Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32152 * 119.99939 * 2 1 4 4 C 1.32122 * 120.00026 * 180.27798 * 3 2 1 5 5 C 1.38392 * 119.99733 * 359.73587 * 4 3 2 6 6 N 1.32127 * 119.99856 * 0.02562 * 5 4 3 7 7 C 1.32156 * 119.99686 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99644 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47260 * 194.66887 * 8 7 6 10 10 C 1.52997 * 109.47368 * 74.66892 * 8 7 6 11 11 N 1.46500 * 109.47342 * 314.66903 * 8 7 6 12 12 C 1.34777 * 120.00217 * 205.00419 * 11 8 7 13 13 O 1.21279 * 119.99637 * 359.97438 * 12 11 8 14 14 C 1.50697 * 120.00186 * 180.02562 * 12 11 8 15 15 C 1.52996 * 109.47502 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47395 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47154 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00360 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00101 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99963 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46920 * 120.00018 * 21 19 17 24 24 H 1.48501 * 109.47138 * 239.99577 * 21 19 17 25 25 H 1.09005 * 109.47220 * 264.36296 * 1 2 3 26 26 H 1.09000 * 109.47660 * 24.35917 * 1 2 3 27 27 H 1.09000 * 109.47262 * 144.36780 * 1 2 3 28 28 H 1.07999 * 120.00417 * 179.71810 * 4 3 2 29 29 H 1.08001 * 120.00256 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47804 * 179.97438 * 10 8 7 31 31 H 1.08998 * 109.47280 * 299.99697 * 10 8 7 32 32 H 1.09000 * 109.47070 * 59.99585 * 10 8 7 33 33 H 0.96999 * 119.99613 * 24.99734 * 11 8 7 34 34 H 1.09010 * 109.46883 * 299.99567 * 14 12 11 35 35 H 1.09001 * 109.47352 * 59.99060 * 14 12 11 36 36 H 1.09001 * 109.47142 * 300.00360 * 15 14 12 37 37 H 1.09006 * 109.46995 * 59.99522 * 15 14 12 38 38 H 1.09001 * 109.47554 * 299.99932 * 16 15 14 39 39 H 1.09006 * 109.47105 * 59.99999 * 16 15 14 40 40 H 0.97000 * 119.99879 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1445 0.0000 4 6 3.4889 1.1445 -0.0056 5 6 4.1809 -0.0540 -0.0058 6 7 3.5202 -1.1982 -0.0011 7 6 2.1986 -1.1981 0.0045 8 6 1.4451 -2.5031 0.0093 9 1 0.4013 -2.3210 -0.2468 10 6 1.5262 -3.1338 1.4009 11 7 2.0377 -3.4129 -0.9743 12 6 1.2926 -4.3958 -1.5178 13 8 0.1318 -4.5273 -1.1922 14 6 1.9023 -5.3319 -2.5292 15 6 0.8512 -6.3465 -2.9838 16 6 1.4700 -7.2965 -4.0110 17 6 0.4349 -8.2961 -4.4583 18 1 -0.5646 -8.2575 -4.0509 19 6 0.7637 -9.2602 -5.3876 20 7 1.9809 -9.3077 -5.8832 21 14 -0.5197 -10.4989 -5.9425 22 1 -1.8010 -10.2324 -5.2405 23 1 -0.7242 -10.3767 -7.4083 24 1 -0.0544 -11.8718 -5.6204 25 1 -0.3634 -0.1009 1.0227 26 1 -0.3634 0.9361 -0.4238 27 1 -0.3634 -0.8352 -0.5987 28 1 4.0290 2.0798 -0.0102 29 1 5.2609 -0.0541 -0.0108 30 1 0.9808 -4.0775 1.4046 31 1 2.5699 -3.3160 1.6570 32 1 1.0853 -2.4569 2.1328 33 1 2.9662 -3.3078 -1.2344 34 1 2.2518 -4.7603 -3.3890 35 1 2.7430 -5.8581 -2.0768 36 1 0.5021 -6.9180 -2.1238 37 1 0.0103 -5.8205 -3.4360 38 1 1.8188 -6.7247 -4.8710 39 1 2.3111 -7.8224 -3.5591 40 1 2.2121 -9.9856 -6.5373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874655905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -36.730157 kcal Electronic energy + Delta-G solvation = -20648.064616 eV Core-core repulsion = 17461.146286 eV Total energy + Delta-G solvation = -3186.918330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36805 -40.74384 -37.18456 -36.05745 -35.48531 -34.12422 -33.69530 -31.34476 -29.47126 -29.03305 -26.41980 -25.71791 -23.95584 -23.03394 -21.91015 -21.24407 -18.91504 -18.74273 -18.11535 -17.34617 -16.90972 -16.73604 -16.48248 -16.17987 -15.99733 -15.16379 -14.88614 -14.77597 -14.25339 -14.00802 -13.85149 -13.77653 -13.69004 -13.40391 -13.11085 -13.08303 -12.63247 -12.61199 -12.50800 -12.36875 -12.17664 -12.04106 -11.54673 -11.46144 -11.24759 -10.82515 -10.54286 -10.34065 -10.11277 -9.94696 -8.19756 -6.29640 -0.29933 0.07948 1.40025 1.40216 1.54218 1.63524 2.12186 2.42476 2.65631 2.88687 3.13302 3.14898 3.46736 3.56088 3.88567 4.03399 4.16726 4.22369 4.24750 4.29050 4.32486 4.42505 4.59677 4.68097 4.69916 4.78109 4.89214 4.97700 5.05759 5.11799 5.13389 5.20766 5.41584 5.42243 5.55748 5.76414 5.87832 6.25156 6.28048 6.51486 6.74989 6.86290 7.23119 7.39101 8.92099 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.002826 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.237159 B = 9905.412941 C =10181.749271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.082 3.918 3 N -0.460 5.460 4 C 0.058 3.942 5 C 0.047 3.953 6 N -0.445 5.445 7 C 0.058 3.942 8 C 0.193 3.807 9 H 0.105 0.895 10 C -0.150 4.150 11 N -0.713 5.713 12 C 0.521 3.479 13 O -0.575 6.575 14 C -0.131 4.131 15 C -0.081 4.081 16 C 0.025 3.975 17 C -0.545 4.545 18 H 0.052 0.948 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.275 1.275 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.206 0.794 29 H 0.206 0.794 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.413 0.587 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.000 1.000 39 H 0.000 1.000 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 22.937 14.801 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 N -0.175 5.175 4 C -0.102 4.102 5 C -0.114 4.114 6 N -0.160 5.160 7 C -0.082 4.082 8 C 0.087 3.913 9 H 0.123 0.877 10 C -0.209 4.209 11 N -0.366 5.366 12 C 0.309 3.691 13 O -0.454 6.454 14 C -0.171 4.171 15 C -0.119 4.119 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.223 0.777 29 H 0.223 0.777 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.250 0.750 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.332 22.750 14.927 27.553 hybrid contribution 0.129 -0.721 -0.597 0.945 sum 4.461 22.029 14.330 26.656 Atomic orbital electron populations 1.20901 0.86710 1.04523 1.04652 1.22276 0.99360 0.88649 0.95407 1.68412 1.10366 1.28811 1.09925 1.24460 0.90150 1.01570 0.94052 1.24384 1.03526 0.87853 0.95630 1.68123 1.07789 1.31605 1.08490 1.21921 0.91305 0.95632 0.99307 1.19855 0.96963 0.84233 0.90247 0.87741 1.22060 1.02868 1.01290 0.94670 1.45990 1.15775 1.31435 1.43429 1.21000 0.85946 0.80901 0.81284 1.90656 1.18703 1.72671 1.63351 1.21682 1.00325 0.96822 0.98272 1.21151 0.96867 0.95722 0.98146 1.19028 0.95215 0.93501 0.93468 1.21727 0.98114 1.14629 1.23882 0.92932 1.25926 0.97594 0.99765 0.96328 1.70078 1.20415 1.35869 1.30712 0.85438 0.79167 0.78547 0.78143 1.19106 1.20113 1.20088 0.88175 0.89454 0.89947 0.77701 0.77727 0.92468 0.91734 0.90089 0.74988 0.87784 0.87555 0.93821 0.93891 0.98208 0.98146 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.53 71.24 0.68 -0.96 16 2 C 0.08 1.53 6.78 42.53 0.29 1.82 16 3 N -0.46 -8.20 10.42 -183.30 -1.91 -10.11 16 4 C 0.06 0.70 11.23 84.69 0.95 1.65 16 5 C 0.05 0.57 11.23 84.69 0.95 1.52 16 6 N -0.45 -8.10 9.76 -183.29 -1.79 -9.89 16 7 C 0.06 1.15 5.70 42.53 0.24 1.39 16 8 C 0.19 4.21 2.67 44.24 0.12 4.33 16 9 H 0.10 2.41 5.04 -2.38 -0.01 2.40 16 10 C -0.15 -3.04 9.47 71.98 0.68 -2.36 16 11 N -0.71 -17.51 5.06 -446.10 -2.26 -19.77 16 12 C 0.52 16.61 7.79 87.66 0.68 17.29 16 13 O -0.57 -22.42 15.64 -3.03 -0.05 -22.47 16 14 C -0.13 -4.37 5.70 29.85 0.17 -4.20 16 15 C -0.08 -3.57 4.44 30.59 0.14 -3.44 16 16 C 0.02 1.34 4.97 29.85 0.15 1.49 16 17 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 18 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 19 C 0.00 0.10 5.46 84.66 0.46 0.56 16 20 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 21 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.30 6.22 -2.39 -0.01 1.29 16 28 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 29 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.41 8.84 8.07 -92.71 -0.75 8.10 16 34 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 35 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 37 H 0.04 1.97 8.10 -2.38 -0.02 1.95 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.77 340.09 2.35 -72.43 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.29 Total: 11.98 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.74 Total: -12.99 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.67 Total: -96.41 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.77 2.35 -72.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874655905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -74.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds