Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38406 * 120.44856 * 2 1 4 4 C 1.38798 * 118.49464 * 180.02562 * 3 2 1 5 5 C 1.38123 * 119.30824 * 359.97438 * 4 3 2 6 6 N 1.31909 * 120.84442 * 359.72433 * 5 4 3 7 7 C 1.32371 * 121.63959 * 0.56788 * 6 5 4 8 8 N 1.39402 * 119.69835 * 179.71065 * 7 6 5 9 9 C 1.34783 * 120.00080 * 359.72103 * 8 7 6 10 10 O 1.21273 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.46902 * 109.46751 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99882 * 293.95183 * 12 11 9 14 14 C 1.46904 * 110.99713 * 170.00089 * 12 11 9 15 15 H 1.09005 * 109.47078 * 59.99805 * 14 12 11 16 16 C 1.53000 * 109.47015 * 299.99977 * 14 12 11 17 17 C 1.50696 * 109.46794 * 179.97438 * 14 12 11 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99717 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09003 * 109.46566 * 269.97824 * 1 2 3 26 26 H 1.09001 * 109.46959 * 29.97459 * 1 2 3 27 27 H 1.08992 * 109.46903 * 149.97739 * 1 2 3 28 28 H 1.07996 * 120.75531 * 0.04182 * 3 2 1 29 29 H 1.07994 * 120.34548 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.57603 * 180.02562 * 5 4 3 31 31 H 0.97003 * 120.00479 * 179.73048 * 8 7 6 32 32 H 1.08993 * 109.46820 * 60.00502 * 11 9 8 33 33 H 1.09003 * 109.46823 * 300.00465 * 11 9 8 34 34 H 1.09001 * 109.47028 * 296.04863 * 13 12 11 35 35 H 1.09004 * 109.46903 * 56.05040 * 13 12 11 36 36 H 1.09000 * 109.47139 * 176.04661 * 13 12 11 37 37 H 1.08996 * 109.47024 * 59.99984 * 16 14 12 38 38 H 1.08998 * 109.46637 * 179.97438 * 16 14 12 39 39 H 1.08997 * 109.46749 * 299.99841 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5956 1.1459 -0.0005 5 6 4.2302 -0.0809 -0.0005 6 7 3.5351 -1.2020 0.0054 7 6 2.2114 -1.1983 0.0005 8 7 1.5174 -2.4073 0.0010 9 6 2.1942 -3.5729 0.0009 10 8 3.4069 -3.5698 0.0008 11 6 1.4439 -4.8798 0.0009 12 7 2.4014 -5.9940 0.0014 13 6 3.1672 -6.0306 -1.2517 14 6 1.7200 -7.2735 0.2395 15 1 0.9843 -7.4451 -0.5463 16 6 1.0157 -7.2312 1.5971 17 6 2.7318 -8.3902 0.2324 18 1 3.7765 -8.1714 0.0679 19 6 2.3239 -9.6914 0.4370 20 7 3.2069 -10.6660 0.4314 21 14 0.5170 -10.0697 0.7223 22 1 0.2225 -10.0111 2.1766 23 1 -0.3169 -9.0701 0.0076 24 1 0.2089 -11.4288 0.2092 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6882 2.1396 0.0007 29 1 4.1726 2.0587 -0.0010 30 1 5.3094 -0.1228 -0.0005 31 1 0.5474 -2.4098 0.0013 32 1 0.8175 -4.9391 -0.8891 33 1 0.8174 -4.9391 0.8909 34 1 2.4920 -6.2273 -2.0845 35 1 3.6615 -5.0710 -1.4036 36 1 3.9163 -6.8205 -1.1968 37 1 0.2839 -6.4235 1.6018 38 1 0.5098 -8.1804 1.7736 39 1 1.7514 -7.0596 2.3828 40 1 2.9199 -11.5812 0.5757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878189154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = 11.709640 kcal Electronic energy + Delta-G solvation = -21442.867501 eV Core-core repulsion = 18258.049678 eV Total energy + Delta-G solvation = -3184.817822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87134 -40.30202 -38.36216 -36.06798 -34.70851 -34.38676 -32.22354 -31.73543 -29.60013 -28.04845 -26.79403 -25.68004 -24.40791 -22.96810 -21.80818 -21.03270 -19.21984 -18.81456 -18.26246 -17.13905 -16.71446 -16.44269 -16.39182 -15.90668 -15.59058 -15.39330 -15.06035 -14.91587 -14.70827 -14.19332 -13.91965 -13.79837 -13.63687 -13.41647 -13.32456 -12.76903 -12.69142 -12.51824 -12.45228 -12.37125 -12.02971 -11.70234 -11.41417 -11.11255 -10.99651 -10.72023 -10.52809 -9.94040 -9.13053 -9.00545 -8.26392 -6.31318 0.14730 0.43764 1.32742 1.37932 1.48890 1.72370 1.82726 2.34026 2.96949 3.06123 3.18822 3.46128 3.84933 3.90326 4.09709 4.19411 4.20647 4.31432 4.35806 4.45409 4.54130 4.63757 4.64516 4.76448 4.81805 4.85608 4.86399 5.01053 5.13983 5.19645 5.23120 5.31578 5.40715 5.42555 5.65041 5.88568 5.97126 6.20936 6.30684 6.67005 6.75686 7.08406 7.33003 7.42341 8.90599 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037451 B = 0.003756 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.470720 B = 7452.121628 C = 7981.882532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.171 4.171 3 C -0.054 4.054 4 C -0.194 4.194 5 C 0.096 3.904 6 N -0.526 5.526 7 C 0.331 3.669 8 N -0.652 5.652 9 C 0.502 3.498 10 O -0.498 6.498 11 C 0.032 3.968 12 N -0.532 5.532 13 C 0.046 3.954 14 C 0.186 3.814 15 H 0.004 0.996 16 C -0.145 4.145 17 C -0.513 4.513 18 H 0.033 0.967 19 C 0.007 3.993 20 N -0.952 5.952 21 Si 0.956 3.044 22 H -0.263 1.263 23 H -0.240 1.240 24 H -0.300 1.300 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.173 0.827 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.431 0.569 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.020 0.980 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 27.070 -1.149 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C -0.080 4.080 4 C -0.215 4.215 5 C -0.061 4.061 6 N -0.241 5.241 7 C 0.100 3.900 8 N -0.303 5.303 9 C 0.288 3.712 10 O -0.368 6.368 11 C -0.099 4.099 12 N -0.257 5.257 13 C -0.102 4.102 14 C 0.079 3.921 15 H 0.022 0.978 16 C -0.202 4.202 17 C -0.552 4.552 18 H 0.051 0.949 19 C -0.189 4.189 20 N -0.593 5.593 21 Si 0.782 3.218 22 H -0.189 1.189 23 H -0.164 1.164 24 H -0.228 1.228 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.191 0.809 29 H 0.182 0.818 30 H 0.178 0.822 31 H 0.273 0.727 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.337 26.035 -0.744 28.022 hybrid contribution -1.088 -0.417 -0.525 1.278 sum -11.425 25.618 -1.269 28.079 Atomic orbital electron populations 1.20784 0.87497 1.04447 1.03795 1.20697 0.99108 0.91385 1.06455 1.21755 0.93880 0.98383 0.93935 1.22375 0.95988 0.99445 1.03681 1.22961 1.00799 0.87435 0.94891 1.67569 1.07356 1.33144 1.16031 1.18712 0.88778 0.86252 0.96245 1.43622 1.11217 1.02870 1.72565 1.21250 0.88436 0.85677 0.75790 1.90764 1.15336 1.86760 1.43954 1.22163 0.94563 0.87999 1.05159 1.61504 1.25625 1.03020 1.35538 1.22162 0.97683 1.01324 0.89024 1.19588 0.92344 0.86310 0.93857 0.97822 1.22156 0.99584 1.00155 0.98326 1.21246 0.94451 0.91205 1.48267 0.94877 1.25898 1.02735 0.95723 0.94577 1.70064 1.36564 1.00614 1.52026 0.85749 0.79909 0.76885 0.79208 1.18869 1.16385 1.22825 0.89605 0.88798 0.90988 0.80918 0.81786 0.82224 0.72734 0.89860 0.85323 0.96198 0.91548 0.93627 0.90486 0.94188 0.93183 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.59 71.24 0.68 -0.23 16 2 C -0.17 -2.89 5.91 -19.64 -0.12 -3.01 16 3 C -0.05 -0.73 9.85 22.44 0.22 -0.51 16 4 C -0.19 -3.09 10.11 22.38 0.23 -2.86 16 5 C 0.10 2.32 11.18 84.65 0.95 3.27 16 6 N -0.53 -16.92 7.87 -193.04 -1.52 -18.44 16 7 C 0.33 8.60 7.41 132.90 0.98 9.58 16 8 N -0.65 -15.64 5.30 -308.46 -1.63 -17.27 16 9 C 0.50 16.55 7.49 87.66 0.66 17.20 16 10 O -0.50 -21.62 12.58 -3.01 -0.04 -21.66 16 11 C 0.03 1.00 5.26 85.56 0.45 1.45 16 12 N -0.53 -23.05 4.36 -906.01 -3.95 -27.01 16 13 C 0.05 2.06 8.88 127.69 1.13 3.19 16 14 C 0.19 8.70 1.65 44.17 0.07 8.77 16 15 H 0.00 0.20 7.20 -2.38 -0.02 0.18 16 16 C -0.15 -5.84 8.47 71.98 0.61 -5.23 16 17 C -0.51 -30.17 8.51 25.60 0.22 -29.95 16 18 H 0.03 2.23 6.64 -2.91 -0.02 2.21 16 19 C 0.01 0.43 5.45 84.66 0.46 0.89 16 20 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 21 Si 0.96 44.18 24.37 68.60 1.67 45.85 16 22 H -0.26 -11.45 6.87 99.48 0.68 -10.76 16 23 H -0.24 -9.90 6.53 99.48 0.65 -9.25 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 25 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 27 H 0.07 0.51 6.56 -2.39 -0.02 0.50 16 28 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 29 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 30 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 31 H 0.43 6.31 6.68 -92.71 -0.62 5.69 16 32 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 33 H 0.13 3.30 5.83 -2.39 -0.01 3.29 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.07 2.92 5.82 -2.38 -0.01 2.90 16 36 H 0.04 2.33 6.23 -2.39 -0.01 2.31 16 37 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 38 H 0.04 1.64 3.27 -2.39 -0.01 1.63 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -83.71 316.27 1.74 -81.97 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.36 Total: 14.59 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 6.55 Total: 2.57 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -6.81 Total: -123.32 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.04 Total: -21.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -83.71 1.74 -81.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.675 kcal (2) G-P(sol) polarization free energy of solvation -83.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds