Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39862 * 125.89886 * 2 1 4 4 C 1.35312 * 107.92007 * 179.97438 * 3 2 1 5 5 N 1.34950 * 107.74535 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03660 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46932 * 125.00103 * 6 5 4 8 8 H 1.08997 * 109.47088 * 55.00143 * 7 6 5 9 9 C 1.53005 * 109.47106 * 295.00102 * 7 6 5 10 10 C 1.50697 * 109.46974 * 175.00479 * 7 6 5 11 11 O 1.21277 * 120.00687 * 33.88095 * 10 7 6 12 12 N 1.34785 * 119.99748 * 213.88633 * 10 7 6 13 13 C 1.47579 * 134.49063 * 354.99815 * 12 10 7 14 14 C 1.53939 * 86.11535 * 155.36160 * 13 12 10 15 15 C 1.50699 * 113.74282 * 137.95183 * 14 13 12 16 16 H 1.08001 * 120.00090 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00087 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00043 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47078 * 60.00208 * 19 17 15 21 21 H 1.48501 * 109.46894 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47189 * 300.00246 * 19 17 15 23 23 C 1.47573 * 134.49115 * 174.99907 * 12 10 7 24 24 N 1.30838 * 125.89418 * 180.29725 * 2 1 3 25 25 H 1.09003 * 109.47132 * 90.00434 * 1 2 3 26 26 H 1.08998 * 109.47330 * 210.00108 * 1 2 3 27 27 H 1.08998 * 109.47341 * 330.00175 * 1 2 3 28 28 H 1.07998 * 126.03909 * 359.97438 * 3 2 1 29 29 H 1.08005 * 126.12900 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47110 * 5.00075 * 6 5 4 31 31 H 1.08993 * 109.47338 * 245.00101 * 6 5 4 32 32 H 1.08999 * 109.46778 * 305.17547 * 9 7 6 33 33 H 1.08996 * 109.47022 * 65.17433 * 9 7 6 34 34 H 1.08997 * 109.47060 * 185.17708 * 9 7 6 35 35 H 1.09001 * 113.77006 * 41.05410 * 13 12 10 36 36 H 1.09008 * 113.76714 * 269.66226 * 13 12 10 37 37 H 1.09000 * 113.73871 * 269.15132 * 14 13 12 38 38 H 0.97003 * 119.99940 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.76878 * 90.33926 * 23 12 10 40 40 H 1.09001 * 113.77195 * 318.93729 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0004 6 6 4.7898 -1.5009 0.0003 7 6 4.7114 -2.4699 1.1818 8 1 3.7702 -3.0180 1.1403 9 6 4.7864 -1.6835 2.4921 10 6 5.8617 -3.4409 1.1122 11 8 6.9345 -3.0801 0.6765 12 7 5.6983 -4.7106 1.5340 13 6 4.6011 -5.4501 2.1877 14 6 5.2272 -6.7147 1.5725 15 6 5.2613 -7.8930 2.5113 16 1 4.8669 -7.7977 3.5122 17 6 5.7952 -9.0932 2.0922 18 7 6.2751 -9.2095 0.8733 19 14 5.8381 -10.5536 3.2562 20 1 4.4536 -10.9006 3.6663 21 1 6.4574 -11.7157 2.5697 22 1 6.6378 -10.2054 4.4581 23 6 6.5446 -5.9195 1.5279 24 7 2.2741 -1.0599 -0.0055 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9923 2.1597 -0.0004 29 1 4.4891 1.3485 0.0003 30 1 5.6884 -0.8905 0.0900 31 1 4.8259 -2.0658 -0.9311 32 1 5.6835 -1.0644 2.4934 33 1 3.9060 -1.0477 2.5852 34 1 4.8232 -2.3783 3.3312 35 1 3.6137 -5.2116 1.7921 36 1 4.6418 -5.4248 3.2767 37 1 4.8311 -6.9665 0.5888 38 1 6.6503 -10.0540 0.5783 39 1 7.1563 -6.0321 2.4230 40 1 7.1091 -6.0559 0.6054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869246647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 64.384535 kcal Electronic energy + Delta-G solvation = -21107.075140 eV Core-core repulsion = 17924.541473 eV Total energy + Delta-G solvation = -3182.533668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27623 -39.60496 -37.33091 -35.09082 -32.74973 -32.39817 -30.07244 -29.28623 -28.62836 -26.00936 -25.32843 -25.12103 -22.57064 -21.16558 -20.18861 -19.54561 -18.10615 -17.28515 -16.69543 -16.16138 -15.87363 -15.10847 -14.68241 -14.52051 -14.21901 -14.16488 -13.53148 -13.47046 -13.11299 -12.81396 -12.67647 -12.43614 -12.22878 -12.16324 -11.92500 -11.65652 -11.45367 -11.22245 -11.19741 -10.96567 -10.78697 -10.53421 -10.36528 -9.77406 -9.27576 -9.26439 -8.96901 -8.61535 -8.58224 -7.91806 -6.18562 -4.25163 1.85267 2.40732 2.72700 3.04532 3.24543 3.30463 3.31643 3.52426 4.31686 4.38099 4.66070 4.71119 4.85709 4.89268 5.10917 5.12357 5.24151 5.39453 5.48456 5.51618 5.55789 5.67847 5.73279 5.76292 5.87048 5.93566 6.00749 6.09086 6.16850 6.21951 6.37898 6.50365 6.63384 6.72265 6.84615 6.96402 7.51873 7.71293 7.78038 8.13789 8.43080 8.65308 8.77866 9.41779 10.90988 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003457 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.751104 B = 8096.995746 C = 8619.636725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.277 4.277 4 C 0.057 3.943 5 N -0.364 5.364 6 C 0.153 3.847 7 C -0.117 4.117 8 H 0.102 0.898 9 C -0.134 4.134 10 C 0.532 3.468 11 O -0.565 6.565 12 N -0.635 5.635 13 C 0.093 3.907 14 C 0.035 3.965 15 C -0.523 4.523 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.112 3.888 24 N -0.290 5.290 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.172 0.828 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 17.869 -0.004 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.307 4.307 4 C -0.090 4.090 5 N -0.146 5.146 6 C 0.031 3.969 7 C -0.139 4.139 8 H 0.121 0.879 9 C -0.191 4.191 10 C 0.320 3.680 11 O -0.446 6.446 12 N -0.367 5.367 13 C -0.029 4.029 14 C 0.016 3.984 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.009 4.009 24 N -0.113 5.113 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.189 0.811 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.805 16.739 -0.439 18.074 hybrid contribution 0.228 0.131 0.595 0.651 sum -6.577 16.869 0.156 18.107 Atomic orbital electron populations 1.20146 0.86904 1.03136 1.02770 1.22362 0.96926 0.90876 1.00057 1.21332 0.91639 0.99626 1.18104 1.22567 0.99680 0.85031 1.01703 1.48675 1.05352 1.04613 1.55937 1.21571 0.83497 0.92585 0.99240 1.21439 0.99904 0.96159 0.96437 0.87936 1.21637 1.02222 0.99926 0.95350 1.19876 0.88455 0.81189 0.78461 1.90643 1.27944 1.76879 1.49156 1.50501 1.20886 1.07889 1.57447 1.23621 0.90233 0.91543 0.97492 1.20502 0.90013 0.90224 0.97707 1.20914 1.41254 0.94977 0.98934 0.91901 1.25036 0.94668 0.98757 0.95100 1.69943 1.39103 1.26230 1.16847 0.86594 0.78476 0.81712 0.80877 1.20027 1.21205 1.20081 1.23701 0.97925 0.78740 1.00546 1.77346 0.86503 1.22831 1.24661 0.90754 0.90949 0.90671 0.83826 0.81123 0.87479 0.89356 0.92054 0.91922 0.91736 0.91883 0.90492 0.91655 0.92513 0.90884 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.23 16 2 C 0.06 0.77 7.22 -82.41 -0.59 0.18 16 3 C -0.28 -2.92 10.74 -40.02 -0.43 -3.35 16 4 C 0.06 0.60 11.45 -17.22 -0.20 0.41 16 5 N -0.36 -4.75 3.22 -61.36 -0.20 -4.95 16 6 C 0.15 2.04 5.46 -4.04 -0.02 2.02 16 7 C -0.12 -1.75 2.66 -91.77 -0.24 -2.00 16 8 H 0.10 1.61 7.45 -51.93 -0.39 1.22 16 9 C -0.13 -1.75 9.00 37.16 0.33 -1.41 16 10 C 0.53 10.10 7.06 -10.98 -0.08 10.02 16 11 O -0.57 -12.24 17.08 5.56 0.09 -12.15 16 12 N -0.63 -12.81 3.61 -178.46 -0.64 -13.45 16 13 C 0.09 1.79 7.99 -2.98 -0.02 1.76 16 14 C 0.03 0.81 3.62 -90.85 -0.33 0.48 16 15 C -0.52 -13.26 8.77 -34.44 -0.30 -13.56 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.88 -24.45 13.27 55.43 0.74 -23.71 16 19 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.11 2.54 8.39 -2.98 -0.02 2.52 16 24 N -0.29 -4.21 12.35 33.67 0.42 -3.79 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.11 1.29 7.94 -51.93 -0.41 0.87 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.09 7.82 -51.93 -0.41 0.69 16 36 H 0.08 1.40 8.09 -51.92 -0.42 0.98 16 37 H 0.07 1.66 8.13 -51.93 -0.42 1.24 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.07 1.66 8.09 -51.93 -0.42 1.24 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -30.34 343.30 -7.30 -37.64 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.23 Total: 1.59 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.63 Total: -1.48 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.31 Total: -45.90 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.34 -7.30 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.026 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds