Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34320 * 119.37701 * 2 1 4 4 C 1.47269 * 118.57051 * 180.24759 * 3 2 1 5 5 N 1.31874 * 121.17670 * 179.75741 * 4 3 2 6 6 N 1.40095 * 119.99852 * 179.72272 * 5 4 3 7 7 C 1.34514 * 120.00103 * 179.97438 * 6 5 4 8 8 O 1.21431 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00231 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47331 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47257 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00042 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00267 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47032 * 59.99817 * 17 15 13 19 19 H 1.48495 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47028 * 300.00485 * 17 15 13 21 21 C 1.47261 * 117.64565 * 359.48334 * 4 3 2 22 22 C 1.34330 * 118.56912 * 0.27640 * 21 4 3 23 23 N 1.36599 * 121.24827 * 359.97212 * 22 21 4 24 24 H 0.97000 * 118.64440 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47716 * 270.25939 * 1 2 3 26 26 H 1.09003 * 109.46873 * 30.25722 * 1 2 3 27 27 H 1.08999 * 109.47158 * 150.25452 * 1 2 3 28 28 H 1.07998 * 120.71649 * 0.02868 * 3 2 1 29 29 H 0.96999 * 120.00122 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.47238 * 300.00079 * 9 7 6 31 31 H 1.09002 * 109.47260 * 60.00118 * 9 7 6 32 32 H 1.08997 * 109.47244 * 300.00533 * 10 9 7 33 33 H 1.09002 * 109.46787 * 59.99908 * 10 9 7 34 34 H 1.08997 * 109.47365 * 300.00556 * 11 10 9 35 35 H 1.09004 * 109.46747 * 59.99765 * 11 10 9 36 36 H 1.09005 * 109.47124 * 300.00323 * 12 11 10 37 37 H 1.09004 * 109.47330 * 60.00120 * 12 11 10 38 38 H 0.97000 * 120.00297 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.71746 * 180.29049 * 21 4 3 40 40 H 1.08000 * 119.37516 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1659 1.1705 0.0000 4 6 3.6384 1.1498 -0.0056 5 7 4.3369 2.2683 -0.0106 6 7 5.7370 2.2198 -0.0100 7 6 6.4495 3.3607 -0.0157 8 8 5.8791 4.4328 -0.0218 9 6 7.9556 3.3086 -0.0144 10 6 8.5153 4.7326 -0.0223 11 6 10.0443 4.6797 -0.0204 12 6 10.6039 6.1036 -0.0277 13 6 12.1100 6.0515 -0.0264 14 1 12.6173 5.0981 -0.0214 15 6 12.8403 7.2209 -0.0317 16 7 12.2225 8.3819 -0.0383 17 14 14.7072 7.1564 -0.0309 18 1 15.1780 6.4340 -1.2399 19 1 15.2503 8.5384 -0.0378 20 1 15.1773 6.4453 1.1850 21 6 4.3033 -0.1642 0.0009 22 6 3.5407 -1.2700 0.0058 23 7 2.1770 -1.1904 0.0054 24 1 1.6632 -2.0131 0.0094 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6274 2.1067 0.0005 29 1 6.1926 1.3635 -0.0055 30 1 8.3004 2.7873 0.8786 31 1 8.3015 2.7778 -0.9014 32 1 8.1704 5.2536 -0.9155 33 1 8.1693 5.2638 0.8644 34 1 10.3888 4.1589 0.8730 35 1 10.3905 4.1483 -0.9069 36 1 10.2595 6.6248 -0.9209 37 1 10.2577 6.6347 0.8590 38 1 12.7363 9.2047 -0.0424 39 1 5.3808 -0.2372 0.0019 40 1 4.0147 -2.2404 0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862513470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = 9.923895 kcal Electronic energy + Delta-G solvation = -19652.676308 eV Core-core repulsion = 16467.781050 eV Total energy + Delta-G solvation = -3184.895258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37434 -39.23985 -36.26957 -34.74809 -33.49167 -32.82301 -32.45538 -30.03326 -29.00881 -27.83892 -25.46281 -23.31777 -22.71419 -21.36591 -20.16331 -19.88272 -18.87636 -17.79873 -16.94978 -16.12801 -15.79551 -15.55955 -15.27890 -15.06998 -14.44346 -14.10831 -13.99263 -13.80879 -13.27511 -13.22255 -12.80644 -12.55111 -12.46897 -12.13245 -11.83111 -11.60866 -11.54125 -10.91290 -10.48742 -10.44291 -10.33284 -10.04700 -9.85342 -9.64069 -9.63079 -9.51763 -9.15246 -8.92864 -8.24462 -7.22654 -5.89247 -3.91741 1.10457 1.16773 2.59755 2.78819 2.86648 3.39292 3.43413 3.45502 3.45781 4.03853 4.26562 4.49979 4.53709 4.72257 4.91253 4.92712 5.01295 5.18107 5.26056 5.39216 5.44811 5.46557 5.48190 5.79904 5.90107 5.92957 6.11276 6.22456 6.38838 6.63046 6.67941 6.85881 6.92670 7.10443 7.27322 7.40413 7.80532 7.83022 7.97705 8.12773 8.54088 8.71828 9.15824 9.71371 11.22035 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.059793 B = 0.002125 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.171822 B =13174.108333 C =13605.926768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.134 3.866 3 C -0.172 4.172 4 C 0.163 3.837 5 N -0.277 5.277 6 N -0.584 5.584 7 C 0.523 3.477 8 O -0.509 6.509 9 C -0.132 4.132 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.258 4.258 22 C 0.135 3.865 23 N -0.624 5.624 24 H 0.410 0.590 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.378 0.622 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.135 0.865 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.603 -26.670 0.143 36.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.018 4.018 5 N -0.087 5.087 6 N -0.327 5.327 7 C 0.311 3.689 8 O -0.381 6.381 9 C -0.173 4.173 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.287 4.287 22 C 0.008 3.992 23 N -0.235 5.235 24 H 0.245 0.755 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.164 0.836 29 H 0.216 0.784 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.152 0.848 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.816 -24.523 0.131 34.889 hybrid contribution 1.463 -1.656 0.012 2.210 sum -23.353 -26.180 0.143 35.082 Atomic orbital electron populations 1.20938 0.88310 1.04379 1.03849 1.19907 0.94049 0.85338 0.97927 1.20968 0.90122 0.96969 1.11914 1.21882 0.93812 0.89051 0.97067 1.75917 0.89767 1.22314 1.20702 1.46830 1.02348 1.09103 1.74384 1.21000 0.89675 0.82688 0.75562 1.90733 1.72339 1.28681 1.46341 1.21790 0.89113 1.02363 1.04038 1.21466 0.96945 0.92522 1.03199 1.21647 0.91777 1.01253 1.00063 1.19099 0.95099 0.90194 0.97388 1.21251 0.91957 0.92202 1.50441 0.92818 1.25047 0.98423 0.95621 0.95531 1.69968 1.35390 0.97205 1.50872 0.86668 0.85958 0.76900 0.78493 1.20328 1.21340 1.20323 1.21959 0.99727 0.91893 1.15099 1.21339 0.82435 0.99802 0.95601 1.41159 1.05417 1.07900 1.69048 0.75535 0.89826 0.89148 0.90925 0.83621 0.78395 0.89047 0.89052 0.91630 0.91635 0.93458 0.93458 0.96535 0.96527 0.93015 0.84753 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.24 10.05 36.00 0.36 0.12 16 2 C 0.13 0.72 6.82 -81.85 -0.56 0.16 16 3 C -0.17 -1.57 9.86 -37.29 -0.37 -1.94 16 4 C 0.16 1.94 7.09 -80.51 -0.57 1.37 16 5 N -0.28 -4.42 11.16 34.56 0.39 -4.03 16 6 N -0.58 -8.60 6.17 31.19 0.19 -8.41 16 7 C 0.52 9.13 7.94 -11.10 -0.09 9.04 16 8 O -0.51 -11.33 16.32 5.43 0.09 -11.25 16 9 C -0.13 -1.98 5.70 -27.88 -0.16 -2.14 16 10 C -0.10 -2.00 4.50 -26.73 -0.12 -2.12 16 11 C -0.11 -2.37 5.15 -26.74 -0.14 -2.51 16 12 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 13 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -28.13 13.29 55.43 0.74 -27.39 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.26 -2.10 9.63 -37.29 -0.36 -2.46 16 22 C 0.13 0.61 11.15 -16.81 -0.19 0.43 16 23 N -0.62 -2.22 5.27 -9.24 -0.05 -2.27 16 24 H 0.41 0.03 8.73 -40.82 -0.36 -0.33 16 25 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 26 H 0.09 0.18 8.06 -51.93 -0.42 -0.24 16 27 H 0.07 0.02 8.13 -51.93 -0.42 -0.40 16 28 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.38 4.09 6.56 -182.60 -1.20 2.90 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.13 0.93 6.39 -52.49 -0.34 0.59 16 40 H 0.16 0.12 8.06 -52.49 -0.42 -0.30 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -40.19 343.73 -8.14 -48.33 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.92 Total: -3.70 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.74 Total: -13.81 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.27 Total: -42.10 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -40.19 -8.14 -48.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862513470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.257 kcal (2) G-P(sol) polarization free energy of solvation -40.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds