Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.54116 * 2 1 4 4 C 1.31844 * 120.96981 * 179.97438 * 3 2 1 5 5 C 1.50702 * 118.95164 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47234 * 120.00421 * 5 4 3 7 7 C 1.53004 * 109.47449 * 240.00153 * 5 4 3 8 8 N 1.31887 * 122.10066 * 0.28147 * 4 3 2 9 9 C 1.32139 * 120.95922 * 359.43478 * 8 4 3 10 10 C 1.39936 * 120.53920 * 179.97438 * 2 1 3 11 11 C 1.47831 * 120.93743 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99519 * 306.86023 * 11 10 2 13 13 N 1.34775 * 120.00413 * 126.86316 * 11 10 2 14 14 C 1.46505 * 119.99509 * 4.17716 * 13 11 10 15 15 C 1.46501 * 120.00269 * 184.17802 * 13 11 10 16 16 C 1.50694 * 109.47080 * 89.99790 * 15 13 11 17 17 H 1.08002 * 120.00326 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99962 * 180.02562 * 16 15 13 19 19 N 1.31509 * 119.99602 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47228 * 59.99930 * 20 18 16 22 22 H 1.48507 * 109.46944 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47293 * 299.99777 * 20 18 16 24 24 H 1.09004 * 109.47190 * 85.31231 * 1 2 3 25 25 H 1.09000 * 109.47220 * 205.31229 * 1 2 3 26 26 H 1.09002 * 109.47141 * 325.31482 * 1 2 3 27 27 H 1.09004 * 109.47214 * 0.02562 * 5 4 3 28 28 H 1.09006 * 109.46998 * 180.02562 * 6 5 4 29 29 H 1.08991 * 109.47352 * 60.00062 * 6 5 4 30 30 H 1.09005 * 109.47097 * 299.99716 * 6 5 4 31 31 H 1.08995 * 109.46860 * 300.00373 * 7 5 4 32 32 H 1.09001 * 109.46710 * 59.99674 * 7 5 4 33 33 H 1.08996 * 109.47093 * 179.97438 * 7 5 4 34 34 H 1.07997 * 120.53392 * 180.28160 * 9 8 4 35 35 H 1.08991 * 109.47187 * 84.60116 * 14 13 11 36 36 H 1.09005 * 109.46433 * 204.59928 * 14 13 11 37 37 H 1.08995 * 109.47105 * 324.59743 * 14 13 11 38 38 H 1.08998 * 109.46850 * 209.99935 * 15 13 11 39 39 H 1.09004 * 109.46938 * 329.99627 * 15 13 11 40 40 H 0.97005 * 120.00030 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 6 4.2166 2.4723 -0.0001 6 6 5.0934 2.5768 1.2493 7 6 5.0943 2.5752 -1.2491 8 7 4.2062 0.0362 -0.0045 9 6 3.6164 -1.1462 0.0010 10 6 2.2180 -1.2052 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.6667 -2.7363 0.8426 13 7 1.8058 -3.4308 -0.9329 14 6 2.8874 -3.1882 -1.8909 15 6 1.0436 -4.6806 -0.9897 16 6 -0.1435 -4.5040 -1.9011 17 1 -0.3130 -3.5558 -2.3896 18 6 -1.0133 -5.5530 -2.1114 19 7 -0.8066 -6.7078 -1.5170 20 14 -2.4843 -5.3343 -3.2417 21 1 -2.0130 -4.9803 -4.6047 22 1 -3.2570 -6.6012 -3.2992 23 1 -3.3520 -4.2479 -2.7203 24 1 -0.3634 0.0840 -1.0243 25 1 -0.3634 -0.9290 0.4394 26 1 -0.3633 0.8451 0.5848 27 1 3.4872 3.2823 -0.0005 28 1 5.6136 3.5347 1.2490 29 1 5.8228 1.7669 1.2501 30 1 4.4681 2.5035 2.1392 31 1 5.8237 1.7653 -1.2483 32 1 4.4697 2.5007 -2.1392 33 1 5.6144 3.5331 -1.2497 34 1 4.2039 -2.0524 0.0014 35 1 3.8391 -3.4778 -1.4453 36 1 2.7138 -3.7771 -2.7916 37 1 2.9140 -2.1295 -2.1484 38 1 1.6807 -5.4776 -1.3731 39 1 0.6980 -4.9412 0.0107 40 1 -1.4187 -7.4457 -1.6646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877979522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = 1.106672 kcal Electronic energy + Delta-G solvation = -21631.674384 eV Core-core repulsion = 18446.396783 eV Total energy + Delta-G solvation = -3185.277602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31481 -38.88420 -35.81964 -35.12318 -34.12086 -32.75201 -31.69157 -28.84074 -27.63417 -27.34217 -26.17379 -24.91904 -23.26854 -22.87236 -20.56462 -19.15305 -17.96530 -16.72511 -16.56860 -16.23158 -15.59596 -15.04620 -14.53380 -14.38224 -14.26719 -14.13672 -13.35526 -13.28398 -13.15621 -12.73950 -12.45382 -12.28652 -12.22311 -12.06454 -11.98627 -11.87915 -11.38283 -11.27338 -11.16758 -11.09618 -10.97554 -10.65589 -10.46788 -10.22998 -9.75808 -9.30118 -9.24816 -9.06492 -8.49911 -7.80884 -6.11364 -4.17030 0.68976 1.07039 3.13016 3.27905 3.32659 3.35530 3.59613 3.72455 3.88906 4.05697 4.38441 4.46832 4.79126 4.83493 4.94257 4.95112 5.09949 5.23448 5.39967 5.45985 5.54178 5.55304 5.64307 5.66792 5.74253 5.75103 5.77350 5.92585 6.04024 6.07637 6.09868 6.26921 6.46347 6.87198 7.00197 7.32507 7.39328 7.83790 8.06833 8.13459 8.20552 8.73822 8.90756 9.48337 10.96705 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.004180 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.960330 B = 6697.011621 C = 6897.340170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.223 3.777 3 N -0.521 5.521 4 C 0.329 3.671 5 C -0.026 4.026 6 C -0.140 4.140 7 C -0.140 4.140 8 N -0.520 5.520 9 C 0.178 3.822 10 C -0.226 4.226 11 C 0.559 3.441 12 O -0.527 6.527 13 N -0.590 5.590 14 C 0.081 3.919 15 C 0.245 3.755 16 C -0.532 4.532 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.173 0.827 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 15.443 0.906 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 N -0.236 5.236 4 C 0.062 3.938 5 C -0.047 4.047 6 C -0.198 4.198 7 C -0.198 4.198 8 N -0.234 5.234 9 C 0.012 3.988 10 C -0.234 4.234 11 C 0.344 3.656 12 O -0.405 6.405 13 N -0.321 5.321 14 C -0.064 4.064 15 C 0.126 3.874 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.190 0.810 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.333 15.943 1.344 19.607 hybrid contribution -1.221 -0.875 -0.768 1.687 sum 10.112 15.068 0.576 18.156 Atomic orbital electron populations 1.21068 0.87043 1.05896 1.04013 1.21838 0.97814 0.86418 0.86218 1.68159 1.09472 1.29902 1.16045 1.23240 0.86552 0.94607 0.89372 1.19969 0.96910 0.90479 0.97313 1.21790 0.99572 1.02549 0.95925 1.21787 0.99569 1.02558 0.95896 1.68155 1.41146 0.98333 1.15730 1.23469 0.90845 0.96241 0.88260 1.21879 0.96533 0.97131 1.07829 1.17686 0.82791 0.82701 0.82453 1.90747 1.33199 1.78709 1.37809 1.48136 1.34063 1.20041 1.29821 1.21757 0.89565 1.00897 0.94132 1.19395 0.90444 0.78532 0.99028 1.21365 1.09567 0.98225 1.27891 0.92444 1.24926 0.97894 0.95006 0.96097 1.69916 1.37810 1.02498 1.42913 0.86549 0.82448 0.77527 0.80868 1.20227 1.21098 1.20083 0.89533 0.87504 0.89914 0.88687 0.91677 0.91367 0.92790 0.91332 0.92767 0.91695 0.81037 0.93344 0.90058 0.92980 0.94592 0.93409 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.94 36.00 0.36 -1.57 16 2 C 0.22 3.71 6.86 -81.81 -0.56 3.15 16 3 N -0.52 -8.09 10.22 -6.67 -0.07 -8.16 16 4 C 0.33 4.59 6.34 -157.07 -1.00 3.59 16 5 C -0.03 -0.27 3.25 -91.77 -0.30 -0.57 16 6 C -0.14 -1.26 9.09 37.15 0.34 -0.92 16 7 C -0.14 -1.25 9.08 37.16 0.34 -0.91 16 8 N -0.52 -7.32 9.77 -10.39 -0.10 -7.42 16 9 C 0.18 2.60 9.25 -16.77 -0.16 2.44 16 10 C -0.23 -3.87 4.75 -104.69 -0.50 -4.37 16 11 C 0.56 11.57 6.66 -12.34 -0.08 11.48 16 12 O -0.53 -12.81 14.70 5.32 0.08 -12.73 16 13 N -0.59 -12.18 2.86 -184.09 -0.53 -12.70 16 14 C 0.08 1.26 9.17 59.85 0.55 1.81 16 15 C 0.24 6.18 5.17 -5.20 -0.03 6.15 16 16 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.11 1.95 5.67 -51.93 -0.29 1.66 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.01 -51.93 -0.42 0.24 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.17 2.10 6.83 -52.49 -0.36 1.74 16 35 H 0.05 0.62 7.28 -51.93 -0.38 0.24 16 36 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 37 H 0.05 0.76 6.47 -51.93 -0.34 0.42 16 38 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.05 1.36 7.37 -51.93 -0.38 0.97 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -31.71 334.90 -7.23 -38.94 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.92 Total: -1.15 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.46 Total: 7.03 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.04 Total: -53.44 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.71 -7.23 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877979522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.045 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds