Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32156 * 119.99475 * 2 1 4 4 C 1.32126 * 119.99330 * 180.02562 * 3 2 1 5 5 C 1.38388 * 120.00223 * 0.02562 * 4 3 2 6 6 N 1.32128 * 119.99594 * 359.74351 * 5 4 3 7 7 C 1.32150 * 119.99798 * 0.50875 * 6 5 4 8 8 C 1.50700 * 119.99618 * 179.76835 * 7 6 5 9 9 H 1.09001 * 109.47042 * 164.72540 * 8 7 6 10 10 C 1.52997 * 109.47132 * 284.72322 * 8 7 6 11 11 N 1.46499 * 109.47343 * 44.72666 * 8 7 6 12 12 C 1.34777 * 120.00199 * 155.00212 * 11 8 7 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 8 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 8 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.52994 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47076 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99591 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99869 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08997 * 109.47308 * 269.97585 * 1 2 3 26 26 H 1.09002 * 109.47305 * 29.97841 * 1 2 3 27 27 H 1.09006 * 109.46809 * 149.97503 * 1 2 3 28 28 H 1.08005 * 119.99478 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.00454 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47268 * 60.00213 * 10 8 7 31 31 H 1.09006 * 109.47495 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47320 * 300.00323 * 10 8 7 33 33 H 0.97000 * 119.99484 * 334.99309 * 11 8 7 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 1.08998 * 109.46965 * 299.99512 * 16 15 14 39 39 H 1.09003 * 109.47184 * 60.00331 * 16 15 14 40 40 H 0.96996 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1445 -0.0005 5 6 4.1809 -0.0539 -0.0016 6 7 3.5202 -1.1982 0.0030 7 6 2.1987 -1.1981 -0.0015 8 6 1.4452 -2.5032 -0.0015 9 1 0.4041 -2.3216 0.2653 10 6 1.5125 -3.1309 -1.3952 11 7 2.0475 -3.4149 0.9743 12 6 1.3080 -4.3989 1.5231 13 8 0.1437 -4.5294 1.2094 14 6 1.9259 -5.3329 2.5316 15 6 0.8778 -6.3447 2.9989 16 6 1.5053 -7.2932 4.0222 17 6 0.4726 -8.2895 4.4830 18 1 -0.5307 -8.2502 4.0854 19 6 0.8092 -9.2517 5.4115 20 7 -0.0918 -10.1214 5.8132 21 14 2.5448 -9.3200 6.0987 22 1 2.6295 -8.4718 7.3146 23 1 2.8836 -10.7228 6.4490 24 1 3.5011 -8.8198 5.0786 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 4.0289 2.0799 -0.0001 29 1 5.2609 -0.0540 -0.0024 30 1 2.5535 -3.3125 -1.6620 31 1 0.9671 -4.0747 -1.3954 32 1 1.0643 -2.4525 -2.1213 33 1 2.9786 -3.3103 1.2253 34 1 2.7618 -5.8612 2.0730 35 1 2.2837 -4.7592 3.3865 36 1 0.0419 -5.8163 3.4575 37 1 0.5199 -6.9183 2.1439 38 1 2.3409 -7.8216 3.5632 39 1 1.8634 -6.7199 4.8773 40 1 0.1447 -10.7981 6.4666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874655904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = -9.332016 kcal Electronic energy + Delta-G solvation = -20697.435478 eV Core-core repulsion = 17511.705221 eV Total energy + Delta-G solvation = -3185.730257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72742 -39.57871 -36.22921 -34.87767 -34.24977 -33.00778 -32.05259 -30.41662 -28.46926 -28.18382 -25.59388 -23.96586 -23.25954 -21.82486 -20.42505 -19.85084 -18.16662 -17.58102 -16.65601 -16.45196 -16.11671 -15.63966 -15.36054 -15.17224 -14.24852 -14.12354 -13.88938 -13.43905 -13.29358 -13.20143 -12.80382 -12.74480 -12.64114 -12.33676 -11.98290 -11.93518 -11.62981 -11.43975 -11.36962 -10.95539 -10.76403 -9.99393 -9.83984 -9.69158 -9.62177 -9.55804 -9.33468 -9.10832 -9.05592 -8.49185 -5.98948 -3.96559 0.29674 0.69713 2.84236 3.06376 3.32938 3.33245 3.40263 3.43417 3.51749 3.71684 4.05941 4.20953 4.48922 4.65385 4.75222 4.87586 4.95879 5.01791 5.13546 5.20630 5.27687 5.34503 5.42630 5.57649 5.60417 5.62472 5.68686 5.87923 6.04204 6.13646 6.39595 6.58903 6.71690 6.85259 6.95073 7.34854 7.40069 7.48339 7.56786 7.84781 8.38404 8.61241 9.07920 9.63267 11.14798 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.003028 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.416186 B = 9243.479479 C = 9646.441426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.095 3.905 3 N -0.438 5.438 4 C 0.052 3.948 5 C 0.045 3.955 6 N -0.427 5.427 7 C 0.074 3.926 8 C 0.195 3.805 9 H 0.110 0.890 10 C -0.159 4.159 11 N -0.729 5.729 12 C 0.515 3.485 13 O -0.535 6.535 14 C -0.141 4.141 15 C -0.087 4.087 16 C -0.015 4.015 17 C -0.518 4.518 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.405 0.595 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 23.860 -14.373 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 N -0.153 5.153 4 C -0.108 4.108 5 C -0.115 4.115 6 N -0.142 5.142 7 C -0.068 4.068 8 C 0.088 3.912 9 H 0.128 0.872 10 C -0.217 4.217 11 N -0.383 5.383 12 C 0.303 3.697 13 O -0.410 6.410 14 C -0.181 4.181 15 C -0.125 4.125 16 C -0.052 4.052 17 C -0.556 4.556 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.240 0.760 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.349 23.597 -14.471 28.912 hybrid contribution 1.654 0.100 0.557 1.748 sum 10.003 23.697 -13.914 29.244 Atomic orbital electron populations 1.20866 0.87437 1.04363 1.04225 1.22113 0.98624 0.88679 0.95166 1.68355 1.09021 1.28872 1.09037 1.23817 0.90776 1.00021 0.96146 1.23775 1.01992 0.88605 0.97101 1.68141 1.07930 1.30130 1.07994 1.22172 0.90922 0.96211 0.97464 1.19768 0.96930 0.83840 0.90637 0.87214 1.22156 1.03079 1.01905 0.94585 1.46139 1.15438 1.32257 1.44471 1.21207 0.86577 0.80521 0.81389 1.90686 1.16877 1.71393 1.62075 1.21871 1.01424 0.97512 0.97282 1.21263 0.96186 0.95332 0.99692 1.19611 0.96855 0.94771 0.93989 1.21170 0.98270 1.12495 1.23681 0.90916 1.25051 0.97066 0.95335 0.96206 1.69921 1.33972 1.18225 1.32305 0.86762 0.85669 0.77095 0.79635 1.20374 1.21464 1.19023 0.89357 0.89732 0.89557 0.81191 0.81085 0.91743 0.90615 0.91840 0.75984 0.89259 0.89426 0.92091 0.92015 0.96646 0.97130 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.42 36.01 0.34 -0.49 16 2 C 0.09 0.90 6.78 -82.41 -0.56 0.35 16 3 N -0.44 -4.17 10.42 -9.29 -0.10 -4.27 16 4 C 0.05 0.37 11.23 -17.37 -0.19 0.18 16 5 C 0.05 0.32 11.23 -17.37 -0.19 0.13 16 6 N -0.43 -4.11 9.74 -9.29 -0.09 -4.20 16 7 C 0.07 0.74 5.71 -82.42 -0.47 0.27 16 8 C 0.19 2.10 2.45 -69.08 -0.17 1.93 16 9 H 0.11 1.23 5.36 -51.93 -0.28 0.95 16 10 C -0.16 -1.59 9.47 37.16 0.35 -1.24 16 11 N -0.73 -8.76 5.06 -54.93 -0.28 -9.04 16 12 C 0.52 7.92 7.79 -10.98 -0.09 7.83 16 13 O -0.53 -10.05 15.64 5.55 0.09 -9.96 16 14 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 15 C -0.09 -1.80 4.44 -26.74 -0.12 -1.92 16 16 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 17 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 18 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 21 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.58 6.39 -51.93 -0.33 0.25 16 28 H 0.17 0.62 8.06 -52.48 -0.42 0.19 16 29 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.41 4.30 8.06 -40.82 -0.33 3.97 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -35.20 336.62 -6.94 -42.15 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.94 Total: 0.30 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.80 Total: -9.55 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.31 Total: -45.24 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.20 -6.94 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874655904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.815 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds