Wall clock time and date at job start Mon Mar 30 2020 02:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39867 * 125.90472 * 2 1 4 4 C 1.35313 * 107.92285 * 179.86275 * 3 2 1 5 5 N 1.34942 * 107.74988 * 0.39627 * 4 3 2 6 6 C 1.46499 * 126.04272 * 179.74681 * 5 4 3 7 7 C 1.53003 * 109.47033 * 125.02602 * 6 5 4 8 8 H 1.09007 * 109.46946 * 304.99938 * 7 6 5 9 9 C 1.52999 * 109.47325 * 65.00034 * 7 6 5 10 10 C 1.50700 * 109.46842 * 185.00487 * 7 6 5 11 11 O 1.21291 * 120.00113 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99536 * 180.02562 * 10 7 6 13 13 C 1.37102 * 119.99674 * 179.97438 * 12 10 7 14 14 H 1.08000 * 119.99946 * 222.93385 * 13 12 10 15 15 C 1.38948 * 119.99928 * 42.93308 * 13 12 10 16 16 N 1.31413 * 120.00111 * 18.93494 * 15 13 12 17 17 Si 1.86799 * 120.00079 * 198.93373 * 15 13 12 18 18 H 1.48497 * 109.47119 * 89.99949 * 17 15 13 19 19 H 1.48499 * 109.47143 * 210.00141 * 17 15 13 20 20 H 1.48504 * 109.47154 * 330.00122 * 17 15 13 21 21 C 1.46495 * 120.00371 * 359.97438 * 12 10 7 22 22 C 1.52993 * 117.50016 * 187.60198 * 21 12 10 23 23 C 1.52998 * 60.00297 * 252.50714 * 22 21 12 24 24 N 1.30849 * 125.89672 * 180.31095 * 2 1 3 25 25 H 1.09007 * 109.47001 * 269.71474 * 1 2 3 26 26 H 1.08996 * 109.46976 * 29.71005 * 1 2 3 27 27 H 1.08998 * 109.47370 * 149.71435 * 1 2 3 28 28 H 1.08000 * 126.03831 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.12313 * 180.14658 * 4 3 2 30 30 H 1.08994 * 109.47451 * 245.02773 * 6 5 4 31 31 H 1.09003 * 109.46839 * 5.02876 * 6 5 4 32 32 H 1.09001 * 109.46902 * 59.99710 * 9 7 6 33 33 H 1.08995 * 109.47137 * 180.02562 * 9 7 6 34 34 H 1.09003 * 109.47154 * 300.00415 * 9 7 6 35 35 H 0.97006 * 120.00354 * 174.93589 * 16 15 13 36 36 H 1.09006 * 115.54738 * 333.31069 * 21 12 10 37 37 H 1.08995 * 117.49807 * 0.02562 * 22 21 12 38 38 H 1.09001 * 117.50038 * 145.02221 * 22 21 12 39 39 H 1.08999 * 117.50507 * 252.51503 * 23 22 21 40 40 H 1.09003 * 117.51659 * 107.47028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6088 -0.6342 -0.0039 6 6 4.7899 -1.5009 -0.0088 7 6 4.7116 -2.4763 1.1674 8 1 4.5863 -1.9175 2.0950 9 6 3.5196 -3.4154 0.9728 10 6 5.9819 -3.2842 1.2354 11 8 6.8629 -3.0986 0.4227 12 7 6.1385 -4.2138 2.1987 13 6 7.2940 -4.9492 2.2602 14 1 7.2485 -6.0115 2.4500 15 6 8.5234 -4.3279 2.0783 16 7 8.6286 -3.0255 2.2182 17 14 10.0269 -5.3440 1.6349 18 1 10.1386 -5.4441 0.1575 19 1 11.2440 -4.6911 2.1803 20 1 9.8932 -6.7047 2.2145 21 6 5.0742 -4.4385 3.1799 22 6 5.3788 -5.3752 4.3505 23 6 4.4418 -5.8308 3.2301 24 7 2.2742 -1.0600 -0.0058 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 0.8925 -0.5093 27 1 -0.3634 -0.8874 -0.5182 28 1 1.9925 2.1597 -0.0004 29 1 4.4892 1.3484 0.0061 30 1 4.8259 -2.0608 -0.9433 31 1 5.6885 -0.8910 0.0841 32 1 3.6448 -3.9741 0.0453 33 1 3.4636 -4.1099 1.8110 34 1 2.6008 -2.8310 0.9236 35 1 9.4989 -2.6005 2.1640 36 1 4.4259 -3.5840 3.3741 37 1 6.3712 -5.8241 4.3909 38 1 4.9309 -5.1372 5.3154 39 1 3.3776 -5.8923 3.4576 40 1 4.8176 -6.5795 2.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864998865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:02 Heat of formation + Delta-G solvation = 84.864671 kcal Electronic energy + Delta-G solvation = -22081.017130 eV Core-core repulsion = 18899.371548 eV Total energy + Delta-G solvation = -3181.645582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99903 -38.93574 -36.29929 -34.67565 -32.82202 -32.15413 -30.78954 -29.60650 -28.63846 -25.30565 -25.16920 -22.52478 -21.71283 -21.05071 -20.66246 -19.65743 -18.91186 -17.07968 -16.12315 -15.93079 -15.03191 -14.78948 -14.56443 -14.10580 -13.93792 -13.65667 -13.43273 -13.11514 -12.88876 -12.60599 -12.58425 -12.24022 -11.98328 -11.83387 -11.38677 -11.06571 -10.96992 -10.90418 -10.81558 -10.71371 -10.43099 -10.19337 -10.11176 -9.83625 -9.68225 -8.99873 -8.73771 -8.34252 -7.99328 -7.05657 -6.15028 -3.89141 2.13539 2.76994 2.95227 3.28667 3.35549 3.38624 4.06963 4.23895 4.64474 4.76044 4.89246 4.96744 5.20629 5.26420 5.33155 5.39296 5.56067 5.58796 5.62196 5.71736 5.75358 5.81969 5.86711 5.96610 6.05368 6.08888 6.11426 6.22845 6.30611 6.44203 6.50053 6.52828 6.72577 6.78761 6.93389 7.03343 7.30056 7.58930 7.98309 8.22820 9.02070 9.10252 9.62598 10.23692 10.94243 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.005129 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.734525 B = 5457.627630 C = 6311.365860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.055 3.945 3 C -0.283 4.283 4 C 0.057 3.943 5 N -0.358 5.358 6 C 0.154 3.846 7 C -0.113 4.113 8 H 0.079 0.921 9 C -0.158 4.158 10 C 0.491 3.509 11 O -0.537 6.537 12 N -0.422 5.422 13 C -0.349 4.349 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.833 5.833 17 Si 0.913 3.087 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.077 3.923 22 C -0.177 4.177 23 C -0.206 4.206 24 N -0.288 5.288 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.171 0.829 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 5.184 -0.559 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.312 4.312 4 C -0.090 4.090 5 N -0.139 5.139 6 C 0.033 3.967 7 C -0.135 4.135 8 H 0.097 0.903 9 C -0.215 4.215 10 C 0.278 3.722 11 O -0.415 6.415 12 N -0.142 5.142 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.467 5.467 17 Si 0.740 3.260 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.029 4.029 22 C -0.215 4.215 23 C -0.245 4.245 24 N -0.112 5.112 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.188 0.812 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.443 4.095 -1.074 12.201 hybrid contribution 0.942 0.580 0.032 1.107 sum -10.501 4.676 -1.042 11.542 Atomic orbital electron populations 1.20105 0.87212 1.02815 1.02566 1.22350 0.96770 0.91127 1.00780 1.21275 0.91684 0.99459 1.18803 1.22592 0.99617 0.85315 1.01501 1.48887 1.05479 1.04684 1.54867 1.21644 0.82399 0.92417 1.00208 1.21390 0.97188 0.96968 0.97970 0.90252 1.22201 0.97665 0.99340 1.02306 1.19451 0.86798 0.83481 0.82519 1.90531 1.42950 1.67278 1.40789 1.42683 1.13688 1.35350 1.22430 1.18883 0.82547 0.91410 1.54740 0.90383 1.25206 0.98630 0.95115 0.94688 1.69830 1.24545 1.09651 1.42662 0.86203 0.80967 0.79606 0.79196 1.20321 1.21304 1.19888 1.21713 0.94448 0.92165 0.94551 1.23127 1.01312 1.04627 0.92453 1.23316 0.97457 1.00551 1.03159 1.77203 0.86841 1.22414 1.24715 0.90917 0.90896 0.91213 0.84101 0.81221 0.89350 0.87768 0.93147 0.91327 0.89903 0.92611 0.87819 0.87480 0.89871 0.89752 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 36.00 0.38 -0.30 16 2 C 0.06 0.77 7.22 -82.40 -0.59 0.18 16 3 C -0.28 -3.69 10.74 -40.01 -0.43 -4.12 16 4 C 0.06 0.80 11.45 -17.23 -0.20 0.60 16 5 N -0.36 -5.88 3.68 -61.37 -0.23 -6.11 16 6 C 0.15 2.78 5.31 -4.04 -0.02 2.76 16 7 C -0.11 -2.21 2.14 -91.77 -0.20 -2.41 16 8 H 0.08 1.57 7.57 -51.93 -0.39 1.17 16 9 C -0.16 -2.81 8.54 37.16 0.32 -2.49 16 10 C 0.49 12.17 6.37 -10.98 -0.07 12.10 16 11 O -0.54 -15.27 13.58 5.55 0.08 -15.19 16 12 N -0.42 -10.43 2.85 -107.73 -0.31 -10.73 16 13 C -0.35 -9.43 7.83 -14.93 -0.12 -9.55 16 14 H 0.08 2.05 7.40 -52.49 -0.39 1.67 16 15 C 0.07 2.06 4.36 -17.47 -0.08 1.98 16 16 N -0.83 -24.28 11.67 55.50 0.65 -23.63 16 17 Si 0.91 21.77 29.60 -169.99 -5.03 16.74 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.08 1.56 4.31 -67.94 -0.29 1.27 16 22 C -0.18 -3.23 9.80 -26.74 -0.26 -3.49 16 23 C -0.21 -3.56 9.39 -26.73 -0.25 -3.81 16 24 N -0.29 -4.75 9.62 33.67 0.32 -4.42 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.10 1.90 7.88 -51.93 -0.41 1.49 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.18 4.37 -51.93 -0.23 0.96 16 34 H 0.08 1.43 5.36 -51.93 -0.28 1.15 16 35 H 0.26 7.37 8.32 -40.82 -0.34 7.03 16 36 H 0.10 1.94 6.24 -51.93 -0.32 1.61 16 37 H 0.11 2.16 6.82 -51.93 -0.35 1.80 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -32.48 325.42 -7.17 -39.65 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.74 Total: 6.10 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.81 Total: -7.30 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.44 Total: -44.90 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.48 -7.17 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.510 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds