Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39871 * 125.90157 * 2 1 4 4 C 1.35316 * 107.92429 * 179.97438 * 3 2 1 5 5 N 1.34948 * 107.74526 * 0.02562 * 4 3 2 6 6 C 1.46503 * 126.03985 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46861 * 124.99806 * 6 5 4 8 8 H 1.08998 * 109.47354 * 305.00613 * 7 6 5 9 9 C 1.53000 * 109.47151 * 65.00416 * 7 6 5 10 10 C 1.50700 * 109.47260 * 185.00429 * 7 6 5 11 11 O 1.21286 * 119.99450 * 359.97438 * 10 7 6 12 12 N 1.34772 * 120.00116 * 180.02562 * 10 7 6 13 13 C 1.47066 * 136.05397 * 179.97438 * 12 10 7 14 14 C 1.53503 * 87.98596 * 152.84244 * 13 12 10 15 15 C 1.50701 * 114.20491 * 139.65156 * 14 13 12 16 16 H 1.07990 * 120.00399 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99442 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99554 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00372 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46675 * 90.00284 * 19 17 15 21 21 H 1.48502 * 109.47233 * 210.00305 * 19 17 15 22 22 H 1.48498 * 109.46897 * 330.00764 * 19 17 15 23 23 C 1.47060 * 136.06000 * 359.94777 * 12 10 7 24 24 N 1.30844 * 125.89941 * 180.30528 * 2 1 3 25 25 H 1.09002 * 109.47229 * 89.99862 * 1 2 3 26 26 H 1.08999 * 109.47447 * 209.99592 * 1 2 3 27 27 H 1.08996 * 109.47106 * 330.00142 * 1 2 3 28 28 H 1.08000 * 126.03961 * 0.02562 * 3 2 1 29 29 H 1.08004 * 126.13031 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46521 * 5.00506 * 6 5 4 31 31 H 1.08993 * 109.47074 * 245.00148 * 6 5 4 32 32 H 1.08993 * 109.47329 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.47106 * 300.00009 * 9 7 6 34 34 H 1.09007 * 109.46611 * 59.99721 * 9 7 6 35 35 H 1.09000 * 113.46827 * 267.61848 * 13 12 10 36 36 H 1.09003 * 113.47151 * 38.06638 * 13 12 10 37 37 H 1.08995 * 114.20536 * 272.48261 * 14 13 12 38 38 H 0.97001 * 119.99464 * 179.97438 * 18 17 15 39 39 H 1.09007 * 113.46761 * 321.93701 * 23 12 10 40 40 H 1.09003 * 113.46830 * 92.37669 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6088 -0.6341 0.0004 6 6 4.7899 -1.5009 0.0003 7 6 4.7115 -2.4698 1.1818 8 1 4.5860 -1.9061 2.1062 9 6 3.5195 -3.4100 0.9920 10 6 5.9817 -3.2773 1.2543 11 8 6.8628 -3.0961 0.4408 12 7 6.1382 -4.2017 2.2226 13 6 7.1860 -5.1556 2.6165 14 6 6.6519 -5.0659 4.0528 15 6 6.6165 -6.3841 4.7823 16 1 6.9511 -7.2840 4.2879 17 6 6.1570 -6.4411 6.0810 18 7 6.1265 -7.5915 6.7178 19 14 5.5790 -4.8844 6.9365 20 1 4.1261 -4.6964 6.6934 21 1 5.8257 -5.0009 8.3962 22 1 6.3255 -3.7183 6.3997 23 6 5.3368 -4.6999 3.3505 24 7 2.2742 -1.0599 -0.0056 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 0.0004 29 1 4.4892 1.3485 0.0003 30 1 5.6884 -0.8904 0.0901 31 1 4.8259 -2.0657 -0.9311 32 1 3.4639 -4.1006 1.8334 33 1 2.6007 -2.8259 0.9395 34 1 3.6450 -3.9737 0.0675 35 1 7.0650 -6.1422 2.1693 36 1 8.1962 -4.7620 2.5037 37 1 7.0850 -4.2569 4.6409 38 1 5.8036 -7.6315 7.6316 39 1 4.7743 -3.9186 3.8619 40 1 4.7237 -5.5653 3.0986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869246648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = 57.905348 kcal Electronic energy + Delta-G solvation = -21292.218075 eV Core-core repulsion = 18109.403449 eV Total energy + Delta-G solvation = -3182.814626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20077 -41.37263 -39.16098 -36.27333 -34.70190 -33.55815 -31.44410 -30.69324 -29.74305 -27.35482 -26.89536 -26.60555 -23.98324 -22.02192 -21.53339 -20.65648 -19.88118 -19.13417 -18.48987 -17.34449 -17.04315 -16.86108 -16.19123 -15.87345 -15.55091 -15.03941 -14.91515 -14.61026 -14.38346 -14.29840 -13.97074 -13.74871 -13.52981 -13.47434 -13.22681 -13.19880 -12.82255 -12.75499 -12.60793 -12.35241 -12.23561 -11.82726 -11.58913 -11.29799 -11.27289 -10.83268 -10.65147 -10.14224 -9.70632 -9.47172 -8.29129 -6.37056 0.96136 1.39005 1.40412 1.42456 1.49772 1.50848 1.90060 1.97572 2.36217 3.00777 3.34088 3.40517 3.61651 3.93503 3.97160 4.00605 4.07411 4.25678 4.27789 4.42045 4.46707 4.55003 4.56577 4.66448 4.74792 4.77421 4.81245 4.83570 4.86562 4.93685 4.96884 5.09073 5.23103 5.30497 5.35860 5.58512 5.86800 6.11645 6.26636 6.69100 6.76668 6.82856 6.99755 7.30435 8.86413 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022150 B = 0.004091 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.818458 B = 6842.933037 C = 7552.051928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.054 3.946 3 C -0.283 4.283 4 C 0.055 3.945 5 N -0.380 5.380 6 C 0.161 3.839 7 C -0.104 4.104 8 H 0.104 0.896 9 C -0.146 4.146 10 C 0.543 3.457 11 O -0.586 6.586 12 N -0.639 5.639 13 C 0.116 3.884 14 C -0.019 4.019 15 C -0.512 4.512 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.943 5.943 19 Si 0.935 3.065 20 H -0.260 1.260 21 H -0.289 1.289 22 H -0.244 1.244 23 C 0.098 3.902 24 N -0.328 5.328 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.203 0.797 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.268 0.732 39 H 0.074 0.926 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 18.871 -11.354 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C -0.312 4.312 4 C -0.090 4.090 5 N -0.162 5.162 6 C 0.039 3.961 7 C -0.126 4.126 8 H 0.122 0.878 9 C -0.203 4.203 10 C 0.334 3.666 11 O -0.468 6.468 12 N -0.372 5.372 13 C -0.007 4.007 14 C -0.038 4.038 15 C -0.550 4.550 16 H 0.061 0.939 17 C -0.176 4.176 18 N -0.582 5.582 19 Si 0.759 3.241 20 H -0.184 1.184 21 H -0.216 1.216 22 H -0.167 1.167 23 C -0.025 4.025 24 N -0.152 5.152 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.186 0.814 29 H 0.220 0.780 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.012 17.680 -11.797 23.086 hybrid contribution 0.093 0.646 0.633 0.909 sum -8.920 18.325 -11.165 23.239 Atomic orbital electron populations 1.20268 0.84978 1.03983 1.03673 1.23028 0.98363 0.91053 0.98701 1.21728 0.91479 1.00556 1.17396 1.23201 1.01135 0.84390 1.00319 1.48671 1.04941 1.05340 1.57236 1.21413 0.84076 0.92359 0.98212 1.21342 0.93160 0.97119 1.00953 0.87826 1.21966 0.97745 0.98906 1.01689 1.20327 0.88311 0.79752 0.78243 1.90648 1.45214 1.70018 1.40951 1.49829 1.22636 1.35553 1.29167 1.23016 0.92126 0.91581 0.93947 1.20826 0.93714 0.96832 0.92430 1.20924 1.42968 0.93015 0.98104 0.93887 1.25828 0.94866 0.99065 0.97815 1.70036 1.47927 1.27409 1.12817 0.85893 0.80055 0.80632 0.77543 1.18419 1.21557 1.16723 1.23645 0.97285 0.97646 0.83909 1.77143 0.87271 1.23909 1.26863 0.89676 0.91407 0.88607 0.81392 0.77997 0.86420 0.89831 0.92302 0.88405 0.93066 0.90372 0.91342 0.91161 0.92274 0.90717 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.45 71.23 0.74 -0.24 16 2 C 0.05 1.14 7.22 43.10 0.31 1.45 16 3 C -0.28 -5.02 10.74 21.99 0.24 -4.78 16 4 C 0.05 0.99 11.45 83.54 0.96 1.94 16 5 N -0.38 -8.79 3.68 -348.06 -1.28 -10.07 16 6 C 0.16 3.80 5.31 86.38 0.46 4.26 16 7 C -0.10 -2.80 2.81 -11.54 -0.03 -2.84 16 8 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 9 C -0.15 -3.94 8.80 71.98 0.63 -3.30 16 10 C 0.54 18.43 7.40 87.66 0.65 19.08 16 11 O -0.59 -22.75 16.70 -3.05 -0.05 -22.80 16 12 N -0.64 -22.94 3.64 -858.27 -3.12 -26.06 16 13 C 0.12 4.45 8.18 83.18 0.68 5.13 16 14 C -0.02 -0.78 3.00 -11.20 -0.03 -0.81 16 15 C -0.51 -26.55 9.37 25.60 0.24 -26.31 16 16 H 0.04 2.49 8.06 -2.92 -0.02 2.46 16 17 C 0.02 1.23 5.47 84.65 0.46 1.70 16 18 N -0.94 -55.22 13.96 21.45 0.30 -54.92 16 19 Si 0.94 39.95 27.43 68.60 1.88 41.83 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.24 -9.56 6.21 99.48 0.62 -8.94 16 23 C 0.10 3.55 5.84 83.19 0.49 4.03 16 24 N -0.33 -8.40 9.64 -47.39 -0.46 -8.86 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.20 2.13 8.06 -2.91 -0.02 2.10 16 30 H 0.12 2.43 7.88 -2.39 -0.02 2.41 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.62 6.33 -2.39 -0.02 1.61 16 33 H 0.10 2.66 5.37 -2.39 -0.01 2.65 16 34 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 2.92 6.50 -2.39 -0.02 2.91 16 38 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.07 2.43 8.14 -2.38 -0.02 2.42 16 40 H 0.09 3.17 8.05 -2.39 -0.02 3.15 16 Total: -1.00 -65.83 331.34 4.00 -61.83 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.93 Total: 19.73 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.79 Total: -0.69 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.56 Total: -99.90 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Total: -65.83 4.00 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.739 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds