Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35317 * 126.12230 * 2 1 4 4 C 1.39870 * 107.91616 * 179.97438 * 3 2 1 5 5 N 1.30838 * 108.20593 * 359.73979 * 4 3 2 6 6 N 1.34944 * 126.12729 * 179.97438 * 2 1 3 7 7 C 1.46493 * 126.04065 * 359.97438 * 6 2 1 8 8 C 1.50699 * 109.47054 * 90.00118 * 7 6 2 9 9 O 1.21290 * 120.00194 * 6.48517 * 8 7 6 10 10 N 1.34783 * 120.00425 * 186.48309 * 8 7 6 11 11 C 1.37105 * 119.99316 * 3.59925 * 10 8 7 12 12 H 1.08005 * 119.99306 * 127.00904 * 11 10 8 13 13 C 1.38943 * 120.00093 * 307.00979 * 11 10 8 14 14 N 1.31409 * 120.00270 * 335.37609 * 13 11 10 15 15 Si 1.86809 * 119.99673 * 155.37764 * 13 11 10 16 16 H 1.48494 * 109.47121 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46871 * 120.00047 * 15 13 11 18 18 H 1.48496 * 109.46869 * 239.99864 * 15 13 11 19 19 C 1.46489 * 120.00434 * 183.60013 * 10 8 7 20 20 C 1.54971 * 110.92424 * 126.53964 * 19 10 8 21 21 C 1.54268 * 104.15776 * 156.29629 * 20 19 10 22 22 C 1.53868 * 106.64160 * 336.44596 * 21 20 19 23 23 C 1.54261 * 106.59951 * 359.97438 * 22 21 20 24 24 H 1.08990 * 109.47260 * 270.01774 * 1 2 3 25 25 H 1.09000 * 109.47328 * 30.02404 * 1 2 3 26 26 H 1.09001 * 109.46766 * 150.02242 * 1 2 3 27 27 H 1.08002 * 126.04338 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.89621 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47098 * 330.00472 * 7 6 2 30 30 H 1.08993 * 109.47575 * 210.00132 * 7 6 2 31 31 H 0.97000 * 120.00023 * 175.11939 * 14 13 11 32 32 H 1.08999 * 110.67618 * 3.23692 * 19 10 8 33 33 H 1.08994 * 110.47393 * 37.64260 * 20 19 10 34 34 H 1.08998 * 110.52867 * 274.97327 * 20 19 10 35 35 H 1.09002 * 110.02628 * 217.13454 * 21 20 19 36 36 H 1.09004 * 110.03221 * 95.75821 * 21 20 19 37 37 H 1.09002 * 110.03082 * 119.26322 * 22 21 20 38 38 H 1.09008 * 110.03423 * 240.64344 * 22 21 20 39 39 H 1.09001 * 110.48803 * 142.29070 * 23 22 21 40 40 H 1.09008 * 110.48654 * 264.79817 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 7 3.6334 -0.6523 0.0066 6 7 2.3026 -1.0900 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 2.0518 -2.2564 -2.3391 10 7 1.1706 -4.1783 -1.6666 11 6 0.7048 -4.9472 -0.6314 12 1 -0.2992 -5.3440 -0.6628 13 6 1.5244 -5.2158 0.4579 14 7 2.8310 -5.1781 0.3223 15 14 0.7690 -5.6307 2.1153 16 1 -0.7116 -5.6070 2.0042 17 1 1.2127 -6.9838 2.5367 18 1 1.2054 -4.6306 3.1225 19 6 1.0930 -4.6768 -3.0419 20 6 1.7515 -6.0745 -3.1619 21 6 1.0836 -6.7010 -4.4034 22 6 -0.2689 -5.9894 -4.5823 23 6 -0.3769 -4.9551 -3.4429 24 1 -0.3633 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9740 2.1212 -0.0004 28 1 4.5083 1.2893 0.0011 29 1 0.8957 -2.5575 0.5158 30 1 2.5901 -3.1026 0.5156 31 1 3.4026 -5.2955 1.0972 32 1 1.5553 -3.9722 -3.7333 33 1 1.5429 -6.6717 -2.2743 34 1 2.8265 -5.9788 -3.3145 35 1 0.9261 -7.7677 -4.2442 36 1 1.7078 -6.5431 -5.2829 37 1 -0.3007 -5.4855 -5.5483 38 1 -1.0829 -6.7110 -4.5109 39 1 -0.8542 -4.0426 -3.7999 40 1 -0.9318 -5.3708 -2.6017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859489536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = 19.481860 kcal Electronic energy + Delta-G solvation = -22546.547185 eV Core-core repulsion = 19362.066391 eV Total energy + Delta-G solvation = -3184.480794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14490 -40.70139 -38.42126 -36.22054 -34.22646 -33.44862 -32.77862 -29.51122 -29.28015 -27.85284 -27.67756 -26.58906 -22.52360 -21.78339 -21.46725 -21.02826 -20.39647 -18.72542 -17.90248 -17.28824 -17.11726 -16.35746 -16.25390 -15.95877 -15.60726 -14.95376 -14.75900 -14.49319 -14.24957 -14.15745 -13.75701 -13.58159 -13.51784 -13.41290 -13.05197 -12.93688 -12.82546 -12.59102 -12.22576 -12.07031 -12.01956 -11.91973 -11.45670 -11.41613 -11.20153 -10.92332 -10.71937 -10.01775 -9.36840 -9.30564 -8.40205 -6.30355 1.00892 1.38552 1.47081 1.58743 1.64367 1.93016 2.02083 2.26978 2.83479 2.93666 3.77282 3.83894 3.85074 3.90362 4.06839 4.21462 4.29921 4.39088 4.55831 4.63610 4.64840 4.70575 4.71572 4.76150 4.87367 4.88263 4.89560 4.99596 5.00958 5.13233 5.19766 5.32967 5.36609 5.43746 5.49197 5.55917 5.85742 5.99345 6.19761 6.58420 6.88238 6.91194 7.48234 7.95314 8.60603 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.007349 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.479445 B = 3809.013704 C = 4783.224171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.070 3.930 3 C -0.287 4.287 4 C 0.033 3.967 5 N -0.347 5.347 6 N -0.361 5.361 7 C 0.130 3.870 8 C 0.482 3.518 9 O -0.633 6.633 10 N -0.441 5.441 11 C -0.349 4.349 12 H 0.099 0.901 13 C 0.015 3.985 14 N -0.878 5.878 15 Si 0.958 3.042 16 H -0.245 1.245 17 H -0.281 1.281 18 H -0.276 1.276 19 C 0.119 3.881 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.119 4.119 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.178 0.822 28 H 0.211 0.789 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.273 0.727 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 3.135 -0.139 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.316 4.316 4 C -0.152 4.152 5 N -0.168 5.168 6 N -0.143 5.143 7 C 0.006 3.994 8 C 0.271 3.729 9 O -0.521 6.521 10 N -0.159 5.159 11 C -0.477 4.477 12 H 0.117 0.883 13 C -0.190 4.190 14 N -0.514 5.514 15 Si 0.780 3.220 16 H -0.168 1.168 17 H -0.207 1.207 18 H -0.201 1.201 19 C 0.015 3.985 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.157 4.157 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.073 0.927 27 H 0.195 0.805 28 H 0.227 0.773 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.922 2.132 -0.525 7.262 hybrid contribution 0.176 0.256 0.753 0.815 sum -6.746 2.388 0.228 7.160 Atomic orbital electron populations 1.20559 0.85290 1.04272 1.04539 1.21923 0.96568 0.87235 1.00037 1.21530 0.91633 0.99671 1.18774 1.24400 0.99791 0.91636 0.99367 1.77299 0.98617 1.14919 1.26012 1.48430 1.03850 1.05925 1.56112 1.21656 1.02987 0.78164 0.96635 1.20784 0.79781 0.81991 0.90335 1.90516 1.56515 1.57695 1.47378 1.43473 1.53978 1.12497 1.05991 1.19600 0.98318 1.32735 0.97000 0.88318 1.26369 0.94629 0.94357 1.03630 1.70224 1.04545 1.44785 1.31847 0.85419 0.80350 0.78063 0.78168 1.16759 1.20699 1.20109 1.22175 0.96980 0.94729 0.84629 1.22387 0.97564 0.95945 0.99125 1.22058 0.96522 1.00093 0.96515 1.22027 0.97473 0.97531 0.97783 1.22510 0.95058 0.99081 0.99064 0.87967 0.87314 0.92691 0.80493 0.77256 0.86140 0.86589 0.91700 0.92837 0.91682 0.95165 0.90447 0.91520 0.90956 0.89807 0.92501 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.90 71.24 0.71 -1.77 16 2 C 0.07 2.63 6.93 41.41 0.29 2.92 16 3 C -0.29 -9.54 10.72 21.99 0.24 -9.31 16 4 C 0.03 1.22 12.03 85.24 1.02 2.24 16 5 N -0.35 -16.29 12.58 -57.02 -0.72 -17.01 16 6 N -0.36 -16.58 3.11 -338.43 -1.05 -17.63 16 7 C 0.13 6.22 4.72 85.63 0.40 6.62 16 8 C 0.48 25.48 7.31 87.66 0.64 26.12 16 9 O -0.63 -37.40 15.83 -3.06 -0.05 -37.45 16 10 N -0.44 -21.65 2.48 -606.33 -1.50 -23.15 16 11 C -0.35 -16.30 6.90 84.04 0.58 -15.72 16 12 H 0.10 4.35 6.95 -2.91 -0.02 4.33 16 13 C 0.02 0.71 3.47 84.92 0.29 1.01 16 14 N -0.88 -45.54 11.47 21.66 0.25 -45.29 16 15 Si 0.96 36.30 29.62 68.60 2.03 38.33 16 16 H -0.24 -8.53 7.11 99.48 0.71 -7.83 16 17 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 19 C 0.12 5.26 3.28 46.31 0.15 5.41 16 20 C -0.11 -4.58 6.36 31.70 0.20 -4.38 16 21 C -0.11 -3.43 6.80 31.32 0.21 -3.22 16 22 C -0.11 -3.04 6.80 31.31 0.21 -2.83 16 23 C -0.12 -4.16 6.39 31.67 0.20 -3.96 16 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.72 7.72 -2.39 -0.02 1.71 16 27 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 28 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 29 H 0.12 5.16 7.29 -2.39 -0.02 5.14 16 30 H 0.12 6.08 5.44 -2.39 -0.01 6.07 16 31 H 0.27 13.55 8.32 -92.71 -0.77 12.78 16 32 H 0.05 2.64 7.01 -2.39 -0.02 2.63 16 33 H 0.06 2.90 7.10 -2.39 -0.02 2.88 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.55 6.71 -2.38 -0.02 2.53 16 Total: -1.00 -68.48 325.80 5.14 -63.34 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 1.03 Total: 35.73 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.15 Total: 3.13 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -3.02 Total: -103.08 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.05 Total: -37.45 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -68.48 5.14 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859489536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.820 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds