Wall clock time and date at job start Mon Mar 30 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35317 * 126.12230 * 2 1 4 4 C 1.39870 * 107.91616 * 179.97438 * 3 2 1 5 5 N 1.30838 * 108.20593 * 359.73979 * 4 3 2 6 6 N 1.34944 * 126.12729 * 179.97438 * 2 1 3 7 7 C 1.46493 * 126.04065 * 359.97438 * 6 2 1 8 8 C 1.50699 * 109.47054 * 90.00118 * 7 6 2 9 9 O 1.21290 * 120.00194 * 6.48517 * 8 7 6 10 10 N 1.34783 * 120.00425 * 186.48309 * 8 7 6 11 11 C 1.37105 * 119.99316 * 3.59925 * 10 8 7 12 12 H 1.08005 * 119.99306 * 127.00904 * 11 10 8 13 13 C 1.38943 * 120.00093 * 307.00979 * 11 10 8 14 14 N 1.31409 * 120.00270 * 335.37609 * 13 11 10 15 15 Si 1.86809 * 119.99673 * 155.37764 * 13 11 10 16 16 H 1.48494 * 109.47121 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46871 * 120.00047 * 15 13 11 18 18 H 1.48496 * 109.46869 * 239.99864 * 15 13 11 19 19 C 1.46489 * 120.00434 * 183.60013 * 10 8 7 20 20 C 1.54971 * 110.92424 * 126.53964 * 19 10 8 21 21 C 1.54268 * 104.15776 * 156.29629 * 20 19 10 22 22 C 1.53868 * 106.64160 * 336.44596 * 21 20 19 23 23 C 1.54261 * 106.59951 * 359.97438 * 22 21 20 24 24 H 1.08990 * 109.47260 * 270.01774 * 1 2 3 25 25 H 1.09000 * 109.47328 * 30.02404 * 1 2 3 26 26 H 1.09001 * 109.46766 * 150.02242 * 1 2 3 27 27 H 1.08002 * 126.04338 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.89621 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47098 * 330.00472 * 7 6 2 30 30 H 1.08993 * 109.47575 * 210.00132 * 7 6 2 31 31 H 0.97000 * 120.00023 * 175.11939 * 14 13 11 32 32 H 1.08999 * 110.67618 * 3.23692 * 19 10 8 33 33 H 1.08994 * 110.47393 * 37.64260 * 20 19 10 34 34 H 1.08998 * 110.52867 * 274.97327 * 20 19 10 35 35 H 1.09002 * 110.02628 * 217.13454 * 21 20 19 36 36 H 1.09004 * 110.03221 * 95.75821 * 21 20 19 37 37 H 1.09002 * 110.03082 * 119.26322 * 22 21 20 38 38 H 1.09008 * 110.03423 * 240.64344 * 22 21 20 39 39 H 1.09001 * 110.48803 * 142.29070 * 23 22 21 40 40 H 1.09008 * 110.48654 * 264.79817 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 7 3.6334 -0.6523 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 2.0518 -2.2564 -2.3391 10 7 1.1706 -4.1783 -1.6666 11 6 0.7048 -4.9472 -0.6314 12 1 -0.2992 -5.3440 -0.6628 13 6 1.5244 -5.2158 0.4579 14 7 2.8310 -5.1781 0.3223 15 14 0.7690 -5.6307 2.1153 16 1 -0.7116 -5.6070 2.0042 17 1 1.2127 -6.9838 2.5367 18 1 1.2054 -4.6306 3.1225 19 6 1.0930 -4.6768 -3.0419 20 6 1.7515 -6.0745 -3.1619 21 6 1.0836 -6.7010 -4.4034 22 6 -0.2689 -5.9894 -4.5823 23 6 -0.3769 -4.9551 -3.4429 24 1 -0.3633 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9740 2.1212 -0.0004 28 1 4.5083 1.2893 0.0011 29 1 0.8957 -2.5575 0.5158 30 1 2.5901 -3.1026 0.5156 31 1 3.4026 -5.2955 1.0972 32 1 1.5553 -3.9722 -3.7333 33 1 1.5429 -6.6717 -2.2743 34 1 2.8265 -5.9788 -3.3145 35 1 0.9261 -7.7677 -4.2442 36 1 1.7078 -6.5431 -5.2829 37 1 -0.3007 -5.4855 -5.5483 38 1 -1.0829 -6.7110 -4.5109 39 1 -0.8542 -4.0426 -3.7999 40 1 -0.9318 -5.3708 -2.6017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859489536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:53 Heat of formation + Delta-G solvation = 36.710905 kcal Electronic energy + Delta-G solvation = -22545.800078 eV Core-core repulsion = 19362.066391 eV Total energy + Delta-G solvation = -3183.733686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61756 -38.91840 -36.76502 -34.38467 -32.65197 -31.71724 -31.27147 -28.03338 -27.67760 -26.46392 -26.02871 -24.81816 -20.89408 -20.24110 -19.77428 -19.59414 -18.81612 -16.90250 -16.24889 -15.61273 -15.41511 -14.78015 -14.65213 -14.25777 -14.05617 -13.41295 -13.25594 -13.03334 -12.67073 -12.57796 -12.47906 -12.17789 -11.86978 -11.68657 -11.58947 -11.37316 -11.19724 -10.87942 -10.73055 -10.61753 -10.46333 -10.40393 -9.95041 -9.88988 -9.73617 -9.06869 -8.95174 -8.33749 -7.81264 -7.47322 -6.58124 -4.42219 2.50983 2.98515 3.11059 3.14108 3.19984 3.42721 3.83705 3.96776 4.62122 4.67658 5.16475 5.27274 5.27671 5.34522 5.44445 5.51888 5.78914 5.90903 6.04525 6.05699 6.07181 6.14975 6.16189 6.19340 6.23016 6.29587 6.38069 6.44500 6.45391 6.54656 6.61353 6.69696 6.89518 6.99972 7.19025 7.26849 7.28612 7.68386 7.82093 8.40910 8.45354 8.71393 9.38060 9.82353 10.41584 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.007349 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.479445 B = 3809.013704 C = 4783.224171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.086 3.914 3 C -0.290 4.290 4 C 0.029 3.971 5 N -0.284 5.284 6 N -0.335 5.335 7 C 0.116 3.884 8 C 0.498 3.502 9 O -0.593 6.593 10 N -0.441 5.441 11 C -0.343 4.343 12 H 0.089 0.911 13 C 0.046 3.954 14 N -0.842 5.842 15 Si 0.894 3.106 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.275 1.275 19 C 0.135 3.865 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.174 0.826 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.274 0.726 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 2.826 -0.375 6.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.043 4.043 3 C -0.320 4.320 4 C -0.157 4.157 5 N -0.105 5.105 6 N -0.117 5.117 7 C -0.008 4.008 8 C 0.286 3.714 9 O -0.477 6.477 10 N -0.161 5.161 11 C -0.470 4.470 12 H 0.106 0.894 13 C -0.162 4.162 14 N -0.476 5.476 15 Si 0.719 3.281 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.200 1.200 19 C 0.030 3.970 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.191 0.809 29 H 0.124 0.876 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.666 1.840 -0.754 5.072 hybrid contribution -0.580 0.298 0.858 1.077 sum -5.245 2.137 0.103 5.665 Atomic orbital electron populations 1.20406 0.88072 1.03789 1.02682 1.21043 0.94550 0.87734 1.01004 1.21022 0.92487 0.98238 1.20228 1.23651 0.97695 0.92490 1.01817 1.77370 0.97493 1.12568 1.23110 1.48422 1.03360 1.05771 1.54150 1.21974 1.03158 0.77274 0.98348 1.20291 0.79663 0.81746 0.89663 1.90573 1.54472 1.56519 1.46098 1.43238 1.55111 1.12862 1.04859 1.19322 0.97894 1.32970 0.96863 0.89383 1.25661 0.94732 0.94988 1.00858 1.70129 1.02937 1.43581 1.30988 0.86385 0.80264 0.78899 0.82544 1.18634 1.20265 1.19988 1.21943 0.94157 0.94860 0.85998 1.22491 0.98721 0.96715 0.97637 1.22088 0.96254 0.99207 0.98502 1.22035 0.97322 0.97928 0.98396 1.22592 0.98177 0.97926 0.97972 0.90624 0.90119 0.90947 0.84436 0.80868 0.87624 0.84342 0.91567 0.90075 0.89720 0.92677 0.92479 0.92742 0.92618 0.92461 0.92730 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.90 36.01 0.36 -1.00 16 2 C 0.09 1.65 6.93 -82.26 -0.57 1.08 16 3 C -0.29 -5.11 10.72 -40.01 -0.43 -5.54 16 4 C 0.03 0.54 12.03 -17.36 -0.21 0.33 16 5 N -0.28 -6.51 12.58 30.63 0.39 -6.13 16 6 N -0.34 -7.55 3.11 -58.32 -0.18 -7.73 16 7 C 0.12 2.68 4.72 -5.20 -0.02 2.66 16 8 C 0.50 12.62 7.31 -10.98 -0.08 12.54 16 9 O -0.59 -16.65 15.83 5.55 0.09 -16.56 16 10 N -0.44 -10.48 2.48 -105.58 -0.26 -10.75 16 11 C -0.34 -7.93 6.90 -14.93 -0.10 -8.03 16 12 H 0.09 1.98 6.95 -52.48 -0.36 1.61 16 13 C 0.05 1.05 3.47 -17.47 -0.06 0.99 16 14 N -0.84 -21.07 11.47 55.50 0.64 -20.43 16 15 Si 0.89 17.81 29.62 -169.99 -5.04 12.78 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 C 0.13 2.90 3.28 -65.90 -0.22 2.69 16 20 C -0.12 -2.35 6.36 -25.03 -0.16 -2.51 16 21 C -0.12 -1.95 6.80 -25.62 -0.17 -2.13 16 22 C -0.12 -1.80 6.80 -25.62 -0.17 -1.98 16 23 C -0.13 -2.31 6.39 -25.08 -0.16 -2.47 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.16 7.72 -51.93 -0.40 0.76 16 27 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 28 H 0.17 2.52 8.06 -52.48 -0.42 2.10 16 29 H 0.11 2.21 7.29 -51.93 -0.38 1.84 16 30 H 0.14 3.46 5.44 -51.93 -0.28 3.17 16 31 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 32 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16 33 H 0.08 1.85 7.10 -51.93 -0.37 1.48 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.37 6.71 -51.92 -0.35 1.02 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -29.81 325.80 -7.33 -37.14 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.87 Total: 10.14 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.00 Total: -3.37 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.58 Total: -45.03 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.09 Total: -16.56 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.04 Total: 12.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.81 -7.33 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859489536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.850 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds