Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39875 * 125.89227 * 2 1 4 4 C 1.35318 * 107.91639 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74754 * 0.02562 * 4 3 2 6 6 C 1.46504 * 126.03416 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46688 * 124.99861 * 6 5 4 8 8 H 1.08997 * 109.47157 * 54.99963 * 7 6 5 9 9 C 1.52996 * 109.47202 * 294.99330 * 7 6 5 10 10 C 1.50700 * 109.46760 * 174.99610 * 7 6 5 11 11 O 1.21296 * 120.00068 * 36.44591 * 10 7 6 12 12 N 1.34783 * 120.00071 * 216.44260 * 10 7 6 13 13 C 1.37098 * 119.99774 * 185.13943 * 12 10 7 14 14 H 1.08002 * 120.00028 * 329.12841 * 13 12 10 15 15 C 1.38945 * 119.99629 * 149.13044 * 13 12 10 16 16 N 1.31417 * 120.00302 * 349.19817 * 15 13 12 17 17 Si 1.86798 * 119.99968 * 169.20177 * 15 13 12 18 18 H 1.48507 * 109.47390 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47156 * 299.99641 * 17 15 13 20 20 H 1.48503 * 109.47452 * 59.99771 * 17 15 13 21 21 C 1.46499 * 119.99876 * 5.13880 * 12 10 7 22 22 C 1.53001 * 117.49803 * 132.23732 * 21 12 10 23 23 C 1.53000 * 117.49587 * 63.61349 * 21 12 10 24 24 N 1.30835 * 125.90426 * 180.29561 * 2 1 3 25 25 H 1.09006 * 109.46904 * 90.00711 * 1 2 3 26 26 H 1.09003 * 109.47091 * 209.99908 * 1 2 3 27 27 H 1.08997 * 109.47889 * 330.00076 * 1 2 3 28 28 H 1.07992 * 126.04408 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.12409 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47399 * 4.99747 * 6 5 4 31 31 H 1.08998 * 109.46962 * 244.99309 * 6 5 4 32 32 H 1.08995 * 109.47403 * 305.95433 * 9 7 6 33 33 H 1.09004 * 109.46732 * 65.94717 * 9 7 6 34 34 H 1.08999 * 109.47406 * 185.94483 * 9 7 6 35 35 H 0.97001 * 119.99779 * 175.19920 * 16 15 13 36 36 H 1.08997 * 115.54602 * 277.94836 * 21 12 10 37 37 H 1.08999 * 117.49931 * 359.97438 * 22 21 12 38 38 H 1.08992 * 117.49666 * 145.02195 * 22 21 12 39 39 H 1.08999 * 117.50036 * 214.97269 * 23 21 12 40 40 H 1.09001 * 117.50080 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1332 0.0000 4 6 3.6141 0.7155 0.0006 5 7 3.6088 -0.6339 0.0004 6 6 4.7901 -1.5005 0.0003 7 6 4.7117 -2.4694 1.1818 8 1 3.7706 -3.0176 1.1404 9 6 4.7868 -1.6830 2.4921 10 6 5.8621 -3.4404 1.1121 11 8 6.9476 -3.0675 0.7199 12 7 5.6847 -4.7233 1.4856 13 6 6.7540 -5.5804 1.5229 14 1 7.5770 -5.4473 0.8363 15 6 6.7789 -6.6204 2.4440 16 7 5.8925 -6.6610 3.4133 17 14 8.0724 -7.9609 2.3045 18 1 7.8840 -8.9465 3.3992 19 1 7.9362 -8.6457 0.9938 20 1 9.4249 -7.3566 2.4091 21 6 4.3493 -5.2016 1.8518 22 6 3.8758 -6.5178 1.2319 23 6 3.2727 -5.1915 0.7648 24 7 2.2742 -1.0597 -0.0055 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8899 0.5138 28 1 1.9922 2.1599 -0.0004 29 1 4.4890 1.3488 0.0003 30 1 5.6886 -0.8900 0.0899 31 1 4.8261 -2.0655 -0.9311 32 1 5.6766 -1.0535 2.4876 33 1 3.8997 -1.0575 2.5917 34 1 4.8375 -2.3778 3.3304 35 1 5.8656 -7.4220 4.0143 36 1 4.0357 -4.9841 2.8728 37 1 4.5576 -7.0276 0.5513 38 1 3.2506 -7.1666 1.8452 39 1 2.2506 -4.9680 1.0707 40 1 3.5578 -4.8286 -0.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864998863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = 52.879320 kcal Electronic energy + Delta-G solvation = -22059.129683 eV Core-core repulsion = 18876.097111 eV Total energy + Delta-G solvation = -3183.032571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09666 -40.83376 -38.09112 -36.19566 -34.89090 -33.36348 -32.86180 -30.82033 -29.65259 -27.48376 -26.61479 -24.20028 -23.12040 -22.90258 -21.94123 -20.76491 -19.92869 -18.81720 -18.22745 -17.25031 -16.95514 -16.68683 -16.18511 -15.76537 -15.38923 -15.04007 -14.83032 -14.76282 -14.28807 -13.87182 -13.76992 -13.55902 -13.43478 -13.28858 -12.92601 -12.89997 -12.80700 -12.57756 -12.32937 -12.30473 -12.21826 -12.15375 -11.53961 -11.35495 -11.08716 -10.74153 -10.24845 -10.11616 -9.62718 -9.39032 -8.28912 -6.02986 1.06372 1.37629 1.40083 1.48577 1.58342 1.95362 1.97820 2.27204 2.88746 2.99387 3.19479 3.51731 3.75974 3.89564 4.03795 4.05826 4.13338 4.26379 4.30666 4.38900 4.52469 4.54021 4.60427 4.74465 4.78093 4.86207 4.91378 4.96018 5.00981 5.04962 5.11237 5.15498 5.31096 5.34709 5.39322 5.46373 5.89749 6.12689 6.18568 6.49857 6.91877 7.15848 7.44419 8.00388 8.73809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.004731 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.378854 B = 5917.173091 C = 6444.323104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.054 3.946 3 C -0.281 4.281 4 C 0.052 3.948 5 N -0.374 5.374 6 C 0.163 3.837 7 C -0.105 4.105 8 H 0.104 0.896 9 C -0.118 4.118 10 C 0.458 3.542 11 O -0.626 6.626 12 N -0.427 5.427 13 C -0.349 4.349 14 H 0.067 0.933 15 C 0.016 3.984 16 N -0.880 5.880 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.279 1.279 21 C 0.105 3.895 22 C -0.147 4.147 23 C -0.180 4.180 24 N -0.332 5.332 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.199 0.801 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.272 0.728 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 10.944 -3.684 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C -0.310 4.310 4 C -0.094 4.094 5 N -0.155 5.155 6 C 0.041 3.959 7 C -0.127 4.127 8 H 0.122 0.878 9 C -0.176 4.176 10 C 0.248 3.752 11 O -0.513 6.513 12 N -0.144 5.144 13 C -0.477 4.477 14 H 0.085 0.915 15 C -0.188 4.188 16 N -0.516 5.516 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.194 1.194 20 H -0.204 1.204 21 C 0.000 4.000 22 C -0.184 4.184 23 C -0.218 4.218 24 N -0.156 5.156 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.216 0.784 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.270 9.628 -3.656 14.544 hybrid contribution 1.079 -0.168 0.109 1.097 sum -9.191 9.459 -3.547 13.658 Atomic orbital electron populations 1.20256 0.84800 1.03978 1.03627 1.23012 0.98388 0.90893 0.98962 1.21692 0.91221 1.00522 1.17610 1.23177 1.01160 0.84408 1.00638 1.48634 1.04830 1.05273 1.56752 1.21368 0.84110 0.92506 0.97948 1.21384 0.98588 0.95791 0.96983 0.87770 1.21479 1.02108 0.99260 0.94776 1.20616 0.89396 0.82765 0.82466 1.90473 1.29526 1.78184 1.53146 1.43195 1.06389 1.07230 1.57607 1.19400 1.00075 1.10678 1.17533 0.91542 1.25905 0.99384 1.00622 0.92869 1.69969 1.36530 1.30336 1.14779 0.85278 0.78482 0.78006 0.78295 1.19539 1.19354 1.20429 1.21082 0.82441 1.01497 0.94938 1.22744 1.02022 0.91001 1.02661 1.23450 0.98466 1.01397 0.98449 1.77286 0.87191 1.24515 1.26567 0.89733 0.91460 0.88440 0.81192 0.78388 0.87057 0.91076 0.92238 0.91128 0.93460 0.91831 0.88877 0.90908 0.88115 0.86304 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.45 71.24 0.74 -0.41 16 2 C 0.05 1.34 7.22 43.10 0.31 1.65 16 3 C -0.28 -6.08 10.74 21.99 0.24 -5.84 16 4 C 0.05 1.20 11.45 83.54 0.96 2.16 16 5 N -0.37 -11.04 3.24 -348.05 -1.13 -12.17 16 6 C 0.16 5.38 5.50 86.38 0.47 5.85 16 7 C -0.11 -4.01 2.35 -11.54 -0.03 -4.04 16 8 H 0.10 3.98 5.02 -2.39 -0.01 3.97 16 9 C -0.12 -4.13 8.99 71.98 0.65 -3.48 16 10 C 0.46 22.54 6.51 87.66 0.57 23.11 16 11 O -0.63 -34.74 16.17 -3.08 -0.05 -34.79 16 12 N -0.43 -22.09 2.90 -613.12 -1.78 -23.86 16 13 C -0.35 -19.78 8.72 84.04 0.73 -19.05 16 14 H 0.07 4.03 7.52 -2.91 -0.02 4.01 16 15 C 0.02 0.86 4.83 84.92 0.41 1.27 16 16 N -0.88 -46.14 11.17 21.66 0.24 -45.90 16 17 Si 0.98 42.47 29.57 68.60 2.03 44.50 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.11 4.70 3.28 44.99 0.15 4.85 16 22 C -0.15 -5.97 8.99 30.60 0.28 -5.69 16 23 C -0.18 -6.56 8.34 30.60 0.26 -6.31 16 24 N -0.33 -10.38 12.35 -47.38 -0.59 -10.97 16 25 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.11 3.45 7.95 -2.39 -0.02 3.43 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.21 7.92 -2.38 -0.02 2.19 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 36 H 0.09 4.36 8.01 -2.39 -0.02 4.35 16 37 H 0.07 3.23 7.99 -2.39 -0.02 3.21 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -67.71 336.20 5.48 -62.22 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 1.02 Total: 26.90 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.73 Total: -5.93 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -3.25 Total: -92.90 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.05 Total: -34.79 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.71 5.48 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.103 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds