Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39862 * 125.89886 * 2 1 4 4 C 1.35312 * 107.92007 * 179.97438 * 3 2 1 5 5 N 1.34950 * 107.74535 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03660 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46932 * 125.00103 * 6 5 4 8 8 H 1.08997 * 109.47088 * 55.00143 * 7 6 5 9 9 C 1.53005 * 109.47106 * 295.00102 * 7 6 5 10 10 C 1.50697 * 109.46974 * 175.00479 * 7 6 5 11 11 O 1.21277 * 120.00687 * 33.88095 * 10 7 6 12 12 N 1.34785 * 119.99748 * 213.88633 * 10 7 6 13 13 C 1.47579 * 134.49063 * 354.99815 * 12 10 7 14 14 C 1.53939 * 86.11535 * 155.36160 * 13 12 10 15 15 C 1.50699 * 113.74282 * 137.95183 * 14 13 12 16 16 H 1.08001 * 120.00090 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00087 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00043 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47078 * 60.00208 * 19 17 15 21 21 H 1.48501 * 109.46894 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47189 * 300.00246 * 19 17 15 23 23 C 1.47573 * 134.49115 * 174.99907 * 12 10 7 24 24 N 1.30838 * 125.89418 * 180.29725 * 2 1 3 25 25 H 1.09003 * 109.47132 * 90.00434 * 1 2 3 26 26 H 1.08998 * 109.47330 * 210.00108 * 1 2 3 27 27 H 1.08998 * 109.47341 * 330.00175 * 1 2 3 28 28 H 1.07998 * 126.03909 * 359.97438 * 3 2 1 29 29 H 1.08005 * 126.12900 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47110 * 5.00075 * 6 5 4 31 31 H 1.08993 * 109.47338 * 245.00101 * 6 5 4 32 32 H 1.08999 * 109.46778 * 305.17547 * 9 7 6 33 33 H 1.08996 * 109.47022 * 65.17433 * 9 7 6 34 34 H 1.08997 * 109.47060 * 185.17708 * 9 7 6 35 35 H 1.09001 * 113.77006 * 41.05410 * 13 12 10 36 36 H 1.09008 * 113.76714 * 269.66226 * 13 12 10 37 37 H 1.09000 * 113.73871 * 269.15132 * 14 13 12 38 38 H 0.97003 * 119.99940 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.76878 * 90.33926 * 23 12 10 40 40 H 1.09001 * 113.77195 * 318.93729 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0004 6 6 4.7898 -1.5009 0.0003 7 6 4.7114 -2.4699 1.1818 8 1 3.7702 -3.0180 1.1403 9 6 4.7864 -1.6835 2.4921 10 6 5.8617 -3.4409 1.1122 11 8 6.9345 -3.0801 0.6765 12 7 5.6983 -4.7106 1.5340 13 6 4.6011 -5.4501 2.1877 14 6 5.2272 -6.7147 1.5725 15 6 5.2613 -7.8930 2.5113 16 1 4.8669 -7.7977 3.5122 17 6 5.7952 -9.0932 2.0922 18 7 6.2751 -9.2095 0.8733 19 14 5.8381 -10.5536 3.2562 20 1 4.4536 -10.9006 3.6663 21 1 6.4574 -11.7157 2.5697 22 1 6.6378 -10.2054 4.4581 23 6 6.5446 -5.9195 1.5279 24 7 2.2741 -1.0599 -0.0055 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9923 2.1597 -0.0004 29 1 4.4891 1.3485 0.0003 30 1 5.6884 -0.8905 0.0900 31 1 4.8259 -2.0658 -0.9311 32 1 5.6835 -1.0644 2.4934 33 1 3.9060 -1.0477 2.5852 34 1 4.8232 -2.3783 3.3312 35 1 3.6137 -5.2116 1.7921 36 1 4.6418 -5.4248 3.2767 37 1 4.8311 -6.9665 0.5888 38 1 6.6503 -10.0540 0.5783 39 1 7.1563 -6.0321 2.4230 40 1 7.1091 -6.0559 0.6054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869246647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = 46.674922 kcal Electronic energy + Delta-G solvation = -21107.843087 eV Core-core repulsion = 17924.541473 eV Total energy + Delta-G solvation = -3183.301614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16956 -41.17935 -38.96391 -36.26452 -34.66733 -33.41264 -31.08640 -30.70580 -29.65263 -27.37463 -26.89512 -26.70918 -23.88395 -22.03835 -21.75546 -20.55486 -19.63707 -18.77541 -18.33144 -17.42568 -17.13240 -16.68784 -16.19434 -16.08908 -15.44725 -15.02176 -14.82775 -14.53733 -14.17645 -14.08723 -13.87152 -13.59535 -13.46313 -13.34972 -13.23484 -13.12340 -12.85499 -12.77233 -12.59501 -12.41887 -12.33940 -12.16335 -11.51432 -11.41168 -11.14460 -10.67541 -10.55679 -10.18085 -9.62024 -9.44906 -8.18031 -6.30419 0.98736 1.41721 1.47691 1.48022 1.54525 1.55861 1.92082 2.01448 2.44368 3.12278 3.34520 3.38369 3.73077 3.91072 4.01508 4.08447 4.19338 4.28352 4.42051 4.45574 4.51850 4.55161 4.62768 4.65052 4.74511 4.80005 4.85625 4.87218 4.94765 4.96511 5.01417 5.03756 5.10603 5.29612 5.56533 5.79240 5.82856 6.13220 6.19231 6.79259 6.83574 6.85206 7.05383 7.40343 8.91761 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003457 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.751104 B = 8096.995746 C = 8619.636725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 C -0.281 4.281 4 C 0.057 3.943 5 N -0.377 5.377 6 C 0.159 3.841 7 C -0.103 4.103 8 H 0.095 0.905 9 C -0.124 4.124 10 C 0.531 3.469 11 O -0.593 6.593 12 N -0.638 5.638 13 C 0.113 3.887 14 C 0.022 3.978 15 C -0.530 4.530 16 H 0.073 0.927 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.115 3.885 24 N -0.339 5.339 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.204 0.796 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.817 19.782 1.378 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.310 4.310 4 C -0.088 4.088 5 N -0.158 5.158 6 C 0.037 3.963 7 C -0.125 4.125 8 H 0.114 0.886 9 C -0.182 4.182 10 C 0.321 3.679 11 O -0.476 6.476 12 N -0.371 5.371 13 C -0.008 4.008 14 C 0.003 3.997 15 C -0.568 4.568 16 H 0.091 0.909 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.193 1.193 23 C -0.008 4.008 24 N -0.162 5.162 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.188 0.812 29 H 0.221 0.779 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.985 18.679 0.958 20.337 hybrid contribution 0.558 -0.378 0.112 0.683 sum -7.427 18.301 1.069 19.779 Atomic orbital electron populations 1.20270 0.84974 1.04021 1.03612 1.22998 0.98346 0.90967 0.98692 1.21718 0.91367 1.00494 1.17430 1.23205 1.01147 0.84248 1.00244 1.48598 1.04714 1.05360 1.57148 1.21421 0.84574 0.92655 0.97686 1.21337 0.97186 0.95555 0.98430 0.88628 1.21579 1.03007 0.99723 0.93851 1.20586 0.89221 0.81021 0.77073 1.90623 1.29517 1.77341 1.50108 1.50478 1.20495 1.08051 1.58047 1.23499 0.90643 0.88462 0.98213 1.20416 0.91159 0.91677 0.96465 1.21307 1.40389 0.95610 0.99514 0.90910 1.25853 0.94494 1.01626 0.96438 1.70081 1.40540 1.26759 1.18754 0.85570 0.78767 0.78221 0.78874 1.19087 1.21599 1.19314 1.23419 0.97573 0.80572 0.99233 1.77306 0.87413 1.24588 1.26941 0.89854 0.91531 0.88306 0.81192 0.77895 0.85965 0.90889 0.91266 0.91003 0.91864 0.89762 0.88711 0.94694 0.92758 0.91007 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.45 71.24 0.74 -0.32 16 2 C 0.06 1.25 7.22 43.10 0.31 1.56 16 3 C -0.28 -5.12 10.74 21.99 0.24 -4.88 16 4 C 0.06 1.06 11.45 83.54 0.96 2.01 16 5 N -0.38 -9.25 3.22 -348.05 -1.12 -10.37 16 6 C 0.16 4.10 5.46 86.38 0.47 4.57 16 7 C -0.10 -2.97 2.66 -11.54 -0.03 -3.00 16 8 H 0.10 2.92 7.45 -2.39 -0.02 2.90 16 9 C -0.12 -2.98 9.00 71.98 0.65 -2.33 16 10 C 0.53 19.99 7.06 87.65 0.62 20.61 16 11 O -0.59 -25.74 17.08 -3.02 -0.05 -25.79 16 12 N -0.64 -25.76 3.61 -836.92 -3.02 -28.78 16 13 C 0.11 4.23 7.99 86.48 0.69 4.92 16 14 C 0.02 1.05 3.62 -10.88 -0.04 1.01 16 15 C -0.53 -26.89 8.77 25.60 0.22 -26.67 16 16 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 17 C 0.02 0.83 5.46 84.66 0.46 1.29 16 18 N -0.92 -52.36 13.27 21.45 0.28 -52.08 16 19 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C 0.11 5.34 8.39 86.48 0.73 6.06 16 24 N -0.34 -9.49 12.35 -47.39 -0.59 -10.08 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.12 2.74 7.94 -2.39 -0.02 2.72 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.63 7.90 -2.39 -0.02 1.61 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.80 7.82 -2.39 -0.02 2.78 16 36 H 0.09 3.24 8.09 -2.38 -0.02 3.22 16 37 H 0.03 1.86 8.13 -2.39 -0.02 1.84 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 39 H 0.07 3.32 8.09 -2.39 -0.02 3.30 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -66.29 343.30 4.57 -61.72 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.01 Total: 17.22 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.02 Total: 4.84 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -4.44 Total: -101.30 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -66.29 4.57 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.400 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds