Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35749 * 117.00025 * 2 1 4 4 C 1.39459 * 120.78454 * 90.00158 * 3 2 1 5 5 C 1.50697 * 120.31622 * 359.97438 * 4 3 2 6 6 C 1.38026 * 119.36667 * 180.02562 * 4 3 2 7 7 N 1.31830 * 120.99751 * 0.02562 * 6 4 3 8 8 C 1.33026 * 121.70921 * 359.97438 * 7 6 4 9 9 C 1.47386 * 119.73372 * 179.97438 * 8 7 6 10 10 N 1.29794 * 120.00396 * 359.97438 * 9 8 7 11 11 N 1.40101 * 120.00153 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.00104 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46566 * 329.99513 * 12 11 10 14 14 C 1.52997 * 109.47289 * 89.99778 * 12 11 10 15 15 C 1.50697 * 109.47015 * 210.00236 * 12 11 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47155 * 89.99872 * 19 17 15 21 21 H 1.48499 * 109.47102 * 210.00327 * 19 17 15 22 22 H 1.48499 * 109.46909 * 330.00049 * 19 17 15 23 23 C 1.38904 * 120.78474 * 270.28186 * 3 2 1 24 24 C 1.50706 * 120.51349 * 359.97102 * 23 3 2 25 25 H 1.09003 * 109.47086 * 299.99833 * 1 2 3 26 26 H 1.09000 * 109.47582 * 60.00337 * 1 2 3 27 27 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47070 * 270.02513 * 5 4 3 29 29 H 1.08999 * 109.47016 * 30.02532 * 5 4 3 30 30 H 1.09005 * 109.46997 * 150.02137 * 5 4 3 31 31 H 1.08001 * 119.49727 * 179.97438 * 6 4 3 32 32 H 1.07999 * 119.99385 * 180.02562 * 9 8 7 33 33 H 0.96995 * 119.99712 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 35 35 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 36 36 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 37 37 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46915 * 270.22736 * 24 23 3 39 39 H 1.08998 * 109.47607 * 30.23140 * 24 23 3 40 40 H 1.09004 * 109.46982 * 150.23334 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3693 1.8455 1.1981 5 6 2.0382 1.1968 2.5174 6 6 2.9953 3.0752 1.1639 7 7 3.2898 3.6555 0.0175 8 6 2.9996 3.0861 -1.1493 9 6 3.3482 3.7741 -2.4052 10 7 3.9355 4.9311 -2.3700 11 7 4.2663 5.5853 -3.5639 12 6 4.9297 6.8910 -3.5243 13 1 4.6260 7.4255 -2.6242 14 6 6.4467 6.6921 -3.5120 15 6 4.5376 7.6907 -4.7398 16 1 3.8622 7.2686 -5.4692 17 6 5.0412 8.9615 -4.9208 18 7 5.8632 9.4757 -4.0324 19 14 4.5557 9.9526 -6.4279 20 1 3.3376 10.7467 -6.1268 21 1 5.6651 10.8684 -6.7966 22 1 4.2786 9.0305 -7.5585 23 6 2.3628 1.8456 -1.1933 24 6 2.0290 1.2034 -2.5152 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.0428 1.5070 2.8350 29 1 2.0627 0.1129 2.4056 30 1 2.7699 1.5015 3.2658 31 1 3.2469 3.5698 2.0905 32 1 3.1142 3.3159 -3.3547 33 1 4.0568 5.1735 -4.4167 34 1 6.9402 7.6636 -3.4830 35 1 6.7503 6.1575 -4.4121 36 1 6.7303 6.1136 -2.6328 37 1 6.2172 10.3698 -4.1595 38 1 2.8628 0.5793 -2.8367 39 1 1.1359 0.5883 -2.4051 40 1 1.8470 1.9783 -3.2599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872358507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 32.405700 kcal Electronic energy + Delta-G solvation = -20717.820846 eV Core-core repulsion = 17533.900472 eV Total energy + Delta-G solvation = -3183.920374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66285 -38.12818 -36.43392 -34.46145 -33.37385 -32.52471 -31.15554 -28.49461 -28.07620 -26.52305 -26.19731 -25.21229 -23.32068 -21.66137 -20.49775 -20.11795 -17.75572 -17.68302 -16.45855 -15.92766 -15.62475 -15.04878 -14.66977 -14.40916 -14.32487 -14.10617 -13.70761 -13.33960 -13.11128 -12.70541 -12.61826 -12.46119 -12.33108 -12.26272 -11.99825 -11.79210 -11.44947 -11.04544 -10.87994 -10.59639 -10.25240 -10.24603 -10.17203 -9.50080 -9.31458 -9.15262 -9.04649 -8.76698 -8.49597 -6.91149 -6.14385 -4.23092 0.91183 1.15480 2.85150 3.24070 3.30003 3.32034 3.41539 3.74634 4.09690 4.34680 4.45428 4.67336 4.79233 4.94119 5.00407 5.05619 5.18017 5.19919 5.26584 5.36725 5.43580 5.44941 5.56927 5.62756 5.83713 5.99478 6.05473 6.08157 6.24158 6.47113 6.74196 6.92217 7.00849 7.14431 7.25288 7.56465 7.75849 7.83784 8.10204 8.20480 8.27402 8.83473 9.26935 9.43543 10.91605 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.003154 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.690850 B = 8874.126470 C = 9318.883094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.134 3.866 4 C -0.173 4.173 5 C -0.102 4.102 6 C 0.113 3.887 7 N -0.459 5.459 8 C 0.218 3.782 9 C -0.034 4.034 10 N -0.144 5.144 11 N -0.614 5.614 12 C 0.295 3.705 13 H 0.045 0.955 14 C -0.150 4.150 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.148 4.148 24 C -0.104 4.104 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.369 0.631 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.014 0.986 37 H 0.265 0.735 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -17.926 8.311 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.083 3.917 4 C -0.177 4.177 5 C -0.160 4.160 6 C -0.046 4.046 7 N -0.169 5.169 8 C 0.080 3.920 9 C -0.241 4.241 10 N 0.039 4.961 11 N -0.351 5.351 12 C 0.193 3.807 13 H 0.063 0.937 14 C -0.210 4.210 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.153 4.153 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.205 0.795 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.608 -16.185 8.920 20.387 hybrid contribution -1.103 -0.777 -1.745 2.206 sum -9.711 -16.962 7.175 20.821 Atomic orbital electron populations 1.22994 0.78674 1.03234 1.00991 1.85935 1.19923 1.24551 1.94260 1.18437 0.96279 0.85687 0.91258 1.21206 1.03908 0.96822 0.95764 1.20568 1.01582 1.00865 0.92951 1.22592 0.94362 0.91128 0.96498 1.68026 1.17088 1.34367 0.97410 1.19163 0.92571 0.89380 0.90878 1.23160 1.10638 0.96056 0.94244 1.74209 1.01627 1.06193 1.14051 1.49335 1.63981 1.21750 1.00000 1.18617 0.88107 0.75978 0.98027 0.93696 1.22200 0.99561 1.02202 0.97005 1.21220 1.28850 0.99978 1.07109 0.92154 1.24860 0.94675 0.97254 0.96815 1.69892 1.31093 1.16470 1.34755 0.86414 0.78177 0.79835 0.82479 1.20516 1.21001 1.19873 1.21022 1.02823 0.95382 0.96114 1.20646 1.01895 1.00465 0.93127 0.93418 0.93257 0.88677 0.91563 0.91120 0.91197 0.82581 0.86847 0.79530 0.89051 0.95499 0.96670 0.92507 0.90719 0.91666 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.81 101.05 1.09 1.36 16 2 O -0.33 -3.65 8.88 -18.96 -0.17 -3.82 16 3 C 0.13 1.72 5.72 -38.88 -0.22 1.50 16 4 C -0.17 -2.11 5.92 -104.25 -0.62 -2.72 16 5 C -0.10 -0.89 9.83 36.00 0.35 -0.54 16 6 C 0.11 1.56 10.84 -17.63 -0.19 1.37 16 7 N -0.46 -8.09 10.06 -9.98 -0.10 -8.19 16 8 C 0.22 3.66 6.74 -83.15 -0.56 3.10 16 9 C -0.03 -0.62 10.19 -14.69 -0.15 -0.77 16 10 N -0.14 -3.13 11.22 32.14 0.36 -2.77 16 11 N -0.61 -13.86 6.10 -5.88 -0.04 -13.89 16 12 C 0.29 7.64 3.23 -69.08 -0.22 7.41 16 13 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.15 -3.77 9.29 37.16 0.35 -3.42 16 15 C -0.53 -14.36 8.74 -34.44 -0.30 -14.66 16 16 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.88 -24.81 11.32 55.43 0.63 -24.19 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.15 -2.05 5.95 -103.90 -0.62 -2.67 16 24 C -0.10 -1.14 9.33 36.01 0.34 -0.80 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.36 7.30 -51.93 -0.38 -0.02 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.61 7.61 -51.93 -0.39 0.21 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.11 1.72 6.31 -52.49 -0.33 1.39 16 33 H 0.37 7.54 8.58 -182.60 -1.57 5.97 16 34 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.61 6.49 -51.93 -0.34 0.28 16 40 H 0.07 0.77 6.33 -51.93 -0.33 0.44 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -30.80 338.26 -7.09 -37.89 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.00 Total: 3.24 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -0.85 Total: -9.12 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.85 Total: -49.04 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.17 Total: -3.82 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.80 -7.09 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.297 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds