Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35315 * 126.12278 * 2 1 4 4 C 1.39870 * 107.92072 * 179.97438 * 3 2 1 5 5 N 1.30839 * 108.20307 * 359.97438 * 4 3 2 6 6 N 1.34939 * 126.13142 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.03492 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.47165 * 89.99806 * 7 6 2 9 9 O 1.21271 * 120.00252 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99809 * 180.02562 * 8 7 6 11 11 C 1.46930 * 120.63225 * 359.97438 * 10 8 7 12 12 C 1.53194 * 108.77482 * 233.58453 * 11 10 8 13 13 C 1.53042 * 109.31264 * 305.36632 * 12 11 10 14 14 C 1.53039 * 109.53797 * 61.36535 * 13 12 11 15 15 H 1.09004 * 109.49708 * 58.58543 * 14 13 12 16 16 C 1.50701 * 109.49530 * 178.64746 * 14 13 12 17 17 H 1.08004 * 120.00046 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00258 * 179.97438 * 16 14 13 19 19 N 1.31522 * 119.99771 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00321 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47288 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47372 * 119.99938 * 20 18 16 23 23 H 1.48501 * 109.46868 * 239.99850 * 20 18 16 24 24 C 1.46928 * 120.63134 * 179.71799 * 10 8 7 25 25 H 1.09004 * 109.47514 * 90.03014 * 1 2 3 26 26 H 1.09001 * 109.47090 * 210.02897 * 1 2 3 27 27 H 1.09003 * 109.47687 * 330.02433 * 1 2 3 28 28 H 1.07999 * 126.04347 * 359.70814 * 3 2 1 29 29 H 1.08001 * 125.90246 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.47183 * 209.99835 * 7 6 2 31 31 H 1.08999 * 109.47391 * 329.99548 * 7 6 2 32 32 H 1.08992 * 109.58413 * 353.37410 * 11 10 8 33 33 H 1.08994 * 109.58638 * 113.65605 * 11 10 8 34 34 H 1.09001 * 109.49398 * 65.31908 * 12 11 10 35 35 H 1.09002 * 109.49387 * 185.41240 * 12 11 10 36 36 H 1.09005 * 109.45532 * 181.38299 * 13 12 11 37 37 H 1.09003 * 109.46125 * 301.34298 * 13 12 11 38 38 H 0.96999 * 119.99901 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.59223 * 246.20376 * 24 10 8 40 40 H 1.09004 * 109.58082 * 6.62854 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 0.0006 5 7 3.6334 -0.6523 0.0015 6 7 2.3026 -1.0899 0.0005 7 6 1.8539 -2.4845 0.0006 8 6 1.7006 -2.9629 -1.4202 9 8 1.9426 -2.2131 -2.3420 10 7 1.2943 -4.2242 -1.6663 11 6 0.9978 -5.1446 -0.5600 12 6 1.8106 -6.4284 -0.7554 13 6 1.5238 -7.0025 -2.1447 14 6 1.9503 -5.9935 -3.2135 15 1 3.0118 -5.7723 -3.1020 16 6 1.6983 -6.5733 -4.5815 17 1 1.2757 -7.5624 -4.6794 18 6 2.0061 -5.8406 -5.7082 19 7 2.5202 -4.6359 -5.5889 20 14 1.6931 -6.5588 -7.4038 21 1 1.1142 -7.9194 -7.2660 22 1 0.7430 -5.6887 -8.1423 23 1 2.9737 -6.6396 -8.1512 24 6 1.1342 -4.7034 -3.0460 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3634 0.8902 0.5135 28 1 1.9739 2.1211 -0.0044 29 1 4.5083 1.2893 0.0004 30 1 2.5897 -3.1029 0.5148 31 1 0.8953 -2.5578 0.5141 32 1 1.2723 -4.6787 0.3863 33 1 -0.0663 -5.3804 -0.5562 34 1 2.8734 -6.2030 -0.6670 35 1 1.5283 -7.1568 0.0048 36 1 2.0822 -7.9293 -2.2769 37 1 0.4571 -7.2046 -2.2411 38 1 2.7365 -4.1203 -6.3816 39 1 0.0814 -4.9058 -3.2427 40 1 1.4987 -3.9462 -3.7403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862160943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = 14.811654 kcal Electronic energy + Delta-G solvation = -22001.677576 eV Core-core repulsion = 18816.994267 eV Total energy + Delta-G solvation = -3184.683309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25659 -40.87656 -38.38163 -35.41287 -34.43402 -33.48384 -32.90670 -31.58176 -28.84818 -27.81615 -26.94577 -25.81116 -23.48782 -22.33980 -21.72644 -20.75951 -19.71692 -18.70752 -18.12705 -17.66702 -16.75566 -16.53847 -16.31678 -15.69655 -15.26010 -15.08369 -14.85100 -14.75552 -14.47321 -14.21414 -13.92867 -13.77319 -13.60587 -13.51057 -13.09964 -12.94585 -12.85729 -12.69215 -12.31365 -12.24183 -11.83371 -11.66133 -11.54694 -11.25078 -11.00189 -10.88420 -10.57453 -10.14894 -9.46851 -9.41400 -8.14727 -6.32338 0.85587 1.36667 1.38244 1.49825 1.50527 1.57046 1.96027 2.22866 2.39503 3.13750 3.46077 3.61769 3.78196 3.95431 4.06499 4.16290 4.19718 4.32449 4.34006 4.59306 4.70113 4.72079 4.77600 4.80403 4.84263 4.86315 5.02195 5.08914 5.23715 5.26280 5.28087 5.32999 5.51065 5.59535 5.75867 5.86924 5.96386 6.09530 6.29390 6.58203 6.78539 6.81790 7.21950 7.38763 8.88539 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.004868 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.240196 B = 5749.960080 C = 6462.613756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 C -0.290 4.290 4 C 0.040 3.960 5 N -0.341 5.341 6 N -0.367 5.367 7 C 0.120 3.880 8 C 0.480 3.520 9 O -0.585 6.585 10 N -0.605 5.605 11 C 0.099 3.901 12 C -0.129 4.129 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.019 1.019 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.007 3.993 19 N -0.918 5.918 20 Si 0.958 3.042 21 H -0.257 1.257 22 H -0.282 1.282 23 H -0.285 1.285 24 C 0.127 3.873 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.171 0.829 29 H 0.207 0.793 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.258 0.742 39 H 0.042 0.958 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 4.889 17.558 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.319 4.319 4 C -0.146 4.146 5 N -0.162 5.162 6 N -0.149 5.149 7 C -0.004 4.004 8 C 0.267 3.733 9 O -0.465 6.465 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.167 4.167 13 C -0.143 4.143 14 C 0.018 3.982 15 H -0.001 1.001 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.557 5.557 20 Si 0.783 3.217 21 H -0.181 1.181 22 H -0.208 1.208 23 H -0.211 1.211 24 C 0.004 3.996 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.189 0.811 29 H 0.224 0.776 30 H 0.155 0.845 31 H 0.183 0.817 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.055 4.206 16.990 18.521 hybrid contribution 0.029 0.500 -1.807 1.875 sum -6.026 4.707 15.183 17.000 Atomic orbital electron populations 1.20597 0.84969 1.05849 1.03456 1.21792 0.96404 0.87026 0.99223 1.21590 0.91935 1.00018 1.18313 1.24368 0.99734 0.91821 0.98686 1.77299 0.97998 1.14745 1.26167 1.48182 1.03882 1.05522 1.57363 1.21741 1.05480 0.79624 0.93592 1.21554 0.77134 0.82291 0.92292 1.90742 1.51683 1.56126 1.47953 1.48545 1.65014 1.11166 1.09004 1.22153 1.01175 0.90050 0.88861 1.21934 0.99705 0.97504 0.97542 1.21517 1.00687 0.97823 0.94289 1.18987 0.93122 0.91982 0.94141 1.00128 1.21583 1.42085 1.01991 0.91603 0.91784 1.25933 0.94659 0.95093 1.03477 1.70126 1.43820 1.11744 1.29999 0.85499 0.77653 0.78977 0.79521 1.18093 1.20829 1.21068 1.21747 0.97933 0.98972 0.80910 0.91300 0.89351 0.86799 0.81108 0.77643 0.84456 0.81696 0.86674 0.88970 0.93390 0.87289 0.93209 0.92026 0.93325 0.93972 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 10.12 71.23 0.72 -0.93 16 2 C 0.08 2.24 6.93 41.40 0.29 2.53 16 3 C -0.29 -7.57 10.72 21.99 0.24 -7.33 16 4 C 0.04 1.15 12.03 85.24 1.02 2.18 16 5 N -0.34 -12.22 12.58 -57.02 -0.72 -12.93 16 6 N -0.37 -11.66 3.10 -338.40 -1.05 -12.71 16 7 C 0.12 3.20 5.07 85.63 0.43 3.64 16 8 C 0.48 18.93 7.77 87.66 0.68 19.61 16 9 O -0.59 -30.87 15.84 -3.00 -0.05 -30.91 16 10 N -0.60 -22.84 2.97 -818.17 -2.43 -25.26 16 11 C 0.10 2.39 6.34 86.36 0.55 2.93 16 12 C -0.13 -3.48 6.08 30.67 0.19 -3.29 16 13 C -0.11 -3.92 5.10 30.62 0.16 -3.76 16 14 C 0.04 1.86 2.26 -11.33 -0.03 1.84 16 15 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 16 C -0.53 -29.55 8.56 25.60 0.22 -29.34 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.01 0.42 5.30 84.65 0.45 0.87 16 19 N -0.92 -57.32 11.41 21.45 0.24 -57.08 16 20 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 C 0.13 6.26 5.43 86.49 0.47 6.73 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.20 7.08 -2.39 -0.02 1.19 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.21 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.14 3.13 7.69 -2.38 -0.02 3.11 16 31 H 0.17 2.59 6.85 -2.39 -0.02 2.57 16 32 H 0.12 1.73 5.93 -2.39 -0.01 1.72 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 4.24 5.15 -2.38 -0.01 4.22 16 Total: -1.00 -84.80 326.61 4.44 -80.36 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.03 Total: 16.02 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.39 Total: -4.33 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.95 Total: -107.98 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -84.80 4.44 -80.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862160943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.169 kcal (2) G-P(sol) polarization free energy of solvation -84.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds