Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 116.99862 * 2 1 4 4 C 1.39464 * 120.78570 * 90.00294 * 3 2 1 5 5 C 1.50703 * 120.31257 * 0.02562 * 4 3 2 6 6 C 1.38019 * 119.37279 * 180.29515 * 4 3 2 7 7 N 1.31831 * 120.99206 * 359.43041 * 6 4 3 8 8 C 1.33029 * 121.71050 * 0.58475 * 7 6 4 9 9 C 1.47382 * 119.73749 * 179.73150 * 8 7 6 10 10 N 1.29807 * 120.00014 * 359.97061 * 9 8 7 11 11 N 1.40099 * 119.99973 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00090 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.46736 * 30.00793 * 12 11 10 14 14 C 1.52992 * 109.47093 * 270.00323 * 12 11 10 15 15 C 1.50699 * 109.47058 * 150.00390 * 12 11 10 16 16 H 1.08004 * 120.00241 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00125 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99832 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00015 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46555 * 90.00573 * 19 17 15 21 21 H 1.48498 * 109.47067 * 209.99722 * 19 17 15 22 22 H 1.48493 * 109.47481 * 330.00333 * 19 17 15 23 23 C 1.38914 * 120.78883 * 270.02433 * 3 2 1 24 24 C 1.50701 * 120.50916 * 359.95546 * 23 3 2 25 25 H 1.09001 * 109.47210 * 299.99714 * 1 2 3 26 26 H 1.08996 * 109.47588 * 60.00041 * 1 2 3 27 27 H 1.09003 * 109.47246 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 90.00126 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00226 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00207 * 5 4 3 31 31 H 1.07997 * 119.50430 * 179.72221 * 6 4 3 32 32 H 1.08000 * 120.00100 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99929 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47713 * 299.99871 * 14 12 11 35 35 H 1.09005 * 109.47622 * 60.00212 * 14 12 11 36 36 H 1.09006 * 109.47279 * 179.97438 * 14 12 11 37 37 H 0.96998 * 119.99887 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47225 * 90.00506 * 24 23 3 39 39 H 1.09003 * 109.46527 * 210.00032 * 24 23 3 40 40 H 1.08993 * 109.47206 * 329.99980 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 2.3693 1.8455 1.1981 5 6 2.0393 1.1963 2.5174 6 6 2.9902 3.0778 1.1641 7 7 3.2903 3.6552 0.0176 8 6 3.0002 3.0859 -1.1491 9 6 3.3503 3.7731 -2.4050 10 7 3.9390 4.9295 -2.3698 11 7 4.2713 5.5830 -3.5637 12 6 4.9352 6.8883 -3.5240 13 1 5.5470 6.9575 -2.6245 14 6 3.8806 7.9966 -3.5101 15 6 5.8111 7.0436 -4.7404 16 1 5.8673 6.2496 -5.4703 17 6 6.5407 8.1994 -4.9215 18 7 6.4727 9.1661 -4.0325 19 14 7.6270 8.3916 -6.4290 20 1 6.8430 9.0096 -7.5284 21 1 8.7846 9.2607 -6.0975 22 1 8.1169 7.0575 -6.8596 23 6 2.3676 1.8434 -1.1934 24 6 2.0394 1.1983 -2.5152 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 2.8756 0.5736 2.8353 29 1 1.1482 0.5785 2.4055 30 1 1.8553 1.9672 3.2658 31 1 3.2381 3.5742 2.0906 32 1 3.1171 3.3146 -3.3547 33 1 4.0612 5.1715 -4.4166 34 1 3.2688 7.9274 -4.4095 35 1 3.2470 7.8844 -2.6302 36 1 4.3745 8.9679 -3.4801 37 1 6.9863 9.9791 -4.1597 38 1 1.0444 1.5087 -2.8339 39 1 2.7723 1.5057 -3.2613 40 1 2.0644 0.1141 -2.4065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872358511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = 32.444662 kcal Electronic energy + Delta-G solvation = -20717.004346 eV Core-core repulsion = 17533.085661 eV Total energy + Delta-G solvation = -3183.918684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66197 -38.13005 -36.43210 -34.45886 -33.37628 -32.52446 -31.15502 -28.52296 -28.03214 -26.56026 -26.17784 -25.21204 -23.32323 -21.65455 -20.50056 -20.12198 -17.75922 -17.67663 -16.44889 -15.95620 -15.60471 -15.05132 -14.67277 -14.43493 -14.29840 -14.11882 -13.68553 -13.32148 -13.11360 -12.70946 -12.64171 -12.48609 -12.31681 -12.24300 -12.02596 -11.78076 -11.43961 -11.06956 -10.84478 -10.59107 -10.26980 -10.24795 -10.17256 -9.50036 -9.31957 -9.15452 -9.03142 -8.77132 -8.49492 -6.91099 -6.14213 -4.22902 0.91623 1.14971 2.85294 3.24012 3.30443 3.32875 3.41186 3.74287 4.10114 4.34824 4.45280 4.67402 4.79091 4.94428 4.98666 5.06181 5.18235 5.19344 5.27504 5.36116 5.43168 5.48050 5.55533 5.61159 5.83366 5.99821 6.05518 6.08988 6.24209 6.46992 6.74101 6.91929 7.00099 7.14095 7.25188 7.56547 7.75846 7.83552 8.10299 8.20498 8.27379 8.83642 9.26935 9.43750 10.91776 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.818671 B = 8935.497438 C = 9350.369016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.134 3.866 4 C -0.173 4.173 5 C -0.100 4.100 6 C 0.113 3.887 7 N -0.459 5.459 8 C 0.218 3.782 9 C -0.034 4.034 10 N -0.144 5.144 11 N -0.614 5.614 12 C 0.295 3.705 13 H 0.045 0.955 14 C -0.150 4.150 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.148 4.148 24 C -0.107 4.107 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.369 0.631 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.091 0.909 37 H 0.265 0.735 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -16.688 8.322 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.083 3.917 4 C -0.177 4.177 5 C -0.157 4.157 6 C -0.046 4.046 7 N -0.169 5.169 8 C 0.080 3.920 9 C -0.241 4.241 10 N 0.039 4.961 11 N -0.351 5.351 12 C 0.193 3.807 13 H 0.063 0.937 14 C -0.209 4.209 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.205 0.795 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.084 -14.933 8.936 20.633 hybrid contribution -0.342 -1.163 -1.762 2.138 sum -11.426 -16.096 7.174 21.003 Atomic orbital electron populations 1.22990 0.78675 1.03233 1.00968 1.85934 1.19917 1.24555 1.94258 1.18436 0.96259 0.85709 0.91263 1.21205 1.03949 0.96793 0.95756 1.20561 1.01919 1.00311 0.92918 1.22586 0.94214 0.91271 0.96505 1.68026 1.16915 1.34535 0.97410 1.19163 0.92589 0.89386 0.90870 1.23161 1.10665 0.96021 0.94251 1.74215 1.01469 1.06352 1.14045 1.49334 1.64004 1.21724 1.00003 1.18616 0.89151 0.74925 0.98044 0.93680 1.22199 0.98276 1.03500 0.96967 1.21222 1.26536 1.02368 1.07014 0.92149 1.24860 0.96554 0.95389 0.96805 1.69893 1.41079 1.06643 1.34615 0.86413 0.79933 0.78156 0.82410 1.20527 1.20986 1.19859 1.21017 1.02856 0.95345 0.96113 1.20653 1.01971 1.00620 0.93154 0.93409 0.93291 0.88677 0.91015 0.91771 0.91372 0.82574 0.86849 0.79533 0.95513 0.96700 0.89053 0.92510 0.91274 0.90643 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.81 101.05 1.09 1.36 16 2 O -0.33 -3.65 8.88 -18.96 -0.17 -3.82 16 3 C 0.13 1.72 5.72 -38.87 -0.22 1.50 16 4 C -0.17 -2.11 5.92 -104.24 -0.62 -2.72 16 5 C -0.10 -0.87 9.83 36.01 0.35 -0.52 16 6 C 0.11 1.56 10.83 -17.63 -0.19 1.37 16 7 N -0.46 -8.09 10.06 -9.99 -0.10 -8.19 16 8 C 0.22 3.65 6.74 -83.16 -0.56 3.09 16 9 C -0.03 -0.62 10.19 -14.69 -0.15 -0.77 16 10 N -0.14 -3.14 11.22 32.14 0.36 -2.77 16 11 N -0.61 -13.86 6.10 -5.89 -0.04 -13.90 16 12 C 0.29 7.64 3.23 -69.09 -0.22 7.41 16 13 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.15 -3.75 9.29 37.15 0.35 -3.41 16 15 C -0.53 -14.38 8.74 -34.44 -0.30 -14.68 16 16 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.88 -24.83 11.32 55.43 0.63 -24.21 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.15 -2.05 5.95 -103.90 -0.62 -2.66 16 24 C -0.11 -1.17 9.33 36.01 0.34 -0.83 16 25 H 0.05 0.33 7.33 -51.93 -0.38 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.51 6.51 -51.93 -0.34 0.17 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.11 1.72 6.31 -52.49 -0.33 1.39 16 33 H 0.37 7.53 8.58 -182.60 -1.57 5.97 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 40 H 0.07 0.72 7.61 -51.93 -0.40 0.33 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -30.86 338.31 -7.09 -37.94 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.00 Total: 3.17 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.85 Total: -9.13 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.85 Total: -49.07 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.17 Total: -3.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.86 -7.09 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.389 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds