Wall clock time and date at job start Mon Mar 30 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32152 * 119.99939 * 2 1 4 4 C 1.32122 * 120.00026 * 180.27798 * 3 2 1 5 5 C 1.38392 * 119.99733 * 359.73587 * 4 3 2 6 6 N 1.32127 * 119.99856 * 0.02562 * 5 4 3 7 7 C 1.32156 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99644 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47260 * 194.66887 * 8 7 6 10 10 C 1.52997 * 109.47368 * 74.66892 * 8 7 6 11 11 N 1.46500 * 109.47342 * 314.66903 * 8 7 6 12 12 C 1.34777 * 120.00217 * 205.00419 * 11 8 7 13 13 O 1.21279 * 119.99637 * 359.97438 * 12 11 8 14 14 C 1.50697 * 120.00186 * 180.02562 * 12 11 8 15 15 C 1.52996 * 109.47502 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47395 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47154 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00360 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99963 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46920 * 120.00018 * 21 19 17 24 24 H 1.48501 * 109.47138 * 239.99577 * 21 19 17 25 25 H 1.09005 * 109.47220 * 264.36296 * 1 2 3 26 26 H 1.09000 * 109.47660 * 24.35917 * 1 2 3 27 27 H 1.09000 * 109.47262 * 144.36780 * 1 2 3 28 28 H 1.07999 * 120.00417 * 179.71810 * 4 3 2 29 29 H 1.08001 * 120.00256 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47804 * 179.97438 * 10 8 7 31 31 H 1.08998 * 109.47280 * 299.99697 * 10 8 7 32 32 H 1.09000 * 109.47070 * 59.99585 * 10 8 7 33 33 H 0.96999 * 119.99613 * 24.99734 * 11 8 7 34 34 H 1.09010 * 109.46883 * 299.99567 * 14 12 11 35 35 H 1.09001 * 109.47352 * 59.99060 * 14 12 11 36 36 H 1.09001 * 109.47142 * 300.00360 * 15 14 12 37 37 H 1.09006 * 109.46995 * 59.99522 * 15 14 12 38 38 H 1.09001 * 109.47554 * 299.99932 * 16 15 14 39 39 H 1.09006 * 109.47105 * 59.99999 * 16 15 14 40 40 H 0.97000 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4889 1.1445 -0.0056 5 6 4.1809 -0.0540 -0.0058 6 7 3.5202 -1.1982 -0.0011 7 6 2.1986 -1.1981 0.0045 8 6 1.4451 -2.5031 0.0093 9 1 0.4013 -2.3210 -0.2468 10 6 1.5262 -3.1338 1.4009 11 7 2.0377 -3.4129 -0.9743 12 6 1.2926 -4.3958 -1.5178 13 8 0.1318 -4.5273 -1.1922 14 6 1.9023 -5.3319 -2.5292 15 6 0.8512 -6.3465 -2.9838 16 6 1.4700 -7.2965 -4.0110 17 6 0.4349 -8.2961 -4.4583 18 1 -0.5646 -8.2575 -4.0509 19 6 0.7637 -9.2602 -5.3876 20 7 1.9809 -9.3077 -5.8832 21 14 -0.5197 -10.4989 -5.9425 22 1 -1.8010 -10.2324 -5.2405 23 1 -0.7242 -10.3767 -7.4083 24 1 -0.0544 -11.8718 -5.6204 25 1 -0.3634 -0.1009 1.0227 26 1 -0.3634 0.9361 -0.4238 27 1 -0.3634 -0.8352 -0.5987 28 1 4.0290 2.0798 -0.0102 29 1 5.2609 -0.0541 -0.0108 30 1 0.9808 -4.0775 1.4046 31 1 2.5699 -3.3160 1.6570 32 1 1.0853 -2.4569 2.1328 33 1 2.9662 -3.3078 -1.2344 34 1 2.2518 -4.7603 -3.3890 35 1 2.7430 -5.8581 -2.0768 36 1 0.5021 -6.9180 -2.1238 37 1 0.0103 -5.8205 -3.4360 38 1 1.8188 -6.7247 -4.8710 39 1 2.3111 -7.8224 -3.5591 40 1 2.2121 -9.9856 -6.5373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874655905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:06 Heat of formation + Delta-G solvation = -12.815284 kcal Electronic energy + Delta-G solvation = -20647.027589 eV Core-core repulsion = 17461.146286 eV Total energy + Delta-G solvation = -3185.881303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68869 -39.51121 -36.16744 -34.83973 -34.13383 -32.95646 -31.99748 -30.32250 -28.42783 -27.69629 -25.55039 -23.98557 -23.24691 -21.89418 -20.47848 -19.79423 -18.12687 -17.51372 -16.55490 -16.09272 -16.04579 -15.62319 -15.26404 -15.12082 -14.40994 -14.07712 -13.80961 -13.42034 -13.27382 -13.20045 -12.73943 -12.70059 -12.32710 -12.24652 -11.93608 -11.75688 -11.43430 -11.37766 -11.22027 -10.80237 -10.57518 -10.49988 -9.75306 -9.65870 -9.51867 -9.49253 -9.22319 -9.01482 -8.96915 -8.30370 -5.95821 -3.97029 0.33549 0.73272 2.91125 3.12225 3.34982 3.37570 3.42257 3.48092 3.55851 3.75016 4.09802 4.24042 4.51071 4.69484 4.77693 4.91348 5.00593 5.03347 5.20560 5.22700 5.32322 5.40343 5.47811 5.61824 5.70301 5.75063 5.78231 5.92653 6.08118 6.28975 6.45663 6.75764 6.88974 6.96178 7.19121 7.38675 7.62918 7.73929 7.86537 8.05254 8.44895 8.49425 9.10452 9.66867 11.15765 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.002826 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.237159 B = 9905.412941 C =10181.749271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.052 3.948 5 C 0.046 3.954 6 N -0.427 5.427 7 C 0.074 3.926 8 C 0.194 3.806 9 H 0.110 0.890 10 C -0.157 4.157 11 N -0.730 5.730 12 C 0.515 3.485 13 O -0.538 6.538 14 C -0.138 4.138 15 C -0.094 4.094 16 C 0.020 3.980 17 C -0.516 4.516 18 H 0.057 0.943 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 21.792 14.322 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.047 4.047 3 N -0.153 5.153 4 C -0.108 4.108 5 C -0.114 4.114 6 N -0.141 5.141 7 C -0.067 4.067 8 C 0.088 3.912 9 H 0.128 0.872 10 C -0.216 4.216 11 N -0.384 5.384 12 C 0.304 3.696 13 O -0.414 6.414 14 C -0.178 4.178 15 C -0.132 4.132 16 C -0.018 4.018 17 C -0.555 4.555 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.670 21.587 14.433 26.226 hybrid contribution 0.209 -0.473 -0.464 0.695 sum 3.880 21.115 13.969 25.613 Atomic orbital electron populations 1.20874 0.87491 1.04632 1.03892 1.22094 0.98602 0.88696 0.95294 1.68354 1.09030 1.28871 1.09037 1.23814 0.90777 1.00019 0.96187 1.23784 1.02009 0.88600 0.97038 1.68153 1.07919 1.30113 1.07935 1.22172 0.90927 0.96222 0.97423 1.19794 0.97027 0.83885 0.90538 0.87225 1.22136 1.03043 1.01817 0.94583 1.46170 1.15733 1.32460 1.44009 1.21302 0.86431 0.80461 0.81456 1.90665 1.17212 1.71498 1.62019 1.21849 1.01508 0.97343 0.97100 1.21442 0.96151 0.95631 0.99993 1.19140 0.96119 0.93395 0.93099 1.21316 0.97600 1.13366 1.23200 0.92513 1.25028 0.95345 0.97780 0.96424 1.69974 1.18578 1.34958 1.30251 0.86543 0.81941 0.81198 0.78389 1.19672 1.21065 1.21051 0.89485 0.89786 0.89376 0.81201 0.81070 0.90674 0.91752 0.91919 0.75959 0.89420 0.89251 0.92650 0.92709 0.96632 0.96591 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.53 36.00 0.34 -0.52 16 2 C 0.09 0.92 6.78 -82.42 -0.56 0.36 16 3 N -0.44 -4.30 10.42 -9.29 -0.10 -4.39 16 4 C 0.05 0.38 11.23 -17.37 -0.19 0.19 16 5 C 0.05 0.34 11.23 -17.37 -0.19 0.15 16 6 N -0.43 -4.28 9.76 -9.29 -0.09 -4.37 16 7 C 0.07 0.77 5.70 -82.42 -0.47 0.30 16 8 C 0.19 2.17 2.67 -69.08 -0.18 1.98 16 9 H 0.11 1.26 5.04 -51.93 -0.26 1.00 16 10 C -0.16 -1.64 9.47 37.16 0.35 -1.28 16 11 N -0.73 -9.21 5.06 -54.93 -0.28 -9.49 16 12 C 0.52 8.27 7.79 -10.99 -0.09 8.18 16 13 O -0.54 -10.35 15.64 5.56 0.09 -10.26 16 14 C -0.14 -2.32 5.70 -27.89 -0.16 -2.48 16 15 C -0.09 -2.04 4.44 -26.74 -0.12 -2.16 16 16 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.69 6.22 -51.93 -0.32 0.37 16 28 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.41 4.59 8.07 -40.82 -0.33 4.26 16 34 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -34.53 340.09 -7.31 -41.84 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.95 Total: -0.26 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.82 Total: -8.76 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.27 Total: -44.79 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.53 -7.31 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874655905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.026 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds