 0.99499 0.94852 0.94832 1.69995 1.34874 1.49093 0.98342 0.86357 0.84404 0.77713 0.78374 1.19675 1.20847 1.20832 1.20754 0.94514 0.96549 1.00803 1.20855 1.00198 0.93675 1.02701 1.21366 0.93269 0.98222 0.97573 0.90992 0.91113 0.91367 0.82869 0.89233 0.89438 0.91974 0.91601 0.77546 0.78166 0.95759 0.95762 0.92548 0.90751 0.91171 0.90323 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.04 36.01 0.36 -0.23 16 2 C -0.14 -1.20 5.90 -104.48 -0.62 -1.81 16 3 C 0.09 0.95 10.86 -17.55 -0.19 0.76 16 4 N -0.47 -5.84 10.27 -9.47 -0.10 -5.93 16 5 C 0.13 1.48 6.03 -82.59 -0.50 0.98 16 6 C -0.08 -0.87 4.93 -27.88 -0.14 -1.01 16 7 C 0.15 2.12 5.52 -4.04 -0.02 2.10 16 8 N -0.76 -11.65 5.56 -65.23 -0.36 -12.02 16 9 C 0.69 14.83 8.57 -86.92 -0.74 14.09 16 10 O -0.60 -15.68 16.34 5.29 0.09 -15.60 16 11 N -0.73 -16.03 5.55 -66.42 -0.37 -16.40 16 12 C 0.27 7.29 5.43 -5.20 -0.03 7.26 16 13 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 14 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 17 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.12 -1.21 5.90 -104.48 -0.62 -1.83 16 22 C -0.12 -0.91 9.21 36.01 0.33 -0.58 16 23 C -0.08 -0.68 9.55 -39.28 -0.37 -1.05 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 27 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.73 6.69 -51.93 -0.35 0.38 16 30 H 0.06 0.92 7.41 -51.93 -0.38 0.53 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 33 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.08 0.67 5.87 -51.93 -0.31 0.36 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -35.25 340.49 -8.75 -43.99 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.90 Total: 5.43 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.95 Total: 5.08 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.09 Total: -60.12 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.09 Total: -15.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.25 -8.75 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847362564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.548 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds