Wall clock time and date at job start Mon Mar 30 2020 02:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 116.99862 * 2 1 4 4 C 1.39464 * 120.78570 * 90.00294 * 3 2 1 5 5 C 1.50703 * 120.31257 * 0.02562 * 4 3 2 6 6 C 1.38019 * 119.37279 * 180.29515 * 4 3 2 7 7 N 1.31831 * 120.99206 * 359.43041 * 6 4 3 8 8 C 1.33029 * 121.71050 * 0.58475 * 7 6 4 9 9 C 1.47382 * 119.73749 * 179.73150 * 8 7 6 10 10 N 1.29807 * 120.00014 * 359.97061 * 9 8 7 11 11 N 1.40099 * 119.99973 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00090 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.46736 * 30.00793 * 12 11 10 14 14 C 1.52992 * 109.47093 * 270.00323 * 12 11 10 15 15 C 1.50699 * 109.47058 * 150.00390 * 12 11 10 16 16 H 1.08004 * 120.00241 * 0.02562 * 15 12 11 17 17 C 1.37876 * 120.00125 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99832 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00015 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46555 * 90.00573 * 19 17 15 21 21 H 1.48498 * 109.47067 * 209.99722 * 19 17 15 22 22 H 1.48493 * 109.47481 * 330.00333 * 19 17 15 23 23 C 1.38914 * 120.78883 * 270.02433 * 3 2 1 24 24 C 1.50701 * 120.50916 * 359.95546 * 23 3 2 25 25 H 1.09001 * 109.47210 * 299.99714 * 1 2 3 26 26 H 1.08996 * 109.47588 * 60.00041 * 1 2 3 27 27 H 1.09003 * 109.47246 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 90.00126 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00226 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00207 * 5 4 3 31 31 H 1.07997 * 119.50430 * 179.72221 * 6 4 3 32 32 H 1.08000 * 120.00100 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99929 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.47713 * 299.99871 * 14 12 11 35 35 H 1.09005 * 109.47622 * 60.00212 * 14 12 11 36 36 H 1.09006 * 109.47279 * 179.97438 * 14 12 11 37 37 H 0.96998 * 119.99887 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47225 * 90.00506 * 24 23 3 39 39 H 1.09003 * 109.46527 * 210.00032 * 24 23 3 40 40 H 1.08993 * 109.47206 * 329.99980 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 2.3693 1.8455 1.1981 5 6 2.0393 1.1963 2.5174 6 6 2.9902 3.0778 1.1641 7 7 3.2903 3.6552 0.0176 8 6 3.0002 3.0859 -1.1491 9 6 3.3503 3.7731 -2.4050 10 7 3.9390 4.9295 -2.3698 11 7 4.2713 5.5830 -3.5637 12 6 4.9352 6.8883 -3.5240 13 1 5.5470 6.9575 -2.6245 14 6 3.8806 7.9966 -3.5101 15 6 5.8111 7.0436 -4.7404 16 1 5.8673 6.2496 -5.4703 17 6 6.5407 8.1994 -4.9215 18 7 6.4727 9.1661 -4.0325 19 14 7.6270 8.3916 -6.4290 20 1 6.8430 9.0096 -7.5284 21 1 8.7846 9.2607 -6.0975 22 1 8.1169 7.0575 -6.8596 23 6 2.3676 1.8434 -1.1934 24 6 2.0394 1.1983 -2.5152 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 2.8756 0.5736 2.8353 29 1 1.1482 0.5785 2.4055 30 1 1.8553 1.9672 3.2658 31 1 3.2381 3.5742 2.0906 32 1 3.1171 3.3146 -3.3547 33 1 4.0612 5.1715 -4.4166 34 1 3.2688 7.9274 -4.4095 35 1 3.2470 7.8844 -2.6302 36 1 4.3745 8.9679 -3.4801 37 1 6.9863 9.9791 -4.1597 38 1 1.0444 1.5087 -2.8339 39 1 2.7723 1.5057 -3.2613 40 1 2.0644 0.1141 -2.4065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872358511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:54 Heat of formation + Delta-G solvation = 12.241907 kcal Electronic energy + Delta-G solvation = -20717.880403 eV Core-core repulsion = 17533.085661 eV Total energy + Delta-G solvation = -3184.794742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68970 -39.10577 -38.04170 -36.05374 -34.73483 -33.57602 -32.92577 -29.86058 -28.96348 -27.71886 -27.29833 -27.09140 -24.54489 -22.83617 -22.18228 -21.45523 -19.18655 -18.74316 -18.08496 -17.10061 -16.84252 -16.75237 -15.95402 -15.49899 -15.31819 -15.14294 -15.00715 -14.53482 -14.41322 -14.19019 -14.02140 -13.52747 -13.36111 -13.23989 -13.11649 -12.93334 -12.72613 -12.70017 -12.63982 -12.43559 -12.21580 -12.09804 -11.17881 -11.05712 -10.83247 -10.59867 -10.43086 -10.16187 -9.95216 -8.52046 -8.18302 -6.36041 -0.23424 0.13150 1.42814 1.43976 1.53712 1.55200 2.07111 2.43257 2.58407 2.96317 3.10687 3.32073 3.71745 3.83515 3.94404 4.27662 4.35967 4.40558 4.43338 4.48558 4.59465 4.68469 4.74552 4.78012 4.80990 4.85445 4.96603 5.03166 5.09396 5.11036 5.23790 5.25687 5.28647 5.50413 5.60558 5.74536 5.84530 6.13806 6.36963 6.38638 6.81367 7.06464 7.35301 7.73285 8.87115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.003133 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.818671 B = 8935.497438 C = 9350.369016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.129 3.871 4 C -0.156 4.156 5 C -0.099 4.099 6 C 0.096 3.904 7 N -0.499 5.499 8 C 0.174 3.826 9 C 0.008 3.992 10 N -0.205 5.205 11 N -0.633 5.633 12 C 0.306 3.694 13 H -0.001 1.001 14 C -0.135 4.135 15 C -0.549 4.549 16 H 0.064 0.936 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.973 3.027 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.138 4.138 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.141 0.859 33 H 0.376 0.624 34 H 0.033 0.967 35 H 0.015 0.985 36 H 0.070 0.930 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 -19.307 8.436 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.078 3.922 4 C -0.160 4.160 5 C -0.156 4.156 6 C -0.062 4.062 7 N -0.209 5.209 8 C 0.037 3.963 9 C -0.201 4.201 10 N -0.017 5.017 11 N -0.370 5.370 12 C 0.202 3.798 13 H 0.017 0.983 14 C -0.195 4.195 15 C -0.588 4.588 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.143 4.143 24 C -0.164 4.164 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.195 0.805 32 H 0.158 0.842 33 H 0.213 0.787 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.437 -17.566 9.053 23.350 hybrid contribution -0.117 -0.669 -1.548 1.690 sum -12.554 -18.235 7.505 23.376 Atomic orbital electron populations 1.23283 0.76553 1.05230 1.01548 1.85935 1.21825 1.23208 1.94236 1.18563 0.96322 0.86242 0.91081 1.21601 1.01259 0.95740 0.97369 1.20678 1.02719 1.00954 0.91278 1.22983 0.94736 0.92307 0.96170 1.67906 1.18021 1.36272 0.98740 1.19202 0.95738 0.91058 0.90263 1.23814 1.05802 0.94251 0.96243 1.74240 1.05165 1.08573 1.13756 1.48720 1.66290 1.21377 1.00621 1.18160 0.88912 0.77001 0.95686 0.98316 1.22010 0.97945 1.02269 0.97241 1.21517 1.27117 1.02724 1.07414 0.91796 1.25747 0.97786 0.94964 0.99741 1.70029 1.41834 1.07104 1.36369 0.85331 0.77979 0.78182 0.78748 1.19517 1.20741 1.19313 1.21259 1.00988 0.94075 0.98007 1.20744 1.02886 1.01161 0.91600 0.92601 0.93003 0.86039 0.90062 0.90540 0.89516 0.80531 0.84195 0.78690 0.94761 0.96631 0.91134 0.92352 0.89514 0.90609 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 113.37 1.23 1.54 16 2 O -0.34 -6.30 8.88 -90.75 -0.81 -7.10 16 3 C 0.13 3.00 5.72 22.73 0.13 3.13 16 4 C -0.16 -3.44 5.92 -19.62 -0.12 -3.56 16 5 C -0.10 -1.39 9.83 71.24 0.70 -0.69 16 6 C 0.10 2.58 10.83 84.64 0.92 3.50 16 7 N -0.50 -17.74 10.06 -185.52 -1.87 -19.61 16 8 C 0.17 5.80 6.74 41.68 0.28 6.09 16 9 C 0.01 0.30 10.19 87.40 0.89 1.19 16 10 N -0.20 -9.24 11.22 -52.22 -0.59 -9.83 16 11 N -0.63 -29.69 6.10 -172.54 -1.05 -30.74 16 12 C 0.31 16.65 3.23 44.24 0.14 16.80 16 13 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C -0.14 -7.05 9.29 71.98 0.67 -6.38 16 15 C -0.55 -30.45 8.74 25.60 0.22 -30.22 16 16 H 0.06 3.41 7.79 -2.91 -0.02 3.38 16 17 C 0.02 0.99 5.30 84.65 0.45 1.43 16 18 N -0.92 -52.88 11.32 21.45 0.24 -52.63 16 19 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 C -0.14 -3.57 5.95 -19.40 -0.12 -3.69 16 24 C -0.11 -2.06 9.33 71.24 0.66 -1.39 16 25 H 0.06 0.56 7.33 -2.39 -0.02 0.54 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 0.92 6.51 -2.39 -0.02 0.90 16 30 H 0.09 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.14 4.11 6.31 -2.91 -0.02 4.09 16 33 H 0.38 15.78 8.58 -213.32 -1.83 13.95 16 34 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 3.94 6.07 -2.38 -0.01 3.93 16 37 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.45 6.33 -2.39 -0.02 1.44 16 40 H 0.08 1.43 7.61 -2.39 -0.02 1.41 16 Total: -1.00 -69.52 338.31 3.24 -66.28 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.78 Total: 20.84 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 6.06 Total: -12.26 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.26 Total: -112.81 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.81 Total: -7.10 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.52 3.24 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.521 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds