Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38409 * 120.44795 * 2 1 4 4 C 1.38794 * 118.49401 * 180.02562 * 3 2 1 5 5 C 1.38117 * 119.30867 * 359.97438 * 4 3 2 6 6 N 1.31904 * 120.84841 * 359.97438 * 5 4 3 7 7 C 1.32374 * 121.63585 * 0.02562 * 6 5 4 8 8 N 1.39410 * 119.69485 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99965 * 359.97438 * 8 7 6 10 10 O 1.21280 * 119.99687 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99996 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.46705 * 180.02562 * 11 9 8 13 13 C 1.46903 * 111.00042 * 293.95173 * 12 11 9 14 14 C 1.46902 * 110.99701 * 170.00010 * 12 11 9 15 15 H 1.08997 * 109.47480 * 310.00187 * 14 12 11 16 16 C 1.53007 * 109.46974 * 70.00005 * 14 12 11 17 17 C 1.50704 * 109.47054 * 189.99514 * 14 12 11 18 18 H 1.07995 * 120.00132 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99720 * 179.97438 * 17 14 12 20 20 N 1.31509 * 120.00209 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00017 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47164 * 59.99489 * 21 19 17 23 23 H 1.48496 * 109.47538 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47022 * 300.00179 * 21 19 17 25 25 H 1.09004 * 109.47028 * 269.97399 * 1 2 3 26 26 H 1.08996 * 109.47345 * 29.97364 * 1 2 3 27 27 H 1.08997 * 109.47269 * 149.97660 * 1 2 3 28 28 H 1.08005 * 120.75125 * 0.04685 * 3 2 1 29 29 H 1.07998 * 120.34387 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.57164 * 180.28091 * 5 4 3 31 31 H 0.96992 * 120.00233 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.46721 * 299.99958 * 11 9 8 33 33 H 1.08998 * 109.46883 * 60.00317 * 11 9 8 34 34 H 1.08994 * 109.47221 * 60.00559 * 13 12 11 35 35 H 1.09004 * 109.46936 * 180.02562 * 13 12 11 36 36 H 1.08997 * 109.47095 * 300.00123 * 13 12 11 37 37 H 1.08999 * 109.46797 * 180.02562 * 16 14 12 38 38 H 1.08995 * 109.46812 * 299.99928 * 16 14 12 39 39 H 1.08995 * 109.47186 * 60.00233 * 16 14 12 40 40 H 0.97005 * 120.00669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5955 1.1459 -0.0005 5 6 4.2301 -0.0808 -0.0005 6 7 3.5351 -1.2019 0.0005 7 6 2.2114 -1.1982 0.0011 8 7 1.5174 -2.4073 0.0016 9 6 2.1942 -3.5728 0.0010 10 8 3.4070 -3.5697 0.0005 11 6 1.4440 -4.8798 0.0011 12 7 2.4015 -5.9939 0.0010 13 6 3.1668 -6.0302 -1.2524 14 6 1.7203 -7.2734 0.2392 15 1 1.0767 -7.1851 1.1144 16 6 0.8729 -7.6352 -0.9824 17 6 2.7458 -8.3520 0.4764 18 1 3.7982 -8.1109 0.4530 19 6 2.3403 -9.6462 0.7243 20 7 1.0586 -9.9395 0.7542 21 14 3.6113 -10.9830 1.0190 22 1 4.4337 -10.6314 2.2044 23 1 2.9227 -12.2765 1.2596 24 1 4.4881 -11.1039 -0.1734 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6880 2.1397 0.0008 29 1 4.1725 2.0588 -0.0001 30 1 5.3093 -0.1226 0.0037 31 1 0.5475 -2.4098 0.0016 32 1 0.8179 -4.9393 0.8913 33 1 0.8172 -4.9389 -0.8887 34 1 3.7170 -5.0967 -1.3693 35 1 3.8678 -6.8646 -1.2260 36 1 2.4833 -6.1568 -2.0919 37 1 0.3671 -8.5844 -0.8055 38 1 0.1313 -6.8551 -1.1540 39 1 1.5164 -7.7236 -1.8577 40 1 0.7732 -10.8501 0.9283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878189155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = 28.196714 kcal Electronic energy + Delta-G solvation = -21382.925399 eV Core-core repulsion = 18198.822510 eV Total energy + Delta-G solvation = -3184.102889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85190 -39.03288 -36.69273 -34.92040 -33.57137 -32.67226 -30.94331 -29.10390 -27.69408 -27.05924 -25.20454 -24.45551 -23.20925 -22.12069 -20.39294 -19.27389 -18.07199 -17.06118 -16.08446 -15.65440 -15.59490 -15.49342 -14.77368 -14.44114 -14.33880 -13.99373 -13.83707 -13.24954 -13.12093 -12.87020 -12.84787 -12.56235 -12.42737 -11.80563 -11.57743 -11.09020 -11.00445 -10.80492 -10.70036 -10.63638 -10.39286 -10.09152 -9.99047 -9.73217 -9.68308 -8.98123 -8.75003 -8.36060 -8.18894 -7.14077 -5.99247 -4.01867 1.01971 1.24833 2.91632 2.98951 3.36819 3.39853 3.44643 3.86626 4.33485 4.45509 4.57920 4.71568 4.84915 4.95378 5.11965 5.20543 5.25707 5.31850 5.33317 5.50112 5.74448 5.75425 5.81223 5.90716 6.06884 6.25264 6.37899 6.44495 6.67978 6.76257 6.81658 7.00437 7.08703 7.22920 7.43718 7.70502 7.86141 8.06788 8.14135 8.37128 8.52776 8.60525 9.04423 9.62923 11.08187 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.003568 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.109681 B = 7845.472281 C = 8333.961698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.183 4.183 3 C -0.051 4.051 4 C -0.212 4.212 5 C 0.128 3.872 6 N -0.473 5.473 7 C 0.371 3.629 8 N -0.669 5.669 9 C 0.499 3.501 10 O -0.446 6.446 11 C 0.039 3.961 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.211 3.789 15 H 0.039 0.961 16 C -0.173 4.173 17 C -0.496 4.496 18 H 0.064 0.936 19 C 0.058 3.942 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.011 0.989 37 H 0.090 0.910 38 H 0.005 0.995 39 H 0.033 0.967 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 21.434 -2.779 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.189 4.189 3 C -0.077 4.077 4 C -0.233 4.233 5 C -0.030 4.030 6 N -0.187 5.187 7 C 0.139 3.861 8 N -0.318 5.318 9 C 0.285 3.715 10 O -0.312 6.312 11 C -0.093 4.093 12 N -0.240 5.240 13 C -0.118 4.118 14 C 0.105 3.895 15 H 0.057 0.943 16 C -0.232 4.232 17 C -0.535 4.535 18 H 0.082 0.918 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.174 0.826 31 H 0.251 0.749 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.108 0.892 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.663 20.359 -2.352 20.562 hybrid contribution -0.966 -0.037 -0.511 1.093 sum -2.629 20.323 -2.863 20.691 Atomic orbital electron populations 1.20653 0.90268 1.02947 1.02598 1.20285 0.97193 0.92463 1.08963 1.21213 0.94015 0.97210 0.95304 1.22001 0.95151 0.99534 1.06654 1.22698 1.00253 0.86850 0.93220 1.67759 1.05516 1.30767 1.14627 1.18422 0.88863 0.85290 0.93535 1.44028 1.10506 1.03881 1.73335 1.21401 0.89100 0.84689 0.76319 1.90756 1.13252 1.85971 1.41199 1.21937 0.95176 0.89725 1.02459 1.62100 1.24126 1.03305 1.34477 1.22377 0.97747 1.02372 0.89322 1.19379 0.92719 0.83856 0.93506 0.94281 1.22431 0.98926 1.02158 0.99723 1.21069 0.93248 0.91886 1.47292 0.91805 1.24912 0.95363 0.98548 0.95476 1.69866 1.13888 1.19759 1.50204 0.86550 0.81350 0.80608 0.78849 1.20181 1.21452 1.20337 0.90855 0.90977 0.91720 0.84877 0.85031 0.82645 0.74935 0.88421 0.92671 0.91993 0.90792 0.97083 0.89183 0.97602 0.94801 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.59 36.00 0.35 -0.40 16 2 C -0.18 -1.91 5.91 -104.28 -0.62 -2.53 16 3 C -0.05 -0.46 9.85 -39.31 -0.39 -0.85 16 4 C -0.21 -2.01 10.11 -39.42 -0.40 -2.41 16 5 C 0.13 1.58 11.18 -17.56 -0.20 1.39 16 6 N -0.47 -7.64 7.87 -12.37 -0.10 -7.74 16 7 C 0.37 5.21 7.41 -154.70 -1.15 4.06 16 8 N -0.67 -9.04 5.30 -11.43 -0.06 -9.10 16 9 C 0.50 8.76 7.52 -10.98 -0.08 8.68 16 10 O -0.45 -9.60 12.55 5.56 0.07 -9.53 16 11 C 0.04 0.70 5.02 -4.98 -0.02 0.67 16 12 N -0.52 -11.59 4.44 -237.72 -1.06 -12.65 16 13 C 0.03 0.65 8.34 60.07 0.50 1.15 16 14 C 0.21 5.31 2.31 -68.86 -0.16 5.15 16 15 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 16 C -0.17 -4.10 8.22 37.16 0.31 -3.80 16 17 C -0.50 -13.83 7.91 -34.44 -0.27 -14.10 16 18 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 21 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 29 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.41 3.98 6.68 -40.82 -0.27 3.71 16 32 H 0.10 1.60 7.93 -51.93 -0.41 1.19 16 33 H 0.06 0.90 7.06 -51.93 -0.37 0.53 16 34 H 0.06 1.32 5.88 -51.93 -0.31 1.02 16 35 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 36 H 0.01 0.22 6.46 -51.93 -0.34 -0.11 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.00 0.11 6.91 -51.93 -0.36 -0.25 16 39 H 0.03 0.79 6.42 -51.93 -0.33 0.46 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -33.68 321.52 -8.34 -42.03 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.42 Total: 1.78 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.23 Total: -1.48 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.59 Total: -54.33 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.68 -8.34 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.224 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds