Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39875 * 125.89227 * 2 1 4 4 C 1.35318 * 107.91639 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74754 * 0.02562 * 4 3 2 6 6 C 1.46504 * 126.03416 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46688 * 124.99861 * 6 5 4 8 8 H 1.08997 * 109.47157 * 54.99963 * 7 6 5 9 9 C 1.52996 * 109.47202 * 294.99330 * 7 6 5 10 10 C 1.50700 * 109.46760 * 174.99610 * 7 6 5 11 11 O 1.21296 * 120.00068 * 36.44591 * 10 7 6 12 12 N 1.34783 * 120.00071 * 216.44260 * 10 7 6 13 13 C 1.37098 * 119.99774 * 185.13943 * 12 10 7 14 14 H 1.08002 * 120.00028 * 329.12841 * 13 12 10 15 15 C 1.38945 * 119.99629 * 149.13044 * 13 12 10 16 16 N 1.31417 * 120.00302 * 349.19817 * 15 13 12 17 17 Si 1.86798 * 119.99968 * 169.20177 * 15 13 12 18 18 H 1.48507 * 109.47390 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47156 * 299.99641 * 17 15 13 20 20 H 1.48503 * 109.47452 * 59.99771 * 17 15 13 21 21 C 1.46499 * 119.99876 * 5.13880 * 12 10 7 22 22 C 1.53001 * 117.49803 * 132.23732 * 21 12 10 23 23 C 1.53000 * 117.49587 * 63.61349 * 21 12 10 24 24 N 1.30835 * 125.90426 * 180.29561 * 2 1 3 25 25 H 1.09006 * 109.46904 * 90.00711 * 1 2 3 26 26 H 1.09003 * 109.47091 * 209.99908 * 1 2 3 27 27 H 1.08997 * 109.47889 * 330.00076 * 1 2 3 28 28 H 1.07992 * 126.04408 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.12409 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47399 * 4.99747 * 6 5 4 31 31 H 1.08998 * 109.46962 * 244.99309 * 6 5 4 32 32 H 1.08995 * 109.47403 * 305.95433 * 9 7 6 33 33 H 1.09004 * 109.46732 * 65.94717 * 9 7 6 34 34 H 1.08999 * 109.47406 * 185.94483 * 9 7 6 35 35 H 0.97001 * 119.99779 * 175.19920 * 16 15 13 36 36 H 1.08997 * 115.54602 * 277.94836 * 21 12 10 37 37 H 1.08999 * 117.49931 * 359.97438 * 22 21 12 38 38 H 1.08992 * 117.49666 * 145.02195 * 22 21 12 39 39 H 1.08999 * 117.50036 * 214.97269 * 23 21 12 40 40 H 1.09001 * 117.50080 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1332 0.0000 4 6 3.6141 0.7155 0.0006 5 7 3.6088 -0.6339 0.0004 6 6 4.7901 -1.5005 0.0003 7 6 4.7117 -2.4694 1.1818 8 1 3.7706 -3.0176 1.1404 9 6 4.7868 -1.6830 2.4921 10 6 5.8621 -3.4404 1.1121 11 8 6.9476 -3.0675 0.7199 12 7 5.6847 -4.7233 1.4856 13 6 6.7540 -5.5804 1.5229 14 1 7.5770 -5.4473 0.8363 15 6 6.7789 -6.6204 2.4440 16 7 5.8925 -6.6610 3.4133 17 14 8.0724 -7.9609 2.3045 18 1 7.8840 -8.9465 3.3992 19 1 7.9362 -8.6457 0.9938 20 1 9.4249 -7.3566 2.4091 21 6 4.3493 -5.2016 1.8518 22 6 3.8758 -6.5178 1.2319 23 6 3.2727 -5.1915 0.7648 24 7 2.2742 -1.0597 -0.0055 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8899 0.5138 28 1 1.9922 2.1599 -0.0004 29 1 4.4890 1.3488 0.0003 30 1 5.6886 -0.8900 0.0899 31 1 4.8261 -2.0655 -0.9311 32 1 5.6766 -1.0535 2.4876 33 1 3.8997 -1.0575 2.5917 34 1 4.8375 -2.3778 3.3304 35 1 5.8656 -7.4220 4.0143 36 1 4.0357 -4.9841 2.8728 37 1 4.5576 -7.0276 0.5513 38 1 3.2506 -7.1666 1.8452 39 1 2.2506 -4.9680 1.0707 40 1 3.5578 -4.8286 -0.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864998863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = 70.314629 kcal Electronic energy + Delta-G solvation = -22058.373631 eV Core-core repulsion = 18876.097111 eV Total energy + Delta-G solvation = -3182.276519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03359 -39.04943 -36.32713 -34.74783 -33.03472 -32.05960 -31.03373 -29.77260 -28.59562 -25.75857 -25.16468 -22.59777 -21.42986 -21.30633 -20.87327 -19.58270 -18.31719 -17.00728 -16.76465 -15.66138 -15.37277 -15.14228 -14.47316 -14.12923 -14.08324 -13.77366 -13.41040 -13.33429 -13.03371 -12.70123 -12.54757 -12.12466 -12.00102 -11.97977 -11.70369 -11.17215 -11.10603 -10.95092 -10.76039 -10.71750 -10.51525 -10.38717 -10.28674 -9.74860 -9.37637 -9.04383 -8.87145 -8.43991 -8.29029 -7.65534 -6.29946 -3.95697 2.09677 2.70670 2.92546 3.18465 3.24430 3.27709 3.79741 4.10672 4.57118 4.68341 4.82879 4.91361 5.09878 5.10748 5.30384 5.34786 5.47317 5.61631 5.66513 5.75473 5.78208 5.85013 5.89404 5.94985 5.96152 6.00621 6.16115 6.23233 6.28003 6.31582 6.44479 6.59766 6.69721 6.85608 6.92703 7.14607 7.22884 7.55800 7.94561 8.14776 8.45836 9.15002 9.38255 9.93777 10.74866 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.004731 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.378854 B = 5917.173091 C = 6444.323104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.058 3.942 3 C -0.281 4.281 4 C 0.055 3.945 5 N -0.358 5.358 6 C 0.151 3.849 7 C -0.121 4.121 8 H 0.106 0.894 9 C -0.129 4.129 10 C 0.468 3.532 11 O -0.588 6.588 12 N -0.415 5.415 13 C -0.315 4.315 14 H 0.094 0.906 15 C 0.044 3.956 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.284 1.284 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.126 3.874 22 C -0.147 4.147 23 C -0.217 4.217 24 N -0.287 5.287 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.170 0.830 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.267 0.733 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 9.931 -3.713 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.311 4.311 4 C -0.092 4.092 5 N -0.139 5.139 6 C 0.030 3.970 7 C -0.143 4.143 8 H 0.124 0.876 9 C -0.187 4.187 10 C 0.256 3.744 11 O -0.473 6.473 12 N -0.132 5.132 13 C -0.442 4.442 14 H 0.112 0.888 15 C -0.161 4.161 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.198 1.198 21 C 0.021 3.979 22 C -0.185 4.185 23 C -0.255 4.255 24 N -0.111 5.111 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.187 0.813 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.607 8.609 -3.692 12.721 hybrid contribution 0.620 0.069 0.113 0.634 sum -7.987 8.677 -3.578 12.324 Atomic orbital electron populations 1.20112 0.87157 1.02967 1.02526 1.22310 0.96790 0.90983 1.00691 1.21286 0.91692 0.99472 1.18670 1.22554 0.99562 0.85266 1.01780 1.48793 1.05457 1.04596 1.55062 1.21668 0.82904 0.92618 0.99790 1.21553 1.01245 0.96334 0.95151 0.87602 1.21574 1.01149 0.99705 0.96293 1.19773 0.88467 0.82391 0.83801 1.90518 1.27604 1.77480 1.51666 1.43002 1.05711 1.06853 1.57676 1.19456 0.99295 1.08773 1.16717 0.88847 1.25283 0.97746 0.99498 0.93579 1.69902 1.35854 1.29896 1.14868 0.86135 0.81216 0.80363 0.77797 1.20947 1.19975 1.19808 1.21128 0.82760 0.99583 0.94420 1.22760 1.02040 0.90779 1.02895 1.23491 0.98268 1.03717 1.00016 1.77324 0.86637 1.22758 1.24355 0.90973 0.91075 0.90842 0.84083 0.81293 0.87818 0.89867 0.92570 0.92892 0.91760 0.92272 0.87670 0.89054 0.89689 0.89263 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 36.00 0.38 -0.30 16 2 C 0.06 0.80 7.22 -82.41 -0.59 0.20 16 3 C -0.28 -3.48 10.74 -40.01 -0.43 -3.91 16 4 C 0.06 0.71 11.45 -17.22 -0.20 0.52 16 5 N -0.36 -5.53 3.24 -61.36 -0.20 -5.73 16 6 C 0.15 2.52 5.50 -4.04 -0.02 2.49 16 7 C -0.12 -2.29 2.35 -91.77 -0.22 -2.50 16 8 H 0.11 2.03 5.02 -51.93 -0.26 1.77 16 9 C -0.13 -2.28 8.99 37.16 0.33 -1.95 16 10 C 0.47 11.17 6.51 -10.98 -0.07 11.10 16 11 O -0.59 -15.71 16.17 5.54 0.09 -15.62 16 12 N -0.41 -10.41 2.90 -107.73 -0.31 -10.72 16 13 C -0.31 -8.62 8.72 -14.93 -0.13 -8.75 16 14 H 0.09 2.68 7.52 -52.49 -0.39 2.29 16 15 C 0.04 1.15 4.83 -17.47 -0.08 1.06 16 16 N -0.87 -22.69 11.17 55.50 0.62 -22.07 16 17 Si 0.92 20.57 29.57 -169.99 -5.03 15.55 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.13 2.80 3.28 -67.93 -0.22 2.58 16 22 C -0.15 -3.02 8.99 -26.73 -0.24 -3.26 16 23 C -0.22 -4.06 8.34 -26.73 -0.22 -4.28 16 24 N -0.29 -4.69 12.35 33.67 0.42 -4.28 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.62 7.95 -51.93 -0.41 1.21 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.86 7.92 -51.93 -0.41 0.45 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 36 H 0.11 2.43 8.01 -51.93 -0.42 2.02 16 37 H 0.09 2.00 7.99 -51.93 -0.41 1.59 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -30.72 336.20 -7.16 -37.88 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.10 Total: 6.93 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.72 Total: -7.00 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.52 Total: -42.80 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.72 -7.16 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.196 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds