Wall clock time and date at job start Mon Mar 30 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 120.41674 * 2 1 4 4 N 1.31853 * 120.76544 * 179.74451 * 3 2 1 5 5 C 1.31878 * 121.72334 * 0.56925 * 4 3 2 6 6 C 1.50706 * 119.61960 * 179.70804 * 5 4 3 7 7 C 1.53000 * 109.47116 * 269.72797 * 6 5 4 8 8 N 1.46496 * 109.47378 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00347 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99806 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00180 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99977 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47075 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99927 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00008 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47310 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47255 * 120.00269 * 17 15 13 20 20 H 1.48501 * 109.47576 * 240.00502 * 17 15 13 21 21 C 1.38187 * 120.76522 * 359.43340 * 5 4 3 22 22 C 1.50704 * 120.41654 * 180.29702 * 21 5 4 23 23 C 1.38626 * 120.42512 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.46880 * 269.97486 * 1 2 3 25 25 H 1.08992 * 109.47436 * 29.97879 * 1 2 3 26 26 H 1.09001 * 109.46777 * 149.97873 * 1 2 3 27 27 H 1.08009 * 119.61685 * 0.04929 * 3 2 1 28 28 H 1.09000 * 109.46646 * 29.72211 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.72928 * 6 5 4 30 30 H 1.09000 * 109.47214 * 300.00167 * 7 6 5 31 31 H 1.09008 * 109.47142 * 59.99333 * 7 6 5 32 32 H 0.97001 * 119.99484 * 0.02562 * 8 7 6 33 33 H 0.97001 * 119.99641 * 359.97438 * 11 9 8 34 34 H 1.09006 * 109.47238 * 299.99516 * 12 11 9 35 35 H 1.08993 * 109.47404 * 59.99661 * 12 11 9 36 36 H 0.97007 * 119.99601 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47185 * 90.00072 * 22 21 5 38 38 H 1.09001 * 109.46984 * 209.99820 * 22 21 5 39 39 H 1.09001 * 109.47353 * 329.99873 * 22 21 5 40 40 H 1.08005 * 120.78845 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2001 0.0051 5 6 4.2256 0.0826 -0.0009 6 6 5.7313 0.1471 -0.0014 7 6 6.2404 0.1693 -1.4440 8 7 7.7040 0.2326 -1.4446 9 6 8.3769 0.2613 -2.6119 10 8 7.7692 0.2351 -3.6647 11 7 9.7234 0.3191 -2.6124 12 6 10.4547 0.3509 -3.8813 13 6 11.9351 0.4149 -3.6065 14 1 12.2951 0.4308 -2.5883 15 6 12.8299 0.4532 -4.6547 16 7 12.3915 0.4344 -5.8945 17 14 14.6648 0.5333 -4.3140 18 1 14.8959 0.5437 -2.8471 19 1 15.3314 -0.6517 -4.9113 20 1 15.2259 1.7711 -4.9127 21 6 3.5948 -1.1469 -0.0010 22 6 4.4029 -2.4190 -0.0010 23 6 2.2090 -1.1954 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6674 2.1277 0.0008 28 1 6.0563 1.0518 0.5125 29 1 6.1326 -0.7266 0.5121 30 1 5.9153 -0.7353 -1.9580 31 1 5.8390 1.0430 -1.9576 32 1 8.1888 0.2532 -0.6046 33 1 10.2081 0.3404 -1.7725 34 1 10.2297 -0.5495 -4.4531 35 1 10.1533 1.2288 -4.4526 36 1 13.0211 0.4617 -6.6320 37 1 4.5977 -2.7258 1.0266 38 1 3.8464 -3.2029 -0.5149 39 1 5.3489 -2.2486 -0.5148 40 1 1.6890 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847362564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:01 Heat of formation + Delta-G solvation = -44.245607 kcal Electronic energy + Delta-G solvation = -20250.226092 eV Core-core repulsion = 17062.981868 eV Total energy + Delta-G solvation = -3187.244224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50356 -40.81190 -37.00414 -36.04258 -34.86861 -34.54445 -34.25939 -31.54808 -29.19769 -28.31843 -27.36141 -25.06853 -24.15032 -23.17423 -21.97192 -21.56676 -19.81481 -18.05903 -17.99253 -17.53265 -16.98602 -16.64456 -16.39087 -15.69951 -15.35407 -15.22418 -15.06969 -14.91224 -14.05646 -14.04873 -14.01189 -13.97466 -13.72455 -13.52066 -13.31700 -13.20247 -12.86889 -12.74982 -12.73481 -12.39247 -12.20363 -12.10974 -11.43530 -11.28824 -10.80878 -10.48020 -10.37182 -10.29535 -9.59324 -9.56954 -8.27278 -6.43638 0.09700 0.33842 1.44569 1.46355 1.59537 1.86191 2.23847 2.40526 2.75368 3.07749 3.32805 3.58699 3.78896 3.86857 3.91375 4.00896 4.07918 4.21059 4.32472 4.44418 4.58438 4.76081 4.79891 4.83028 4.84877 4.93863 5.00672 5.10934 5.15347 5.27943 5.28551 5.32840 5.35588 5.48472 5.51122 5.68725 5.82712 5.86208 6.27701 6.68493 7.05076 7.25576 7.32901 7.72391 8.85440 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047164 B = 0.002525 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.536119 B =11086.706758 C =11172.069745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.073 3.927 4 N -0.504 5.504 5 C 0.101 3.899 6 C -0.068 4.068 7 C 0.156 3.844 8 N -0.729 5.729 9 C 0.691 3.309 10 O -0.652 6.652 11 N -0.722 5.722 12 C 0.284 3.716 13 C -0.553 4.553 14 H 0.085 0.915 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.988 3.012 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.129 4.129 22 C -0.116 4.116 23 C -0.087 4.087 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.169 0.831 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.414 0.586 33 H 0.406 0.594 34 H -0.014 1.014 35 H -0.016 1.016 36 H 0.269 0.731 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.955 -4.491 19.201 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C -0.084 4.084 4 N -0.212 5.212 5 C -0.037 4.037 6 C -0.106 4.106 7 C 0.031 3.969 8 N -0.387 5.387 9 C 0.390 3.610 10 O -0.535 6.535 11 N -0.375 5.375 12 C 0.161 3.839 13 C -0.591 4.591 14 H 0.103 0.897 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.811 3.189 18 H -0.176 1.176 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.131 4.131 22 C -0.173 4.173 23 C -0.112 4.112 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.186 0.814 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.251 0.749 33 H 0.242 0.758 34 H 0.004 0.996 35 H 0.002 0.998 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.996 -3.703 18.077 27.952 hybrid contribution 0.687 -0.428 0.058 0.811 sum -20.308 -4.131 18.135 27.539 Atomic orbital electron populations 1.20775 0.87929 1.04101 1.03563 1.21289 0.99220 0.93629 0.99705 1.23012 0.89289 0.99008 0.97073 1.67425 1.09570 1.31815 1.12395 1.20967 0.96070 0.88567 0.98074 1.20616 0.89203 1.05651 0.95142 1.20924 0.78199 1.00769 0.97045 1.44817 1.06991 1.80294 1.06621 1.16315 0.82393 0.77940 0.84333 1.90839 1.69104 1.60678 1.32855 1.45277 1.03775 1.77479 1.11014 1.18423 0.90758 0.93922 0.80814 1.21636 0.90354 1.52579 0.94490 0.89666 1.26099 1.05406 0.93947 0.94360 1.70159 1.37102 1.50045 0.99729 0.85066 0.76966 0.77630 0.79241 1.17551 1.20418 1.20540 1.21024 0.95389 0.96656 1.00027 1.20892 0.99546 0.93025 1.03803 1.21750 0.93067 0.99429 0.96991 0.89663 0.90382 0.90288 0.81377 0.88974 0.86848 0.92687 0.94300 0.74927 0.75828 0.99592 0.99850 0.92260 0.89014 0.90093 0.91274 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.04 71.24 0.72 -0.19 16 2 C -0.14 -2.12 5.90 -19.77 -0.12 -2.23 16 3 C 0.07 1.44 10.86 84.69 0.92 2.36 16 4 N -0.50 -12.49 10.27 -183.87 -1.89 -14.38 16 5 C 0.10 2.25 6.03 42.54 0.26 2.51 16 6 C -0.07 -1.36 4.93 29.85 0.15 -1.21 16 7 C 0.16 4.39 5.52 86.38 0.48 4.87 16 8 N -0.73 -22.02 5.56 -478.54 -2.66 -24.68 16 9 C 0.69 30.09 8.57 179.06 1.53 31.62 16 10 O -0.65 -35.49 16.34 -3.97 -0.06 -35.56 16 11 N -0.72 -31.97 5.55 -482.31 -2.68 -34.65 16 12 C 0.28 16.15 5.43 85.63 0.46 16.61 16 13 C -0.55 -30.54 9.28 25.60 0.24 -30.30 16 14 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 17 Si 0.99 42.72 29.54 68.60 2.03 44.74 16 18 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.13 -2.35 5.90 -19.77 -0.12 -2.46 16 22 C -0.12 -1.57 9.21 71.24 0.66 -0.91 16 23 C -0.09 -1.34 9.55 22.46 0.21 -1.13 16 24 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 26 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 27 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 1.65 6.69 -2.39 -0.02 1.63 16 30 H 0.05 1.65 7.41 -2.39 -0.02 1.63 16 31 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.41 9.00 8.49 -92.71 -0.79 8.21 16 33 H 0.41 14.59 8.34 -92.71 -0.77 13.82 16 34 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.07 1.07 5.87 -2.39 -0.01 1.06 16 40 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -79.73 340.49 0.37 -79.36 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.50 Total: 21.89 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 5.85 Total: 20.06 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -6.94 Total: -130.49 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.06 Total: -35.56 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -79.73 0.37 -79.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847362564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.115 kcal (2) G-P(sol) polarization free energy of solvation -79.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds