Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35306 * 126.12908 * 2 1 4 4 C 1.39872 * 107.92306 * 179.90338 * 3 2 1 5 5 N 1.30837 * 108.19813 * 0.36531 * 4 3 2 6 6 N 1.34947 * 126.12086 * 180.30939 * 2 1 3 7 7 C 1.46499 * 126.04427 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.47451 * 89.99180 * 7 6 2 9 9 O 1.21282 * 119.99668 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00385 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.62743 * 359.72629 * 10 8 7 12 12 C 1.53624 * 108.54212 * 126.36521 * 11 10 8 13 13 C 1.53032 * 109.24348 * 54.85441 * 12 11 10 14 14 C 1.53041 * 109.53961 * 298.51155 * 13 12 11 15 15 H 1.08991 * 109.49895 * 301.41089 * 14 13 12 16 16 C 1.50703 * 109.49876 * 181.31337 * 14 13 12 17 17 H 1.07997 * 119.99770 * 0.15951 * 16 14 13 18 18 C 1.37876 * 120.00025 * 180.16190 * 16 14 13 19 19 N 1.31512 * 119.99915 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00071 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47021 * 120.00213 * 20 18 16 23 23 H 1.48494 * 109.47510 * 240.00107 * 20 18 16 24 24 C 1.46917 * 120.63084 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.47015 * 269.69121 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68273 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.68991 * 1 2 3 28 28 H 1.08008 * 126.04047 * 0.03777 * 3 2 1 29 29 H 1.07995 * 125.90586 * 180.14192 * 4 3 2 30 30 H 1.08997 * 109.47309 * 209.99641 * 7 6 2 31 31 H 1.09007 * 109.46761 * 329.99560 * 7 6 2 32 32 H 1.08997 * 109.59162 * 246.19855 * 11 10 8 33 33 H 1.09007 * 109.58651 * 6.62465 * 11 10 8 34 34 H 1.09002 * 109.63424 * 294.86142 * 12 11 10 35 35 H 1.09000 * 109.46136 * 174.74590 * 12 11 10 36 36 H 1.09000 * 109.46683 * 178.49124 * 13 12 11 37 37 H 1.09006 * 109.45090 * 58.52426 * 13 12 11 38 38 H 0.97003 * 119.99721 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.58986 * 353.37781 * 24 10 8 40 40 H 1.08998 * 109.58725 * 113.80367 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0022 5 7 3.6334 -0.6525 -0.0044 6 7 2.3026 -1.0901 -0.0059 7 6 1.8539 -2.4846 -0.0129 8 6 1.6993 -2.9555 -1.4361 9 8 1.9407 -2.2007 -2.3541 10 7 1.2938 -4.2158 -1.6887 11 6 1.0045 -5.1440 -0.5871 12 6 -0.4098 -5.7103 -0.7842 13 6 -0.5129 -6.3365 -2.1767 14 6 -0.2720 -5.2625 -3.2400 15 1 -1.0053 -4.4645 -3.1237 16 6 -0.4056 -5.8733 -4.6113 17 1 -0.6415 -6.9221 -4.7145 18 6 -0.2266 -5.0931 -5.7339 19 7 0.0612 -3.8160 -5.6080 20 14 -0.3914 -5.8503 -7.4335 21 1 -0.7169 -7.2933 -7.3031 22 1 -1.4774 -5.1637 -8.1781 23 1 0.8885 -5.6958 -8.1705 24 6 1.1390 -4.6895 -3.0708 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3632 0.8928 -0.5089 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9741 2.1211 0.0006 29 1 4.5085 1.2889 0.0050 30 1 2.5900 -3.1057 0.4974 31 1 0.8955 -2.5605 0.5010 32 1 1.7307 -5.9568 -0.5938 33 1 1.0575 -4.6117 0.3627 34 1 -1.1419 -4.9081 -0.6909 35 1 -0.6052 -6.4706 -0.0280 36 1 -1.5069 -6.7633 -2.3105 37 1 0.2361 -7.1220 -2.2779 38 1 0.1875 -3.2672 -6.3979 39 1 1.2808 -3.8573 -3.7603 40 1 1.8760 -5.4660 -3.2756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862160942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 38.081264 kcal Electronic energy + Delta-G solvation = -22057.740019 eV Core-core repulsion = 18874.065756 eV Total energy + Delta-G solvation = -3183.674263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12514 -39.37912 -36.77810 -33.65062 -33.09769 -31.97552 -31.75433 -29.89944 -27.52980 -26.81333 -25.10475 -24.29078 -21.93266 -21.09918 -20.43606 -19.34599 -18.31810 -17.11479 -16.61990 -16.11717 -15.23865 -15.05596 -14.55480 -14.46059 -13.95590 -13.79074 -13.62071 -13.32233 -12.87597 -12.84775 -12.69839 -12.51352 -12.44029 -11.99059 -11.94064 -11.78789 -11.06751 -10.97550 -10.56078 -10.46994 -10.44306 -10.30016 -9.97029 -9.65997 -9.19327 -9.14754 -8.83071 -8.48651 -8.29196 -7.85235 -6.04141 -4.13261 1.98664 2.56134 3.02413 3.04483 3.27525 3.36283 3.38897 3.64265 4.39491 4.62757 4.75117 4.75435 5.01997 5.11774 5.18304 5.26293 5.29487 5.38203 5.48364 5.54960 5.78067 5.84560 5.88640 5.91145 6.06055 6.22161 6.29419 6.51263 6.58114 6.75863 6.82341 6.89756 7.02922 7.14418 7.19670 7.57726 7.80160 7.89299 7.92936 8.13107 8.33038 8.71147 8.91221 9.53025 11.01093 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.004964 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.790967 B = 5639.169679 C = 6339.453428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.097 3.903 3 C -0.280 4.280 4 C 0.045 3.955 5 N -0.291 5.291 6 N -0.351 5.351 7 C 0.112 3.888 8 C 0.488 3.512 9 O -0.517 6.517 10 N -0.604 5.604 11 C 0.106 3.894 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.113 3.887 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.180 0.820 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.263 0.737 39 H 0.123 0.877 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 3.627 14.970 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.030 4.030 3 C -0.309 4.309 4 C -0.141 4.141 5 N -0.112 5.112 6 N -0.133 5.133 7 C -0.014 4.014 8 C 0.272 3.728 9 O -0.392 6.392 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.007 4.007 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.162 0.838 29 H 0.197 0.803 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.632 2.996 14.340 14.741 hybrid contribution -0.530 0.257 -0.993 1.154 sum 1.103 3.254 13.348 13.783 Atomic orbital electron populations 1.20468 0.87557 1.04489 1.02777 1.21060 0.94650 0.87260 1.00058 1.21137 0.92369 0.98673 1.18746 1.23750 0.98017 0.92197 1.00151 1.77329 0.96485 1.13140 1.24208 1.47985 1.03985 1.04634 1.56723 1.21585 1.02405 0.79893 0.97489 1.20548 0.78955 0.82866 0.90464 1.90784 1.49088 1.53647 1.45648 1.48531 1.65294 1.10420 1.09512 1.21794 0.97577 0.93391 0.89050 1.22022 0.95768 1.00148 0.99216 1.21630 1.00670 0.99252 0.93342 1.18977 0.92509 0.93307 0.93046 0.95361 1.21107 1.48990 0.95924 0.90029 0.92254 1.25060 0.94795 0.94808 0.99369 1.69889 1.46998 1.05217 1.29638 0.86531 0.77760 0.79357 0.84347 1.19748 1.20975 1.20949 1.22346 0.98811 1.01113 0.78436 0.90365 0.89504 0.90937 0.83789 0.80264 0.86430 0.86679 0.91530 0.91446 0.92081 0.92042 0.92893 0.93092 0.92662 0.85944 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.90 36.01 0.36 -0.74 16 2 C 0.10 1.45 6.93 -82.26 -0.57 0.87 16 3 C -0.28 -3.92 10.72 -40.01 -0.43 -4.35 16 4 C 0.05 0.66 12.03 -17.36 -0.21 0.45 16 5 N -0.29 -5.08 12.58 30.62 0.39 -4.69 16 6 N -0.35 -5.78 3.10 -58.31 -0.18 -5.96 16 7 C 0.11 1.63 4.89 -5.19 -0.03 1.60 16 8 C 0.49 9.60 7.77 -10.99 -0.09 9.52 16 9 O -0.52 -12.98 15.84 5.56 0.09 -12.89 16 10 N -0.60 -11.56 2.97 -172.48 -0.51 -12.07 16 11 C 0.11 1.48 6.37 -3.49 -0.02 1.46 16 12 C -0.13 -1.95 6.10 -26.39 -0.16 -2.11 16 13 C -0.11 -2.10 5.10 -26.69 -0.14 -2.23 16 14 C 0.04 0.98 2.25 -91.63 -0.21 0.77 16 15 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 16 C -0.52 -13.92 8.56 -34.44 -0.29 -14.21 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.61 11.39 55.43 0.63 -24.97 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.11 2.69 5.40 -3.69 -0.02 2.67 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.94 7.72 -51.93 -0.40 0.54 16 28 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.12 1.44 7.93 -51.93 -0.41 1.03 16 31 H 0.12 1.27 7.22 -51.92 -0.37 0.89 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 3.47 5.12 -51.93 -0.27 3.21 16 40 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -34.29 327.43 -7.53 -41.81 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.95 Total: 2.38 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.90 Total: -4.67 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.32 Total: -47.70 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.29 -7.53 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862160942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.893 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds