Wall clock time and date at job start Mon Mar 30 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39867 * 125.90472 * 2 1 4 4 C 1.35313 * 107.92285 * 179.86275 * 3 2 1 5 5 N 1.34942 * 107.74988 * 0.39627 * 4 3 2 6 6 C 1.46499 * 126.04272 * 179.74681 * 5 4 3 7 7 C 1.53003 * 109.47033 * 125.02602 * 6 5 4 8 8 H 1.09007 * 109.46946 * 304.99938 * 7 6 5 9 9 C 1.52999 * 109.47325 * 65.00034 * 7 6 5 10 10 C 1.50700 * 109.46842 * 185.00487 * 7 6 5 11 11 O 1.21291 * 120.00113 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99536 * 180.02562 * 10 7 6 13 13 C 1.37102 * 119.99674 * 179.97438 * 12 10 7 14 14 H 1.08000 * 119.99946 * 222.93385 * 13 12 10 15 15 C 1.38948 * 119.99928 * 42.93308 * 13 12 10 16 16 N 1.31413 * 120.00111 * 18.93494 * 15 13 12 17 17 Si 1.86799 * 120.00079 * 198.93373 * 15 13 12 18 18 H 1.48497 * 109.47119 * 89.99949 * 17 15 13 19 19 H 1.48499 * 109.47143 * 210.00141 * 17 15 13 20 20 H 1.48504 * 109.47154 * 330.00122 * 17 15 13 21 21 C 1.46495 * 120.00371 * 359.97438 * 12 10 7 22 22 C 1.52993 * 117.50016 * 187.60198 * 21 12 10 23 23 C 1.52998 * 60.00297 * 252.50714 * 22 21 12 24 24 N 1.30849 * 125.89672 * 180.31095 * 2 1 3 25 25 H 1.09007 * 109.47001 * 269.71474 * 1 2 3 26 26 H 1.08996 * 109.46976 * 29.71005 * 1 2 3 27 27 H 1.08998 * 109.47370 * 149.71435 * 1 2 3 28 28 H 1.08000 * 126.03831 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.12313 * 180.14658 * 4 3 2 30 30 H 1.08994 * 109.47451 * 245.02773 * 6 5 4 31 31 H 1.09003 * 109.46839 * 5.02876 * 6 5 4 32 32 H 1.09001 * 109.46902 * 59.99710 * 9 7 6 33 33 H 1.08995 * 109.47137 * 180.02562 * 9 7 6 34 34 H 1.09003 * 109.47154 * 300.00415 * 9 7 6 35 35 H 0.97006 * 120.00354 * 174.93589 * 16 15 13 36 36 H 1.09006 * 115.54738 * 333.31069 * 21 12 10 37 37 H 1.08995 * 117.49807 * 0.02562 * 22 21 12 38 38 H 1.09001 * 117.50038 * 145.02221 * 22 21 12 39 39 H 1.08999 * 117.50507 * 252.51503 * 23 22 21 40 40 H 1.09003 * 117.51659 * 107.47028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6088 -0.6342 -0.0039 6 6 4.7899 -1.5009 -0.0088 7 6 4.7116 -2.4763 1.1674 8 1 4.5863 -1.9175 2.0950 9 6 3.5196 -3.4154 0.9728 10 6 5.9819 -3.2842 1.2354 11 8 6.8629 -3.0986 0.4227 12 7 6.1385 -4.2138 2.1987 13 6 7.2940 -4.9492 2.2602 14 1 7.2485 -6.0115 2.4500 15 6 8.5234 -4.3279 2.0783 16 7 8.6286 -3.0255 2.2182 17 14 10.0269 -5.3440 1.6349 18 1 10.1386 -5.4441 0.1575 19 1 11.2440 -4.6911 2.1803 20 1 9.8932 -6.7047 2.2145 21 6 5.0742 -4.4385 3.1799 22 6 5.3788 -5.3752 4.3505 23 6 4.4418 -5.8308 3.2301 24 7 2.2742 -1.0600 -0.0058 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 0.8925 -0.5093 27 1 -0.3634 -0.8874 -0.5182 28 1 1.9925 2.1597 -0.0004 29 1 4.4892 1.3484 0.0061 30 1 4.8259 -2.0608 -0.9433 31 1 5.6885 -0.8910 0.0841 32 1 3.6448 -3.9741 0.0453 33 1 3.4636 -4.1099 1.8110 34 1 2.6008 -2.8310 0.9236 35 1 9.4989 -2.6005 2.1640 36 1 4.4259 -3.5840 3.3741 37 1 6.3712 -5.8241 4.3909 38 1 4.9309 -5.1372 5.3154 39 1 3.3776 -5.8923 3.4576 40 1 4.8176 -6.5795 2.5326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864998865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:01 Heat of formation + Delta-G solvation = 65.495758 kcal Electronic energy + Delta-G solvation = -22081.857029 eV Core-core repulsion = 18899.371548 eV Total energy + Delta-G solvation = -3182.485481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.13340 -40.70402 -37.96119 -36.20086 -34.69495 -33.50940 -32.58992 -30.74450 -29.76258 -27.13254 -26.58661 -24.12074 -23.14990 -22.59688 -21.91627 -21.00825 -20.42317 -18.64501 -17.94770 -17.42111 -16.64629 -16.35929 -16.20295 -15.63159 -15.34529 -14.99902 -14.81795 -14.46520 -14.32425 -13.95047 -13.81661 -13.63367 -13.22054 -13.10440 -12.88193 -12.81230 -12.76811 -12.63613 -12.29867 -12.27542 -12.11661 -12.01633 -11.56981 -11.24003 -11.17271 -10.74703 -10.17566 -9.89368 -9.42974 -8.99437 -8.22533 -5.99577 1.01941 1.35110 1.43574 1.47972 1.54982 1.93918 2.21077 2.36645 3.02485 3.09837 3.33977 3.57383 3.78070 3.90719 4.02122 4.06652 4.10842 4.24216 4.31354 4.38897 4.46477 4.58375 4.65633 4.82767 4.86961 4.91305 4.98634 5.00397 5.02272 5.07887 5.14304 5.24658 5.30868 5.40108 5.45674 5.47776 5.93880 6.13502 6.17876 6.88319 7.00329 7.14344 7.66441 8.30155 8.86367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.005129 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.734525 B = 5457.627630 C = 6311.365860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.053 3.947 3 C -0.279 4.279 4 C 0.046 3.954 5 N -0.377 5.377 6 C 0.168 3.832 7 C -0.096 4.096 8 H 0.080 0.920 9 C -0.143 4.143 10 C 0.477 3.523 11 O -0.585 6.585 12 N -0.436 5.436 13 C -0.358 4.358 14 H 0.079 0.921 15 C 0.024 3.976 16 N -0.869 5.869 17 Si 0.969 3.031 18 H -0.291 1.291 19 H -0.280 1.280 20 H -0.255 1.255 21 C 0.047 3.953 22 C -0.172 4.172 23 C -0.179 4.179 24 N -0.324 5.324 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.172 0.828 29 H 0.193 0.807 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 5.460 0.259 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C -0.308 4.308 4 C -0.100 4.100 5 N -0.158 5.158 6 C 0.046 3.954 7 C -0.119 4.119 8 H 0.098 0.902 9 C -0.200 4.200 10 C 0.265 3.735 11 O -0.467 6.467 12 N -0.155 5.155 13 C -0.485 4.485 14 H 0.096 0.904 15 C -0.182 4.182 16 N -0.504 5.504 17 Si 0.795 3.205 18 H -0.218 1.218 19 H -0.206 1.206 20 H -0.179 1.179 21 C -0.058 4.058 22 C -0.210 4.210 23 C -0.218 4.218 24 N -0.148 5.148 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.189 0.811 29 H 0.210 0.790 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.736 4.352 -0.218 14.410 hybrid contribution 1.516 0.520 -0.215 1.617 sum -12.220 4.871 -0.433 13.162 Atomic orbital electron populations 1.20267 0.84406 1.04078 1.03785 1.23104 0.98544 0.90808 0.98811 1.21688 0.91010 1.00696 1.17419 1.23158 1.01240 0.84588 1.00987 1.48712 1.05049 1.05243 1.56788 1.21246 0.83215 0.92192 0.98769 1.21202 0.95162 0.96861 0.98645 0.90221 1.22093 0.97061 0.98968 1.01916 1.20290 0.87825 0.83573 0.81793 1.90485 1.44935 1.68776 1.42513 1.42896 1.14152 1.35037 1.23433 1.19124 0.83664 0.91785 1.53967 0.90364 1.25998 1.01422 0.96037 0.94752 1.69933 1.24753 1.11153 1.44597 0.85324 0.78116 0.79232 0.77867 1.21784 1.20577 1.17897 1.21973 0.94403 0.94264 0.95172 1.23177 1.00770 1.03279 0.93746 1.23328 0.99305 0.97473 1.01645 1.77132 0.86938 1.24030 1.26657 0.89566 0.88442 0.91198 0.81089 0.79048 0.90791 0.88691 0.94333 0.90559 0.88802 0.93065 0.86262 0.89904 0.86563 0.85895 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.45 71.24 0.74 -0.37 16 2 C 0.05 1.36 7.22 43.10 0.31 1.67 16 3 C -0.28 -6.56 10.74 21.99 0.24 -6.32 16 4 C 0.05 1.22 11.45 83.54 0.96 2.18 16 5 N -0.38 -12.23 3.68 -348.06 -1.28 -13.51 16 6 C 0.17 6.23 5.31 86.38 0.46 6.69 16 7 C -0.10 -3.83 2.14 -11.54 -0.02 -3.86 16 8 H 0.08 3.15 7.57 -2.38 -0.02 3.13 16 9 C -0.14 -5.02 8.54 71.98 0.61 -4.40 16 10 C 0.48 24.32 6.37 87.66 0.56 24.87 16 11 O -0.59 -34.73 13.58 -3.06 -0.04 -34.77 16 12 N -0.44 -21.85 2.85 -613.13 -1.75 -23.59 16 13 C -0.36 -19.69 7.83 84.04 0.66 -19.04 16 14 H 0.08 4.18 7.40 -2.91 -0.02 4.16 16 15 C 0.02 1.38 4.36 84.93 0.37 1.75 16 16 N -0.87 -52.27 11.67 21.66 0.25 -52.02 16 17 Si 0.97 45.61 29.60 68.60 2.03 47.64 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 C 0.05 1.83 4.31 44.99 0.19 2.03 16 22 C -0.17 -5.95 9.80 30.59 0.30 -5.65 16 23 C -0.18 -5.76 9.39 30.59 0.29 -5.47 16 24 N -0.32 -10.31 9.62 -47.38 -0.46 -10.77 16 25 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.19 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 3.64 7.88 -2.39 -0.02 3.62 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.51 4.37 -2.39 -0.01 2.50 16 34 H 0.09 3.13 5.36 -2.39 -0.01 3.11 16 35 H 0.26 15.06 8.32 -92.70 -0.77 14.28 16 36 H 0.12 4.25 6.24 -2.38 -0.01 4.24 16 37 H 0.08 3.29 6.82 -2.39 -0.02 3.28 16 38 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -72.47 325.42 5.45 -67.01 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 1.03 Total: 25.92 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 5.66 Total: -5.91 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -3.23 Total: -99.89 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.04 Total: -34.77 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.47 5.45 -67.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.507 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds