Wall clock time and date at job start Mon Mar 30 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38406 * 120.44856 * 2 1 4 4 C 1.38798 * 118.49464 * 180.02562 * 3 2 1 5 5 C 1.38123 * 119.30824 * 359.97438 * 4 3 2 6 6 N 1.31909 * 120.84442 * 359.72433 * 5 4 3 7 7 C 1.32371 * 121.63959 * 0.56788 * 6 5 4 8 8 N 1.39402 * 119.69835 * 179.71065 * 7 6 5 9 9 C 1.34783 * 120.00080 * 359.72103 * 8 7 6 10 10 O 1.21273 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.46902 * 109.46751 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99882 * 293.95183 * 12 11 9 14 14 C 1.46904 * 110.99713 * 170.00089 * 12 11 9 15 15 H 1.09005 * 109.47078 * 59.99805 * 14 12 11 16 16 C 1.53000 * 109.47015 * 299.99977 * 14 12 11 17 17 C 1.50696 * 109.46794 * 179.97438 * 14 12 11 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09003 * 109.46566 * 269.97824 * 1 2 3 26 26 H 1.09001 * 109.46959 * 29.97459 * 1 2 3 27 27 H 1.08992 * 109.46903 * 149.97739 * 1 2 3 28 28 H 1.07996 * 120.75531 * 0.04182 * 3 2 1 29 29 H 1.07994 * 120.34548 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.57603 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00479 * 179.73048 * 8 7 6 32 32 H 1.08993 * 109.46820 * 60.00502 * 11 9 8 33 33 H 1.09003 * 109.46823 * 300.00465 * 11 9 8 34 34 H 1.09001 * 109.47028 * 296.04863 * 13 12 11 35 35 H 1.09004 * 109.46903 * 56.05040 * 13 12 11 36 36 H 1.09000 * 109.47139 * 176.04661 * 13 12 11 37 37 H 1.08996 * 109.47024 * 59.99984 * 16 14 12 38 38 H 1.08998 * 109.46637 * 179.97438 * 16 14 12 39 39 H 1.08997 * 109.46749 * 299.99841 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5956 1.1459 -0.0005 5 6 4.2302 -0.0809 -0.0005 6 7 3.5351 -1.2020 0.0054 7 6 2.2114 -1.1983 0.0005 8 7 1.5174 -2.4073 0.0010 9 6 2.1942 -3.5729 0.0009 10 8 3.4069 -3.5698 0.0008 11 6 1.4439 -4.8798 0.0009 12 7 2.4014 -5.9940 0.0014 13 6 3.1672 -6.0306 -1.2517 14 6 1.7200 -7.2735 0.2395 15 1 0.9843 -7.4451 -0.5463 16 6 1.0157 -7.2312 1.5971 17 6 2.7318 -8.3902 0.2324 18 1 3.7765 -8.1714 0.0679 19 6 2.3239 -9.6914 0.4370 20 7 3.2069 -10.6660 0.4314 21 14 0.5170 -10.0697 0.7223 22 1 0.2225 -10.0111 2.1766 23 1 -0.3169 -9.0701 0.0076 24 1 0.2089 -11.4288 0.2092 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6882 2.1396 0.0007 29 1 4.1726 2.0587 -0.0010 30 1 5.3094 -0.1228 -0.0005 31 1 0.5474 -2.4098 0.0013 32 1 0.8175 -4.9391 -0.8891 33 1 0.8174 -4.9391 0.8909 34 1 2.4920 -6.2273 -2.0845 35 1 3.6615 -5.0710 -1.4036 36 1 3.9163 -6.8205 -1.1968 37 1 0.2839 -6.4235 1.6018 38 1 0.5098 -8.1804 1.7736 39 1 1.7514 -7.0596 2.3828 40 1 2.9199 -11.5812 0.5757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878189154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:05 Heat of formation + Delta-G solvation = 38.442584 kcal Electronic energy + Delta-G solvation = -21441.708273 eV Core-core repulsion = 18258.049678 eV Total energy + Delta-G solvation = -3183.658595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90916 -39.11433 -36.75429 -34.98935 -33.61903 -32.63817 -31.00675 -30.16991 -28.25465 -27.26505 -24.91942 -24.13353 -23.24217 -22.16524 -20.46203 -19.45861 -18.18202 -17.12741 -16.75375 -15.83374 -15.65637 -15.52412 -14.91937 -14.53435 -14.36007 -13.94889 -13.86431 -13.59642 -13.14749 -13.04468 -12.87314 -12.78056 -12.47893 -12.15795 -11.85011 -11.75221 -11.10134 -11.00148 -10.77671 -10.58292 -10.50276 -10.11841 -9.84719 -9.73960 -9.52531 -9.08277 -8.84339 -8.56160 -8.24037 -7.36704 -6.05586 -4.04442 0.97664 1.20815 2.83685 2.90855 3.25482 3.33384 3.37416 3.82037 4.28510 4.38970 4.53202 4.64415 4.79773 4.83499 4.93839 5.12975 5.21808 5.25556 5.26207 5.45647 5.55993 5.62276 5.69772 5.86346 6.02781 6.13357 6.21669 6.28549 6.38548 6.42728 6.61749 6.71456 6.76393 7.02331 7.17013 7.24898 7.55848 7.89366 8.00333 8.09325 8.47133 8.65140 9.03111 9.55123 11.07212 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037451 B = 0.003756 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.470720 B = 7452.121628 C = 7981.882532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.183 4.183 3 C -0.051 4.051 4 C -0.211 4.211 5 C 0.129 3.871 6 N -0.472 5.472 7 C 0.370 3.630 8 N -0.669 5.669 9 C 0.500 3.500 10 O -0.443 6.443 11 C 0.031 3.969 12 N -0.508 5.508 13 C 0.033 3.967 14 C 0.183 3.817 15 H -0.001 1.001 16 C -0.148 4.148 17 C -0.505 4.505 18 H 0.085 0.915 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.886 3.114 22 H -0.278 1.278 23 H -0.270 1.270 24 H -0.297 1.297 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.007 0.993 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.027 0.973 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 23.884 -1.462 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.189 4.189 3 C -0.077 4.077 4 C -0.232 4.232 5 C -0.030 4.030 6 N -0.186 5.186 7 C 0.138 3.862 8 N -0.318 5.318 9 C 0.285 3.715 10 O -0.308 6.308 11 C -0.101 4.101 12 N -0.233 5.233 13 C -0.115 4.115 14 C 0.076 3.924 15 H 0.017 0.983 16 C -0.206 4.206 17 C -0.543 4.543 18 H 0.103 0.897 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.205 1.205 23 H -0.195 1.195 24 H -0.225 1.225 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.174 0.826 31 H 0.250 0.750 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.118 22.768 -1.055 23.599 hybrid contribution -2.508 0.382 -0.394 2.568 sum -8.626 23.150 -1.450 24.748 Atomic orbital electron populations 1.20653 0.90288 1.02941 1.02574 1.20282 0.97173 0.92462 1.08975 1.21216 0.94026 0.97214 0.95277 1.22015 0.95148 0.99568 1.06497 1.22712 1.00291 0.86817 0.93138 1.67754 1.05483 1.30820 1.14584 1.18399 0.88881 0.85210 0.93676 1.43986 1.10466 1.03886 1.73426 1.21251 0.89079 0.84605 0.76561 1.90776 1.13153 1.85906 1.40970 1.22065 0.95342 0.89992 1.02696 1.61699 1.23851 1.02319 1.35435 1.22395 0.98153 1.02741 0.88217 1.19749 0.93607 0.86873 0.92211 0.98323 1.22255 0.99068 0.98489 1.00765 1.20975 0.95436 0.88982 1.48914 0.89669 1.24928 0.97146 0.96180 0.94933 1.69881 1.33643 1.00020 1.50083 0.86881 0.86358 0.76782 0.78270 1.20504 1.19491 1.22464 0.90872 0.90949 0.91765 0.84851 0.84976 0.82569 0.74969 0.92819 0.87817 0.97411 0.91722 0.89801 0.95373 0.93809 0.91783 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.59 36.01 0.35 -0.34 16 2 C -0.18 -1.82 5.91 -104.28 -0.62 -2.44 16 3 C -0.05 -0.44 9.85 -39.31 -0.39 -0.83 16 4 C -0.21 -1.93 10.11 -39.42 -0.40 -2.33 16 5 C 0.13 1.55 11.18 -17.56 -0.20 1.35 16 6 N -0.47 -7.45 7.87 -12.37 -0.10 -7.55 16 7 C 0.37 5.01 7.41 -154.70 -1.15 3.86 16 8 N -0.67 -8.58 5.30 -11.43 -0.06 -8.64 16 9 C 0.50 8.40 7.49 -10.98 -0.08 8.32 16 10 O -0.44 -9.29 12.58 5.56 0.07 -9.22 16 11 C 0.03 0.52 5.26 -4.97 -0.03 0.49 16 12 N -0.51 -11.03 4.36 -237.72 -1.04 -12.07 16 13 C 0.03 0.70 8.88 60.07 0.53 1.24 16 14 C 0.18 4.35 1.65 -68.86 -0.11 4.23 16 15 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 16 C -0.15 -3.20 8.47 37.16 0.31 -2.89 16 17 C -0.50 -14.31 8.51 -34.44 -0.29 -14.60 16 18 H 0.09 2.66 6.64 -52.49 -0.35 2.31 16 19 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 20 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 21 Si 0.89 21.73 24.37 -169.99 -4.14 17.59 16 22 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 23 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 24 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.41 3.65 6.68 -40.82 -0.27 3.38 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 33 H 0.10 1.55 5.83 -51.93 -0.30 1.25 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.06 1.35 5.82 -51.93 -0.30 1.05 16 36 H 0.08 1.98 6.23 -51.93 -0.32 1.65 16 37 H 0.03 0.49 6.20 -51.93 -0.32 0.17 16 38 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 39 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -35.39 316.27 -7.21 -42.60 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.32 Total: 1.33 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.16 Total: -2.02 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.42 Total: -55.04 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.39 -7.21 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.038 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds