Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35315 * 126.12278 * 2 1 4 4 C 1.39870 * 107.92072 * 179.97438 * 3 2 1 5 5 N 1.30839 * 108.20307 * 359.97438 * 4 3 2 6 6 N 1.34939 * 126.13142 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.03492 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.47165 * 89.99806 * 7 6 2 9 9 O 1.21271 * 120.00252 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99809 * 180.02562 * 8 7 6 11 11 C 1.46930 * 120.63225 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77482 * 233.58453 * 11 10 8 13 13 C 1.53042 * 109.31264 * 305.36632 * 12 11 10 14 14 C 1.53039 * 109.53797 * 61.36535 * 13 12 11 15 15 H 1.09004 * 109.49708 * 58.58543 * 14 13 12 16 16 C 1.50701 * 109.49530 * 178.64746 * 14 13 12 17 17 H 1.08004 * 120.00046 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00258 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99771 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00321 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47288 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47372 * 119.99938 * 20 18 16 23 23 H 1.48501 * 109.46868 * 239.99850 * 20 18 16 24 24 C 1.46928 * 120.63134 * 179.71799 * 10 8 7 25 25 H 1.09004 * 109.47514 * 90.03014 * 1 2 3 26 26 H 1.09001 * 109.47090 * 210.02897 * 1 2 3 27 27 H 1.09003 * 109.47687 * 330.02433 * 1 2 3 28 28 H 1.07999 * 126.04347 * 359.70814 * 3 2 1 29 29 H 1.08001 * 125.90246 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47183 * 209.99835 * 7 6 2 31 31 H 1.08999 * 109.47391 * 329.99548 * 7 6 2 32 32 H 1.08992 * 109.58413 * 353.37410 * 11 10 8 33 33 H 1.08994 * 109.58638 * 113.65605 * 11 10 8 34 34 H 1.09001 * 109.49398 * 65.31908 * 12 11 10 35 35 H 1.09002 * 109.49387 * 185.41240 * 12 11 10 36 36 H 1.09005 * 109.45532 * 181.38299 * 13 12 11 37 37 H 1.09003 * 109.46125 * 301.34298 * 13 12 11 38 38 H 0.96999 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.59223 * 246.20376 * 24 10 8 40 40 H 1.09004 * 109.58082 * 6.62854 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 0.0006 5 7 3.6334 -0.6523 0.0015 6 7 2.3026 -1.0899 0.0005 7 6 1.8539 -2.4845 0.0006 8 6 1.7006 -2.9629 -1.4202 9 8 1.9426 -2.2131 -2.3420 10 7 1.2943 -4.2242 -1.6663 11 6 0.9978 -5.1446 -0.5600 12 6 1.8106 -6.4284 -0.7554 13 6 1.5238 -7.0025 -2.1447 14 6 1.9503 -5.9935 -3.2135 15 1 3.0118 -5.7723 -3.1020 16 6 1.6983 -6.5733 -4.5815 17 1 1.2757 -7.5624 -4.6794 18 6 2.0061 -5.8406 -5.7082 19 7 2.5202 -4.6359 -5.5889 20 14 1.6931 -6.5588 -7.4038 21 1 1.1142 -7.9194 -7.2660 22 1 0.7430 -5.6887 -8.1423 23 1 2.9737 -6.6396 -8.1512 24 6 1.1342 -4.7034 -3.0460 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3634 0.8902 0.5135 28 1 1.9739 2.1211 -0.0044 29 1 4.5083 1.2893 0.0004 30 1 2.5897 -3.1029 0.5148 31 1 0.8953 -2.5578 0.5141 32 1 1.2723 -4.6787 0.3863 33 1 -0.0663 -5.3804 -0.5562 34 1 2.8734 -6.2030 -0.6670 35 1 1.5283 -7.1568 0.0048 36 1 2.0822 -7.9293 -2.2769 37 1 0.4571 -7.2046 -2.2411 38 1 2.7365 -4.1203 -6.3816 39 1 0.0814 -4.9058 -3.2427 40 1 1.4987 -3.9462 -3.7403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862160943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = 38.610639 kcal Electronic energy + Delta-G solvation = -22000.645575 eV Core-core repulsion = 18816.994267 eV Total energy + Delta-G solvation = -3183.651308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13197 -39.37723 -36.77238 -33.64526 -33.10450 -31.98754 -31.76584 -29.89300 -27.53161 -26.85141 -25.09410 -24.28649 -21.91717 -21.12464 -20.40088 -19.37079 -18.30606 -17.12853 -16.62375 -16.11494 -15.20411 -15.12151 -14.53619 -14.44997 -13.94839 -13.78801 -13.70105 -13.31495 -12.95437 -12.80639 -12.69010 -12.52395 -12.44790 -11.99378 -11.97593 -11.78060 -11.05855 -10.96517 -10.54586 -10.45160 -10.43470 -10.28738 -9.95566 -9.65916 -9.17745 -9.13971 -8.83661 -8.47433 -8.29535 -7.84738 -6.02239 -4.11642 1.98777 2.55435 3.02534 3.04027 3.28360 3.36854 3.39613 3.64953 4.40608 4.61491 4.70837 4.75242 4.97286 5.06136 5.17796 5.26473 5.27800 5.40287 5.47215 5.56264 5.74365 5.79311 5.87679 5.89282 6.08018 6.23920 6.26544 6.53036 6.59352 6.76706 6.82048 6.91306 7.03421 7.13714 7.19604 7.58974 7.81897 7.89896 7.94399 8.13360 8.34414 8.71383 8.92899 9.54471 11.02980 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.004868 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.240196 B = 5749.960080 C = 6462.613756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.093 3.907 3 C -0.280 4.280 4 C 0.045 3.955 5 N -0.287 5.287 6 N -0.350 5.350 7 C 0.112 3.888 8 C 0.488 3.512 9 O -0.517 6.517 10 N -0.604 5.604 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.114 3.886 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.181 0.819 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.263 0.737 39 H 0.043 0.957 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 5.586 14.923 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.034 4.034 3 C -0.309 4.309 4 C -0.142 4.142 5 N -0.107 5.107 6 N -0.132 5.132 7 C -0.014 4.014 8 C 0.273 3.727 9 O -0.392 6.392 10 N -0.338 5.338 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.006 4.006 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.162 0.838 29 H 0.198 0.802 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.140 4.946 14.300 15.688 hybrid contribution -0.579 0.269 -0.988 1.177 sum -4.720 5.215 13.312 15.056 Atomic orbital electron populations 1.20455 0.87682 1.03258 1.03689 1.21032 0.94566 0.87354 1.00484 1.21128 0.92381 0.98615 1.18796 1.23768 0.98025 0.92216 1.00142 1.77388 0.96348 1.13107 1.23874 1.47988 1.04019 1.04605 1.56635 1.21584 1.02396 0.79885 0.97553 1.20532 0.78849 0.82924 0.90445 1.90777 1.48869 1.54244 1.45289 1.48537 1.65536 1.10192 1.09505 1.21694 0.99688 0.91360 0.88985 1.21952 1.00127 0.95979 0.99221 1.21625 1.00350 0.99477 0.93366 1.19045 0.95838 0.90068 0.92991 0.95275 1.21108 1.43008 1.01897 0.90039 0.92263 1.25070 0.94734 0.94904 0.99361 1.69905 1.42126 1.10166 1.29485 0.86532 0.77958 0.79163 0.84345 1.19751 1.20966 1.20977 1.22405 0.98844 1.00835 0.78546 0.89884 0.91475 0.89738 0.83817 0.80228 0.86324 0.86797 0.91487 0.91595 0.92012 0.92015 0.92899 0.93114 0.92666 0.93821 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.12 36.00 0.36 -0.60 16 2 C 0.09 1.34 6.93 -82.27 -0.57 0.77 16 3 C -0.28 -3.85 10.72 -40.01 -0.43 -4.28 16 4 C 0.04 0.66 12.03 -17.36 -0.21 0.45 16 5 N -0.29 -5.13 12.58 30.63 0.39 -4.74 16 6 N -0.35 -5.77 3.10 -58.31 -0.18 -5.95 16 7 C 0.11 1.62 5.07 -5.19 -0.03 1.59 16 8 C 0.49 9.62 7.77 -10.99 -0.09 9.53 16 9 O -0.52 -12.96 15.84 5.57 0.09 -12.88 16 10 N -0.60 -11.56 2.97 -172.53 -0.51 -12.08 16 11 C 0.11 1.49 6.34 -3.71 -0.02 1.47 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 13 C -0.11 -2.12 5.10 -26.69 -0.14 -2.26 16 14 C 0.04 0.97 2.26 -91.45 -0.21 0.76 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.06 8.56 -34.44 -0.29 -14.35 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.93 11.41 55.43 0.63 -25.30 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.11 2.70 5.43 -3.51 -0.02 2.68 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.59 7.08 -51.93 -0.37 0.22 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.12 1.53 7.69 -51.93 -0.40 1.14 16 31 H 0.11 1.18 6.85 -51.93 -0.36 0.82 16 32 H 0.07 0.70 5.93 -51.93 -0.31 0.39 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.12 3.46 5.15 -51.93 -0.27 3.19 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -34.84 326.61 -7.47 -42.31 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.89 Total: 2.24 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.89 Total: -4.79 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.32 Total: -48.06 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.84 -7.47 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862160943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.922 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds