Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34320 * 119.37701 * 2 1 4 4 C 1.47269 * 118.57051 * 180.24759 * 3 2 1 5 5 N 1.31874 * 121.17670 * 179.75741 * 4 3 2 6 6 N 1.40095 * 119.99852 * 179.72272 * 5 4 3 7 7 C 1.34514 * 120.00103 * 179.97438 * 6 5 4 8 8 O 1.21431 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00231 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47331 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47542 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47257 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00042 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00267 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47032 * 59.99817 * 17 15 13 19 19 H 1.48495 * 109.47422 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47028 * 300.00485 * 17 15 13 21 21 C 1.47261 * 117.64565 * 359.48334 * 4 3 2 22 22 C 1.34330 * 118.56912 * 0.27640 * 21 4 3 23 23 N 1.36599 * 121.24827 * 359.97212 * 22 21 4 24 24 H 0.97000 * 118.64440 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47716 * 270.25939 * 1 2 3 26 26 H 1.09003 * 109.46873 * 30.25722 * 1 2 3 27 27 H 1.08999 * 109.47158 * 150.25452 * 1 2 3 28 28 H 1.07998 * 120.71649 * 0.02868 * 3 2 1 29 29 H 0.96999 * 120.00122 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.47238 * 300.00079 * 9 7 6 31 31 H 1.09002 * 109.47260 * 60.00118 * 9 7 6 32 32 H 1.08997 * 109.47244 * 300.00533 * 10 9 7 33 33 H 1.09002 * 109.46787 * 59.99908 * 10 9 7 34 34 H 1.08997 * 109.47365 * 300.00556 * 11 10 9 35 35 H 1.09004 * 109.46747 * 59.99765 * 11 10 9 36 36 H 1.09005 * 109.47124 * 300.00323 * 12 11 10 37 37 H 1.09004 * 109.47330 * 60.00120 * 12 11 10 38 38 H 0.97000 * 120.00297 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.71746 * 180.29049 * 21 4 3 40 40 H 1.08000 * 119.37516 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1659 1.1705 0.0000 4 6 3.6384 1.1498 -0.0056 5 7 4.3369 2.2683 -0.0106 6 7 5.7370 2.2198 -0.0100 7 6 6.4495 3.3607 -0.0157 8 8 5.8791 4.4328 -0.0218 9 6 7.9556 3.3086 -0.0144 10 6 8.5153 4.7326 -0.0223 11 6 10.0443 4.6797 -0.0204 12 6 10.6039 6.1036 -0.0277 13 6 12.1100 6.0515 -0.0264 14 1 12.6173 5.0981 -0.0214 15 6 12.8403 7.2209 -0.0317 16 7 12.2225 8.3819 -0.0383 17 14 14.7072 7.1564 -0.0309 18 1 15.1780 6.4340 -1.2399 19 1 15.2503 8.5384 -0.0378 20 1 15.1773 6.4453 1.1850 21 6 4.3033 -0.1642 0.0009 22 6 3.5407 -1.2700 0.0058 23 7 2.1770 -1.1904 0.0054 24 1 1.6632 -2.0131 0.0094 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6274 2.1067 0.0005 29 1 6.1926 1.3635 -0.0055 30 1 8.3004 2.7873 0.8786 31 1 8.3015 2.7778 -0.9014 32 1 8.1704 5.2536 -0.9155 33 1 8.1693 5.2638 0.8644 34 1 10.3888 4.1589 0.8730 35 1 10.3905 4.1483 -0.9069 36 1 10.2595 6.6248 -0.9209 37 1 10.2577 6.6347 0.8590 38 1 12.7363 9.2047 -0.0424 39 1 5.3808 -0.2372 0.0019 40 1 4.0147 -2.2404 0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862513470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = -19.763754 kcal Electronic energy + Delta-G solvation = -19653.963661 eV Core-core repulsion = 16467.781050 eV Total energy + Delta-G solvation = -3186.182611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99571 -40.44393 -37.26885 -36.53892 -34.61220 -33.93779 -33.69453 -31.57517 -30.00468 -28.43235 -27.24781 -24.37004 -23.86848 -22.42501 -21.68655 -21.30223 -19.38557 -18.67946 -18.38480 -17.94488 -16.92271 -16.58005 -16.50738 -15.86178 -15.68232 -15.39628 -15.32726 -14.52930 -14.38961 -13.98989 -13.80188 -13.58786 -13.51964 -13.30643 -13.12934 -12.98666 -12.76368 -12.68024 -12.36922 -12.17213 -12.14303 -11.38153 -11.35396 -11.16680 -10.92210 -10.71696 -10.57140 -10.53694 -10.33412 -8.17362 -8.03231 -6.30090 0.42725 0.59638 1.40383 1.45270 1.53078 1.73402 1.81347 2.18376 2.42876 2.69266 3.14793 3.57060 3.68882 3.88843 4.02421 4.08176 4.12321 4.36791 4.46632 4.61650 4.66431 4.67294 4.77961 4.78191 4.85020 4.87373 5.16668 5.17117 5.25904 5.31482 5.32879 5.36721 5.43793 5.56656 5.78110 5.88335 6.11840 6.25595 6.34425 6.50751 6.81904 6.88064 7.39251 7.71998 8.94856 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.059793 B = 0.002125 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.171822 B =13174.108333 C =13605.926768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.175 3.825 3 C -0.231 4.231 4 C 0.173 3.827 5 N -0.376 5.376 6 N -0.570 5.570 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.116 4.116 10 C -0.096 4.096 11 C -0.094 4.094 12 C 0.017 3.983 13 C -0.542 4.542 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.939 5.939 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.264 1.264 21 C -0.303 4.303 22 C 0.172 3.828 23 N -0.603 5.603 24 H 0.436 0.564 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.394 0.606 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.064 0.936 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.263 0.737 39 H 0.143 0.857 40 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 -32.134 0.172 40.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 C -0.259 4.259 4 C -0.003 4.003 5 N -0.189 5.189 6 N -0.311 5.311 7 C 0.306 3.694 8 O -0.456 6.456 9 C -0.157 4.157 10 C -0.134 4.134 11 C -0.131 4.131 12 C -0.020 4.020 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.332 4.332 22 C 0.043 3.957 23 N -0.213 5.213 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.150 0.850 29 H 0.234 0.766 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.160 0.840 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -25.202 -30.129 0.160 39.280 hybrid contribution 1.215 -0.290 0.006 1.249 sum -23.988 -30.419 0.166 38.740 Atomic orbital electron populations 1.21107 0.85312 1.05927 1.05237 1.20345 0.95746 0.84681 0.92686 1.21044 0.89382 0.98373 1.17106 1.22577 0.94958 0.90134 0.92618 1.76010 0.89677 1.24676 1.28554 1.46432 1.02850 1.08834 1.73010 1.21325 0.90564 0.82545 0.74967 1.90689 1.73613 1.31038 1.50304 1.21649 0.87489 0.99527 1.07027 1.21254 0.95661 0.95422 1.01061 1.21438 0.92712 0.97374 1.01583 1.19066 0.95150 0.93456 0.94305 1.21722 0.92882 0.93020 1.50375 0.91378 1.26146 1.04669 0.95054 0.94776 1.70141 1.37837 0.98128 1.51789 0.85387 0.78393 0.77186 0.79362 1.18851 1.21071 1.18835 1.22102 1.00795 0.91222 1.19113 1.22070 0.82308 1.00823 0.90477 1.41486 1.05773 1.08526 1.65554 0.72522 0.88275 0.89239 0.87833 0.84994 0.76582 0.85888 0.85893 0.93942 0.93952 0.91756 0.91750 0.99779 0.99771 0.92865 0.83970 0.77236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.04 10.05 71.23 0.72 0.68 16 2 C 0.17 1.37 6.82 40.92 0.28 1.65 16 3 C -0.23 -4.30 9.86 23.75 0.23 -4.06 16 4 C 0.17 4.28 7.09 43.89 0.31 4.59 16 5 N -0.38 -13.04 11.16 -44.56 -0.50 -13.54 16 6 N -0.57 -17.74 6.17 -173.70 -1.07 -18.81 16 7 C 0.52 19.21 7.94 87.70 0.70 19.91 16 8 O -0.58 -28.30 16.32 -3.50 -0.06 -28.35 16 9 C -0.12 -3.48 5.70 29.85 0.17 -3.31 16 10 C -0.10 -3.89 4.50 30.59 0.14 -3.76 16 11 C -0.09 -4.08 5.15 30.59 0.16 -3.92 16 12 C 0.02 1.00 4.97 29.85 0.15 1.15 16 13 C -0.54 -32.46 9.11 25.60 0.23 -32.23 16 14 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 15 C -0.01 -0.57 5.46 84.65 0.46 -0.11 16 16 N -0.94 -60.88 13.29 21.45 0.28 -60.60 16 17 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 C -0.30 -4.40 9.63 23.75 0.23 -4.17 16 22 C 0.17 0.74 11.15 83.06 0.93 1.66 16 23 N -0.60 -1.24 5.27 -183.13 -0.97 -2.21 16 24 H 0.44 -2.83 8.73 -92.71 -0.81 -3.64 16 25 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.09 0.16 8.06 -2.39 -0.02 0.14 16 27 H 0.10 -0.52 8.13 -2.39 -0.02 -0.54 16 28 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.39 8.64 6.56 -213.32 -1.40 7.24 16 30 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 33 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 35 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 36 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 37 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 38 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.14 1.74 6.39 -2.91 -0.02 1.72 16 40 H 0.21 -1.18 8.06 -2.91 -0.02 -1.20 16 Total: -1.00 -97.63 343.73 3.26 -94.37 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -1.16 Total: 3.05 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.70 Total: -21.93 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -2.25 Total: -95.15 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -97.63 3.26 -94.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862513470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -97.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds