Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35306 * 126.12908 * 2 1 4 4 C 1.39872 * 107.92306 * 179.90338 * 3 2 1 5 5 N 1.30837 * 108.19813 * 0.36531 * 4 3 2 6 6 N 1.34947 * 126.12086 * 180.30939 * 2 1 3 7 7 C 1.46499 * 126.04427 * 359.97438 * 6 2 1 8 8 C 1.50702 * 109.47451 * 89.99180 * 7 6 2 9 9 O 1.21282 * 119.99668 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00385 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.62743 * 359.72629 * 10 8 7 12 12 C 1.53624 * 108.54212 * 126.36521 * 11 10 8 13 13 C 1.53032 * 109.24348 * 54.85441 * 12 11 10 14 14 C 1.53041 * 109.53961 * 298.51155 * 13 12 11 15 15 H 1.08991 * 109.49895 * 301.41089 * 14 13 12 16 16 C 1.50703 * 109.49876 * 181.31337 * 14 13 12 17 17 H 1.07997 * 119.99770 * 0.15951 * 16 14 13 18 18 C 1.37876 * 120.00025 * 180.16190 * 16 14 13 19 19 N 1.31512 * 119.99915 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00071 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47238 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47021 * 120.00213 * 20 18 16 23 23 H 1.48494 * 109.47510 * 240.00107 * 20 18 16 24 24 C 1.46917 * 120.63084 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.47015 * 269.69121 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68273 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.68991 * 1 2 3 28 28 H 1.08008 * 126.04047 * 0.03777 * 3 2 1 29 29 H 1.07995 * 125.90586 * 180.14192 * 4 3 2 30 30 H 1.08997 * 109.47309 * 209.99641 * 7 6 2 31 31 H 1.09007 * 109.46761 * 329.99560 * 7 6 2 32 32 H 1.08997 * 109.59162 * 246.19855 * 11 10 8 33 33 H 1.09007 * 109.58651 * 6.62465 * 11 10 8 34 34 H 1.09002 * 109.63424 * 294.86142 * 12 11 10 35 35 H 1.09000 * 109.46136 * 174.74590 * 12 11 10 36 36 H 1.09000 * 109.46683 * 178.49124 * 13 12 11 37 37 H 1.09006 * 109.45090 * 58.52426 * 13 12 11 38 38 H 0.97003 * 119.99721 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.58986 * 353.37781 * 24 10 8 40 40 H 1.08998 * 109.58725 * 113.80367 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0022 5 7 3.6334 -0.6525 -0.0044 6 7 2.3026 -1.0901 -0.0059 7 6 1.8539 -2.4846 -0.0129 8 6 1.6993 -2.9555 -1.4361 9 8 1.9407 -2.2007 -2.3541 10 7 1.2938 -4.2158 -1.6887 11 6 1.0045 -5.1440 -0.5871 12 6 -0.4098 -5.7103 -0.7842 13 6 -0.5129 -6.3365 -2.1767 14 6 -0.2720 -5.2625 -3.2400 15 1 -1.0053 -4.4645 -3.1237 16 6 -0.4056 -5.8733 -4.6113 17 1 -0.6415 -6.9221 -4.7145 18 6 -0.2266 -5.0931 -5.7339 19 7 0.0612 -3.8160 -5.6080 20 14 -0.3914 -5.8503 -7.4335 21 1 -0.7169 -7.2933 -7.3031 22 1 -1.4774 -5.1637 -8.1781 23 1 0.8885 -5.6958 -8.1705 24 6 1.1390 -4.6895 -3.0708 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3632 0.8928 -0.5089 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9741 2.1211 0.0006 29 1 4.5085 1.2889 0.0050 30 1 2.5900 -3.1057 0.4974 31 1 0.8955 -2.5605 0.5010 32 1 1.7307 -5.9568 -0.5938 33 1 1.0575 -4.6117 0.3627 34 1 -1.1419 -4.9081 -0.6909 35 1 -0.6052 -6.4706 -0.0280 36 1 -1.5069 -6.7633 -2.3105 37 1 0.2361 -7.1220 -2.2779 38 1 0.1875 -3.2672 -6.3979 39 1 1.2808 -3.8573 -3.7603 40 1 1.8760 -5.4660 -3.2756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862160942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 15.065709 kcal Electronic energy + Delta-G solvation = -22058.738049 eV Core-core repulsion = 18874.065756 eV Total energy + Delta-G solvation = -3184.672292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25875 -40.87922 -38.37954 -35.41229 -34.42338 -33.47825 -32.91426 -31.57050 -28.84575 -27.82944 -26.93952 -25.81347 -23.47734 -22.30117 -21.77793 -20.72158 -19.73682 -18.70417 -18.11729 -17.67188 -16.77987 -16.48067 -16.33357 -15.71119 -15.21959 -15.13947 -14.79677 -14.70768 -14.52546 -14.20870 -13.93954 -13.80055 -13.57979 -13.48388 -13.12551 -12.94545 -12.92121 -12.69374 -12.31217 -12.23949 -11.83050 -11.65005 -11.56783 -11.24991 -10.99466 -10.87997 -10.56246 -10.13646 -9.47686 -9.41652 -8.14486 -6.31332 0.84280 1.36562 1.38841 1.49024 1.50434 1.57211 1.95948 2.21373 2.39787 3.14241 3.45923 3.61389 3.76775 3.97378 4.07351 4.14942 4.18217 4.32361 4.33640 4.59159 4.68830 4.71769 4.78927 4.80442 4.83876 4.85835 5.00378 5.10604 5.24556 5.26884 5.27706 5.34163 5.51239 5.59969 5.76689 5.87551 5.96905 6.07167 6.30553 6.57722 6.77722 6.82368 7.21306 7.39511 8.88605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.004964 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.790967 B = 5639.169679 C = 6339.453428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 C -0.289 4.289 4 C 0.042 3.958 5 N -0.336 5.336 6 N -0.367 5.367 7 C 0.121 3.879 8 C 0.480 3.520 9 O -0.585 6.585 10 N -0.605 5.605 11 C 0.098 3.902 12 C -0.126 4.126 13 C -0.107 4.107 14 C 0.040 3.960 15 H -0.011 1.011 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.956 3.044 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.285 1.285 24 C 0.126 3.874 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.170 0.830 29 H 0.210 0.790 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 2.752 17.668 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C -0.318 4.318 4 C -0.144 4.144 5 N -0.157 5.157 6 N -0.150 5.150 7 C -0.004 4.004 8 C 0.267 3.733 9 O -0.465 6.465 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.163 4.163 13 C -0.145 4.145 14 C 0.021 3.979 15 H 0.007 0.993 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.211 1.211 24 C 0.003 3.997 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.188 0.812 29 H 0.226 0.774 30 H 0.163 0.837 31 H 0.175 0.825 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.059 2.077 17.091 17.249 hybrid contribution -0.361 0.555 -1.835 1.950 sum 0.698 2.632 15.256 15.497 Atomic orbital electron populations 1.20566 0.85504 1.04037 1.04813 1.21724 0.96167 0.87283 0.99347 1.21576 0.92112 0.99885 1.18218 1.24372 0.99556 0.91843 0.98599 1.77250 0.97677 1.14640 1.26126 1.48173 1.03937 1.05426 1.57456 1.21732 1.05330 0.79788 0.93507 1.21568 0.77268 0.82152 0.92323 1.90747 1.51975 1.55473 1.48295 1.48538 1.64770 1.11428 1.08978 1.22245 0.97590 0.93479 0.89055 1.21990 0.96024 1.01049 0.97275 1.21528 1.00726 0.97717 0.94508 1.18903 0.91393 0.93655 0.93972 0.99281 1.21584 1.47957 0.96079 0.91711 0.91940 1.25892 0.94695 0.95099 1.03330 1.70097 1.48549 1.06720 1.30114 0.85535 0.77432 0.79162 0.79740 1.18236 1.20779 1.21146 1.21701 0.98371 0.98750 0.80863 0.86912 0.88648 0.92685 0.81245 0.77356 0.83658 0.82533 0.89925 0.86472 0.92381 0.87449 0.92898 0.92647 0.93303 0.91011 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.90 71.24 0.71 -1.23 16 2 C 0.08 2.32 6.93 41.41 0.29 2.61 16 3 C -0.29 -7.67 10.72 21.99 0.24 -7.43 16 4 C 0.04 1.18 12.03 85.24 1.03 2.21 16 5 N -0.34 -11.53 12.58 -57.02 -0.72 -12.25 16 6 N -0.37 -11.67 3.10 -338.40 -1.05 -12.71 16 7 C 0.12 3.24 4.89 85.63 0.42 3.66 16 8 C 0.48 18.97 7.77 87.66 0.68 19.66 16 9 O -0.59 -30.90 15.84 -3.04 -0.05 -30.95 16 10 N -0.60 -22.96 2.97 -818.01 -2.43 -25.39 16 11 C 0.10 2.39 6.37 86.51 0.55 2.94 16 12 C -0.13 -3.21 6.10 30.81 0.19 -3.02 16 13 C -0.11 -3.90 5.10 30.62 0.16 -3.74 16 14 C 0.04 1.97 2.25 -11.45 -0.03 1.95 16 15 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 16 C -0.53 -29.28 8.56 25.60 0.22 -29.06 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.51 5.30 84.65 0.45 0.96 16 19 N -0.92 -56.26 11.39 21.45 0.24 -56.02 16 20 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.13 6.23 5.40 86.38 0.47 6.70 16 25 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.36 7.72 -2.39 -0.02 1.35 16 28 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.21 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.15 3.05 7.93 -2.39 -0.02 3.03 16 31 H 0.16 2.80 7.22 -2.38 -0.02 2.78 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 1.75 5.93 -2.38 -0.01 1.74 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.07 4.35 5.12 -2.39 -0.01 4.34 16 40 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -82.42 327.43 4.41 -78.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.02 Total: 16.54 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.36 Total: -3.81 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.95 Total: -106.37 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.95 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -82.42 4.41 -78.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862160942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.077 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds