Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35749 * 117.00025 * 2 1 4 4 C 1.39459 * 120.78454 * 90.00158 * 3 2 1 5 5 C 1.50697 * 120.31622 * 359.97438 * 4 3 2 6 6 C 1.38026 * 119.36667 * 180.02562 * 4 3 2 7 7 N 1.31830 * 120.99751 * 0.02562 * 6 4 3 8 8 C 1.33026 * 121.70921 * 359.97438 * 7 6 4 9 9 C 1.47386 * 119.73372 * 179.97438 * 8 7 6 10 10 N 1.29794 * 120.00396 * 359.97438 * 9 8 7 11 11 N 1.40101 * 120.00153 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.00104 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.46566 * 329.99513 * 12 11 10 14 14 C 1.52997 * 109.47289 * 89.99778 * 12 11 10 15 15 C 1.50697 * 109.47015 * 210.00236 * 12 11 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47155 * 89.99872 * 19 17 15 21 21 H 1.48499 * 109.47102 * 210.00327 * 19 17 15 22 22 H 1.48499 * 109.46909 * 330.00049 * 19 17 15 23 23 C 1.38904 * 120.78474 * 270.28186 * 3 2 1 24 24 C 1.50706 * 120.51349 * 359.97102 * 23 3 2 25 25 H 1.09003 * 109.47086 * 299.99833 * 1 2 3 26 26 H 1.09000 * 109.47582 * 60.00337 * 1 2 3 27 27 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47070 * 270.02513 * 5 4 3 29 29 H 1.08999 * 109.47016 * 30.02532 * 5 4 3 30 30 H 1.09005 * 109.46997 * 150.02137 * 5 4 3 31 31 H 1.08001 * 119.49727 * 179.97438 * 6 4 3 32 32 H 1.07999 * 119.99385 * 180.02562 * 9 8 7 33 33 H 0.96995 * 119.99712 * 359.97438 * 11 10 9 34 34 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 35 35 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 36 36 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 37 37 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.46915 * 270.22736 * 24 23 3 39 39 H 1.08998 * 109.47607 * 30.23140 * 24 23 3 40 40 H 1.09004 * 109.46982 * 150.23334 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 2.3693 1.8455 1.1981 5 6 2.0382 1.1968 2.5174 6 6 2.9953 3.0752 1.1639 7 7 3.2898 3.6555 0.0175 8 6 2.9996 3.0861 -1.1493 9 6 3.3482 3.7741 -2.4052 10 7 3.9355 4.9311 -2.3700 11 7 4.2663 5.5853 -3.5639 12 6 4.9297 6.8910 -3.5243 13 1 4.6260 7.4255 -2.6242 14 6 6.4467 6.6921 -3.5120 15 6 4.5376 7.6907 -4.7398 16 1 3.8622 7.2686 -5.4692 17 6 5.0412 8.9615 -4.9208 18 7 5.8632 9.4757 -4.0324 19 14 4.5557 9.9526 -6.4279 20 1 3.3376 10.7467 -6.1268 21 1 5.6651 10.8684 -6.7966 22 1 4.2786 9.0305 -7.5585 23 6 2.3628 1.8456 -1.1933 24 6 2.0290 1.2034 -2.5152 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.0428 1.5070 2.8350 29 1 2.0627 0.1129 2.4056 30 1 2.7699 1.5015 3.2658 31 1 3.2469 3.5698 2.0905 32 1 3.1142 3.3159 -3.3547 33 1 4.0568 5.1735 -4.4167 34 1 6.9402 7.6636 -3.4830 35 1 6.7503 6.1575 -4.4121 36 1 6.7303 6.1136 -2.6328 37 1 6.2172 10.3698 -4.1595 38 1 2.8628 0.5793 -2.8367 39 1 1.1359 0.5883 -2.4051 40 1 1.8470 1.9783 -3.2599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872358507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = 12.251720 kcal Electronic energy + Delta-G solvation = -20718.694788 eV Core-core repulsion = 17533.900472 eV Total energy + Delta-G solvation = -3184.794316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69174 -39.10559 -38.04340 -36.05620 -34.73419 -33.57451 -32.92769 -29.84765 -28.99486 -27.69962 -27.28764 -27.10941 -24.54118 -22.84488 -22.18344 -21.44947 -19.18212 -18.75323 -18.08420 -17.09221 -16.87901 -16.72035 -15.95669 -15.50209 -15.28997 -15.13449 -15.05279 -14.52502 -14.39741 -14.23202 -14.00599 -13.52613 -13.34393 -13.24074 -13.12920 -12.91907 -12.77162 -12.67867 -12.63359 -12.45290 -12.21704 -12.07240 -11.18571 -11.05641 -10.83329 -10.59772 -10.42434 -10.17145 -9.95291 -8.52093 -8.18213 -6.35981 -0.23760 0.13393 1.43128 1.43994 1.53794 1.55130 2.06764 2.43795 2.58163 2.96317 3.10792 3.32140 3.71396 3.83106 3.94247 4.28207 4.34610 4.40035 4.44855 4.47613 4.59464 4.68839 4.73655 4.79382 4.81544 4.83289 4.96793 5.02804 5.09302 5.11070 5.23559 5.26011 5.28724 5.50383 5.60371 5.74462 5.84432 6.13826 6.36942 6.38511 6.81412 7.06380 7.35353 7.73266 8.87252 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.003154 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.690850 B = 8874.126470 C = 9318.883094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.129 3.871 4 C -0.156 4.156 5 C -0.101 4.101 6 C 0.096 3.904 7 N -0.499 5.499 8 C 0.175 3.825 9 C 0.008 3.992 10 N -0.205 5.205 11 N -0.632 5.632 12 C 0.306 3.694 13 H -0.001 1.001 14 C -0.136 4.136 15 C -0.549 4.549 16 H 0.064 0.936 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.973 3.027 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.264 1.264 23 C -0.138 4.138 24 C -0.106 4.106 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.141 0.859 33 H 0.376 0.624 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.014 0.986 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -20.315 8.439 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.078 3.922 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.062 4.062 7 N -0.209 5.209 8 C 0.038 3.962 9 C -0.201 4.201 10 N -0.017 5.017 11 N -0.370 5.370 12 C 0.203 3.797 13 H 0.017 0.983 14 C -0.195 4.195 15 C -0.588 4.588 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.798 3.202 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.144 4.144 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.158 0.842 33 H 0.213 0.787 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.434 -18.593 9.052 23.162 hybrid contribution -0.717 -0.360 -1.533 1.730 sum -11.151 -18.953 7.520 23.240 Atomic orbital electron populations 1.23285 0.76586 1.05238 1.01532 1.85937 1.21795 1.23204 1.94237 1.18563 0.96341 0.86231 0.91079 1.21604 1.01184 0.95760 0.97387 1.20674 1.03031 1.00851 0.91220 1.22988 0.94905 0.92162 0.96164 1.67906 1.18188 1.36097 0.98738 1.19203 0.95711 0.91055 0.90272 1.23812 1.05805 0.94257 0.96235 1.74234 1.05375 1.08357 1.13762 1.48721 1.66348 1.21319 1.00617 1.18161 0.88473 0.77403 0.95710 0.98292 1.22017 0.99322 1.00952 0.97233 1.21517 1.29082 1.00667 1.07498 0.91749 1.25751 0.94486 0.98254 0.99760 1.70028 1.31952 1.16849 1.36517 0.85331 0.77788 0.78224 0.78899 1.20233 1.20489 1.18821 1.21260 1.00966 0.94129 0.97995 1.20746 1.03055 1.00781 0.91658 0.92638 0.93015 0.86010 0.89692 0.90545 0.89662 0.80540 0.84196 0.78690 0.91116 0.94774 0.96670 0.92353 0.89827 0.89771 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 113.37 1.23 1.54 16 2 O -0.34 -6.29 8.88 -90.75 -0.81 -7.10 16 3 C 0.13 3.00 5.72 22.72 0.13 3.13 16 4 C -0.16 -3.43 5.92 -19.62 -0.12 -3.54 16 5 C -0.10 -1.40 9.83 71.24 0.70 -0.70 16 6 C 0.10 2.57 10.84 84.64 0.92 3.49 16 7 N -0.50 -17.74 10.06 -185.50 -1.87 -19.61 16 8 C 0.17 5.82 6.74 41.68 0.28 6.10 16 9 C 0.01 0.30 10.19 87.40 0.89 1.19 16 10 N -0.20 -9.24 11.22 -52.22 -0.59 -9.82 16 11 N -0.63 -29.68 6.10 -172.52 -1.05 -30.73 16 12 C 0.31 16.66 3.23 44.24 0.14 16.80 16 13 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C -0.14 -7.11 9.29 71.98 0.67 -6.44 16 15 C -0.55 -30.38 8.74 25.60 0.22 -30.16 16 16 H 0.06 3.42 7.79 -2.91 -0.02 3.40 16 17 C 0.02 0.98 5.30 84.66 0.45 1.43 16 18 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 19 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 23 C -0.14 -3.58 5.95 -19.40 -0.12 -3.70 16 24 C -0.11 -2.04 9.33 71.24 0.66 -1.37 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.58 7.30 -2.39 -0.02 0.57 16 27 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.03 7.61 -2.39 -0.02 1.01 16 30 H 0.08 0.97 8.09 -2.38 -0.02 0.95 16 31 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.14 4.11 6.31 -2.91 -0.02 4.09 16 33 H 0.38 15.78 8.58 -213.33 -1.83 13.95 16 34 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 35 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.31 6.49 -2.39 -0.02 1.29 16 40 H 0.08 1.43 6.33 -2.38 -0.02 1.42 16 Total: -1.00 -69.41 338.26 3.24 -66.17 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.78 Total: 21.02 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.06 Total: -12.25 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -3.26 Total: -112.78 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.81 Total: -7.10 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.41 3.24 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.423 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds