Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 120.54116 * 2 1 4 4 C 1.31844 * 120.96981 * 179.97438 * 3 2 1 5 5 C 1.50702 * 118.95164 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47234 * 120.00421 * 5 4 3 7 7 C 1.53004 * 109.47449 * 240.00153 * 5 4 3 8 8 N 1.31887 * 122.10066 * 0.28147 * 4 3 2 9 9 C 1.32139 * 120.95922 * 359.43478 * 8 4 3 10 10 C 1.39936 * 120.53920 * 179.97438 * 2 1 3 11 11 C 1.47831 * 120.93743 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99519 * 306.86023 * 11 10 2 13 13 N 1.34775 * 120.00413 * 126.86316 * 11 10 2 14 14 C 1.46505 * 119.99509 * 4.17716 * 13 11 10 15 15 C 1.46501 * 120.00269 * 184.17802 * 13 11 10 16 16 C 1.50694 * 109.47080 * 89.99790 * 15 13 11 17 17 H 1.08002 * 120.00326 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99962 * 180.02562 * 16 15 13 19 19 N 1.31509 * 119.99602 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47228 * 59.99930 * 20 18 16 22 22 H 1.48507 * 109.46944 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47293 * 299.99777 * 20 18 16 24 24 H 1.09004 * 109.47190 * 85.31231 * 1 2 3 25 25 H 1.09000 * 109.47220 * 205.31229 * 1 2 3 26 26 H 1.09002 * 109.47141 * 325.31482 * 1 2 3 27 27 H 1.09004 * 109.47214 * 0.02562 * 5 4 3 28 28 H 1.09006 * 109.46998 * 180.02562 * 6 5 4 29 29 H 1.08991 * 109.47352 * 60.00062 * 6 5 4 30 30 H 1.09005 * 109.47097 * 299.99716 * 6 5 4 31 31 H 1.08995 * 109.46860 * 300.00373 * 7 5 4 32 32 H 1.09001 * 109.46710 * 59.99674 * 7 5 4 33 33 H 1.08996 * 109.47093 * 179.97438 * 7 5 4 34 34 H 1.07997 * 120.53392 * 180.28160 * 9 8 4 35 35 H 1.08991 * 109.47187 * 84.60116 * 14 13 11 36 36 H 1.09005 * 109.46433 * 204.59928 * 14 13 11 37 37 H 1.08995 * 109.47105 * 324.59743 * 14 13 11 38 38 H 1.08998 * 109.46850 * 209.99935 * 15 13 11 39 39 H 1.09004 * 109.46938 * 329.99627 * 15 13 11 40 40 H 0.97005 * 120.00030 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1786 1.1383 0.0000 4 6 3.4970 1.1482 0.0005 5 6 4.2166 2.4723 -0.0001 6 6 5.0934 2.5768 1.2493 7 6 5.0943 2.5752 -1.2491 8 7 4.2062 0.0362 -0.0045 9 6 3.6164 -1.1462 0.0010 10 6 2.2180 -1.2052 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.6667 -2.7363 0.8426 13 7 1.8058 -3.4308 -0.9329 14 6 2.8874 -3.1882 -1.8909 15 6 1.0436 -4.6806 -0.9897 16 6 -0.1435 -4.5040 -1.9011 17 1 -0.3130 -3.5558 -2.3896 18 6 -1.0133 -5.5530 -2.1114 19 7 -0.8066 -6.7078 -1.5170 20 14 -2.4843 -5.3343 -3.2417 21 1 -2.0130 -4.9803 -4.6047 22 1 -3.2570 -6.6012 -3.2992 23 1 -3.3520 -4.2479 -2.7203 24 1 -0.3634 0.0840 -1.0243 25 1 -0.3634 -0.9290 0.4394 26 1 -0.3633 0.8451 0.5848 27 1 3.4872 3.2823 -0.0005 28 1 5.6136 3.5347 1.2490 29 1 5.8228 1.7669 1.2501 30 1 4.4681 2.5035 2.1392 31 1 5.8237 1.7653 -1.2483 32 1 4.4697 2.5007 -2.1392 33 1 5.6144 3.5331 -1.2497 34 1 4.2039 -2.0524 0.0014 35 1 3.8391 -3.4778 -1.4453 36 1 2.7138 -3.7771 -2.7916 37 1 2.9140 -2.1295 -2.1484 38 1 1.6807 -5.4776 -1.3731 39 1 0.6980 -4.9412 0.0107 40 1 -1.4187 -7.4457 -1.6646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877979522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -18.850938 kcal Electronic energy + Delta-G solvation = -21632.539811 eV Core-core repulsion = 18446.396783 eV Total energy + Delta-G solvation = -3186.143029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53800 -40.46152 -36.90875 -36.67291 -35.38560 -34.71870 -32.94798 -30.35648 -29.26050 -28.02511 -27.63210 -26.30884 -24.69477 -24.39105 -21.63526 -20.65394 -19.18180 -18.69233 -18.20253 -17.30779 -17.25885 -16.46473 -16.17382 -15.89540 -15.21873 -15.19487 -14.82019 -14.50830 -14.35095 -14.18531 -13.79978 -13.67396 -13.50852 -13.26550 -13.20701 -13.11212 -12.93815 -12.82926 -12.56617 -12.24248 -12.16977 -12.12405 -11.85552 -11.76088 -11.65447 -10.82663 -10.64912 -10.46283 -10.40985 -9.54509 -8.23644 -6.38282 -0.53705 -0.13470 1.37792 1.41229 1.48115 1.59355 2.14153 2.39501 2.53786 2.70088 2.91222 3.06879 3.26597 3.45395 3.82289 3.91704 4.06310 4.19336 4.25169 4.36697 4.50109 4.51276 4.58295 4.69712 4.82786 4.85269 4.86385 4.97064 4.97388 5.00107 5.09854 5.20084 5.25362 5.35649 5.44654 5.49497 5.75946 5.77169 6.02685 6.54479 6.69720 6.89880 7.15128 7.34392 8.83530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.004180 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.960330 B = 6697.011621 C = 6897.340170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.216 3.784 3 N -0.529 5.529 4 C 0.330 3.670 5 C -0.029 4.029 6 C -0.136 4.136 7 C -0.135 4.135 8 N -0.516 5.516 9 C 0.193 3.807 10 C -0.245 4.245 11 C 0.560 3.440 12 O -0.575 6.575 13 N -0.595 5.595 14 C 0.078 3.922 15 C 0.259 3.741 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.197 0.803 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.006 0.994 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.846 17.528 -0.259 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 N -0.244 5.244 4 C 0.063 3.937 5 C -0.049 4.049 6 C -0.193 4.193 7 C -0.193 4.193 8 N -0.230 5.230 9 C 0.026 3.974 10 C -0.253 4.253 11 C 0.347 3.653 12 O -0.456 6.456 13 N -0.324 5.324 14 C -0.065 4.065 15 C 0.139 3.861 16 C -0.585 4.585 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.213 0.787 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.024 0.976 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.822 18.059 0.154 22.148 hybrid contribution -1.584 -1.455 -0.368 2.182 sum 11.237 16.604 -0.214 20.050 Atomic orbital electron populations 1.20993 0.87044 1.05064 1.04532 1.21954 0.98195 0.86752 0.86072 1.68264 1.10259 1.29007 1.16824 1.24100 0.86312 0.96061 0.87186 1.20207 0.97318 0.88571 0.98800 1.21776 0.99068 1.03882 0.94623 1.21768 0.99061 1.03876 0.94551 1.68319 1.40610 0.98163 1.15893 1.23811 0.89788 0.97402 0.86407 1.21534 0.97528 0.95112 1.11112 1.18137 0.82175 0.83603 0.81429 1.90714 1.35459 1.79769 1.39654 1.48084 1.34770 1.18683 1.30898 1.22008 0.89291 1.01936 0.93226 1.18887 0.90500 0.80606 0.96142 1.21642 1.10578 0.98125 1.28152 0.92788 1.25802 1.00734 0.94647 0.97563 1.70030 1.38993 1.03286 1.44195 0.85509 0.78744 0.77537 0.79303 1.18681 1.20401 1.20102 0.88786 0.90537 0.87937 0.87963 0.88956 0.91935 0.93732 0.91831 0.93526 0.89055 0.78665 0.89798 0.90362 0.91436 0.95011 0.97579 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 9.94 71.23 0.71 -3.06 16 2 C 0.22 7.09 6.86 42.92 0.29 7.38 16 3 N -0.53 -15.63 10.22 -175.02 -1.79 -17.42 16 4 C 0.33 8.49 6.34 138.71 0.88 9.37 16 5 C -0.03 -0.52 3.25 -11.54 -0.04 -0.55 16 6 C -0.14 -2.04 9.09 71.98 0.65 -1.38 16 7 C -0.13 -1.97 9.08 71.98 0.65 -1.31 16 8 N -0.52 -13.33 9.77 -186.80 -1.83 -15.16 16 9 C 0.19 5.25 9.25 85.06 0.79 6.04 16 10 C -0.25 -8.28 4.75 -19.91 -0.09 -8.38 16 11 C 0.56 23.71 6.66 86.78 0.58 24.29 16 12 O -0.58 -29.42 14.70 -3.89 -0.06 -29.48 16 13 N -0.59 -24.86 2.86 -854.60 -2.44 -27.30 16 14 C 0.08 2.33 9.17 127.77 1.17 3.50 16 15 C 0.26 13.58 5.17 85.63 0.44 14.02 16 16 C -0.55 -30.67 9.39 25.60 0.24 -30.43 16 17 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 18 C 0.01 0.68 5.46 84.66 0.46 1.14 16 19 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 20 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.08 2.93 5.67 -2.39 -0.01 2.92 16 26 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 27 H 0.10 1.72 8.09 -2.38 -0.02 1.70 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 1.02 8.01 -2.39 -0.02 1.00 16 30 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 1.01 8.00 -2.39 -0.02 0.99 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.20 4.25 6.83 -2.91 -0.02 4.23 16 35 H 0.08 1.93 7.28 -2.39 -0.02 1.91 16 36 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 37 H 0.07 1.83 6.47 -2.39 -0.02 1.81 16 38 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 39 H 0.01 0.37 7.37 -2.38 -0.02 0.35 16 40 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -70.47 334.90 3.97 -66.50 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.03 Total: 10.81 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.74 Total: 20.62 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -5.77 Total: -114.38 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.47 3.97 -66.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877979522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.651 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds