Wall clock time and date at job start Mon Mar 30 2020 02:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32156 * 119.99475 * 2 1 4 4 C 1.32126 * 119.99330 * 180.02562 * 3 2 1 5 5 C 1.38388 * 120.00223 * 0.02562 * 4 3 2 6 6 N 1.32128 * 119.99594 * 359.74351 * 5 4 3 7 7 C 1.32150 * 119.99798 * 0.50875 * 6 5 4 8 8 C 1.50700 * 119.99618 * 179.76835 * 7 6 5 9 9 H 1.09001 * 109.47042 * 164.72540 * 8 7 6 10 10 C 1.52997 * 109.47132 * 284.72322 * 8 7 6 11 11 N 1.46499 * 109.47343 * 44.72666 * 8 7 6 12 12 C 1.34777 * 120.00199 * 155.00212 * 11 8 7 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 8 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 8 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.52994 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47076 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99591 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99869 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00085 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47180 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46903 * 210.00050 * 21 19 17 24 24 H 1.48498 * 109.47152 * 329.99815 * 21 19 17 25 25 H 1.08997 * 109.47308 * 269.97585 * 1 2 3 26 26 H 1.09002 * 109.47305 * 29.97841 * 1 2 3 27 27 H 1.09006 * 109.46809 * 149.97503 * 1 2 3 28 28 H 1.08005 * 119.99478 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.00454 * 179.97438 * 5 4 3 30 30 H 1.08993 * 109.47268 * 60.00213 * 10 8 7 31 31 H 1.09006 * 109.47495 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47320 * 300.00323 * 10 8 7 33 33 H 0.97000 * 119.99484 * 334.99309 * 11 8 7 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 1.08998 * 109.46965 * 299.99512 * 16 15 14 39 39 H 1.09003 * 109.47184 * 60.00331 * 16 15 14 40 40 H 0.96996 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1445 -0.0005 5 6 4.1809 -0.0539 -0.0016 6 7 3.5202 -1.1982 0.0030 7 6 2.1987 -1.1981 -0.0015 8 6 1.4452 -2.5032 -0.0015 9 1 0.4041 -2.3216 0.2653 10 6 1.5125 -3.1309 -1.3952 11 7 2.0475 -3.4149 0.9743 12 6 1.3080 -4.3989 1.5231 13 8 0.1437 -4.5294 1.2094 14 6 1.9259 -5.3329 2.5316 15 6 0.8778 -6.3447 2.9989 16 6 1.5053 -7.2932 4.0222 17 6 0.4726 -8.2895 4.4830 18 1 -0.5307 -8.2502 4.0854 19 6 0.8092 -9.2517 5.4115 20 7 -0.0918 -10.1214 5.8132 21 14 2.5448 -9.3200 6.0987 22 1 2.6295 -8.4718 7.3146 23 1 2.8836 -10.7228 6.4490 24 1 3.5011 -8.8198 5.0786 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 4.0289 2.0799 -0.0001 29 1 5.2609 -0.0540 -0.0024 30 1 2.5535 -3.3125 -1.6620 31 1 0.9671 -4.0747 -1.3954 32 1 1.0643 -2.4525 -2.1213 33 1 2.9786 -3.3103 1.2253 34 1 2.7618 -5.8612 2.0730 35 1 2.2837 -4.7592 3.3865 36 1 0.0419 -5.8163 3.4575 37 1 0.5199 -6.9183 2.1439 38 1 2.3409 -7.8216 3.5632 39 1 1.8634 -6.7199 4.8773 40 1 0.1447 -10.7981 6.4666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874655904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:03 Heat of formation + Delta-G solvation = -35.043129 kcal Electronic energy + Delta-G solvation = -20698.550395 eV Core-core repulsion = 17511.705221 eV Total energy + Delta-G solvation = -3186.845175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.37104 -40.74481 -37.19917 -36.06666 -35.48730 -34.18897 -33.75497 -31.42594 -29.84565 -29.04721 -26.40661 -25.57205 -23.93287 -22.89656 -21.84051 -21.26538 -19.03081 -18.86365 -18.29928 -17.35013 -16.92436 -16.75138 -16.33398 -16.15269 -15.92182 -15.22802 -14.90177 -14.77240 -14.66051 -14.07072 -13.83041 -13.78076 -13.70965 -13.38212 -13.18154 -13.12738 -12.68939 -12.61646 -12.48904 -12.19624 -12.08928 -11.78065 -11.72218 -11.48247 -11.31519 -10.86047 -10.74137 -10.35929 -10.10249 -9.93949 -8.26850 -6.32188 -0.30470 0.07824 1.38942 1.42262 1.54435 1.64868 2.12382 2.39745 2.65077 2.88094 3.08303 3.14941 3.46340 3.56997 3.88028 4.03254 4.14024 4.18565 4.24686 4.28592 4.32649 4.42321 4.61458 4.62947 4.70701 4.76792 4.86959 4.92680 4.97988 5.04274 5.06143 5.13086 5.40416 5.41700 5.58520 5.61778 5.69188 6.24812 6.31975 6.53122 6.74692 6.76601 7.25001 7.32204 8.90821 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.003028 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.416186 B = 9243.479479 C = 9646.441426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.082 3.918 3 N -0.460 5.460 4 C 0.058 3.942 5 C 0.048 3.952 6 N -0.444 5.444 7 C 0.059 3.941 8 C 0.194 3.806 9 H 0.102 0.898 10 C -0.152 4.152 11 N -0.712 5.712 12 C 0.517 3.483 13 O -0.578 6.578 14 C -0.132 4.132 15 C -0.079 4.079 16 C -0.010 4.010 17 C -0.539 4.539 18 H 0.021 0.979 19 C -0.003 4.003 20 N -0.957 5.957 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.237 1.237 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.206 0.794 29 H 0.207 0.793 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 25.950 -14.528 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.057 4.057 3 N -0.176 5.176 4 C -0.103 4.103 5 C -0.113 4.113 6 N -0.159 5.159 7 C -0.081 4.081 8 C 0.088 3.912 9 H 0.120 0.880 10 C -0.210 4.210 11 N -0.365 5.365 12 C 0.305 3.695 13 O -0.457 6.457 14 C -0.171 4.171 15 C -0.118 4.118 16 C -0.047 4.047 17 C -0.577 4.577 18 H 0.039 0.961 19 C -0.199 4.199 20 N -0.598 5.598 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.160 1.160 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.223 0.777 29 H 0.224 0.776 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.176 25.717 -14.652 32.005 hybrid contribution 0.429 -0.472 0.556 0.846 sum 12.605 25.245 -14.097 31.542 Atomic orbital electron populations 1.20890 0.86836 1.04872 1.04265 1.22268 0.99289 0.88705 0.95451 1.68405 1.10414 1.28845 1.09906 1.24465 0.90117 1.01626 0.94082 1.24388 1.03536 0.87813 0.95548 1.68118 1.07683 1.31556 1.08515 1.21913 0.91340 0.95559 0.99256 1.19792 0.96760 0.84272 0.90418 0.88028 1.22077 1.02969 1.01284 0.94690 1.45954 1.15568 1.31184 1.43789 1.21115 0.86047 0.81003 0.81322 1.90681 1.18737 1.72698 1.63619 1.21721 1.00121 0.96754 0.98533 1.21035 0.97021 0.95740 0.97979 1.19553 0.95669 0.94235 0.95276 1.21564 0.97672 1.14448 1.23994 0.96063 1.26181 1.02766 0.94512 0.96441 1.70102 1.37024 1.19324 1.33341 0.85510 0.79094 0.77493 0.79620 1.18966 1.21208 1.15953 0.89529 0.89004 0.89270 0.77737 0.77623 0.91548 0.92518 0.90222 0.74816 0.86656 0.86834 0.94305 0.94241 0.95193 0.95404 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.42 71.24 0.67 -0.96 16 2 C 0.08 1.48 6.78 42.53 0.29 1.77 16 3 N -0.46 -7.90 10.42 -183.29 -1.91 -9.81 16 4 C 0.06 0.64 11.23 84.68 0.95 1.59 16 5 C 0.05 0.52 11.23 84.68 0.95 1.47 16 6 N -0.44 -7.45 9.74 -183.30 -1.78 -9.24 16 7 C 0.06 1.10 5.71 42.54 0.24 1.35 16 8 C 0.19 4.04 2.45 44.24 0.11 4.15 16 9 H 0.10 2.30 5.36 -2.39 -0.01 2.29 16 10 C -0.15 -2.95 9.47 71.98 0.68 -2.27 16 11 N -0.71 -16.13 5.06 -446.10 -2.26 -18.38 16 12 C 0.52 15.51 7.79 87.66 0.68 16.19 16 13 O -0.58 -22.27 15.64 -3.04 -0.05 -22.31 16 14 C -0.13 -3.85 5.70 29.85 0.17 -3.68 16 15 C -0.08 -3.32 4.44 30.59 0.14 -3.18 16 16 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 17 C -0.54 -32.53 9.66 25.60 0.25 -32.29 16 18 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 19 C 0.00 -0.19 5.47 84.65 0.46 0.27 16 20 N -0.96 -62.07 13.96 21.45 0.30 -61.77 16 21 Si 0.96 44.24 27.47 68.60 1.88 46.13 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.20 6.39 -2.38 -0.02 1.19 16 28 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.41 7.80 8.06 -92.71 -0.75 7.06 16 34 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 36 H 0.04 1.75 8.10 -2.38 -0.02 1.73 16 37 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 39 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -79.66 336.62 2.14 -77.52 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.24 Total: 13.81 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.71 Total: -15.94 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -5.65 Total: -99.20 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -79.66 2.14 -77.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874655904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.479 kcal (2) G-P(sol) polarization free energy of solvation -79.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds