Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38409 * 120.44795 * 2 1 4 4 C 1.38794 * 118.49401 * 180.02562 * 3 2 1 5 5 C 1.38117 * 119.30867 * 359.97438 * 4 3 2 6 6 N 1.31904 * 120.84841 * 359.97438 * 5 4 3 7 7 C 1.32374 * 121.63585 * 0.02562 * 6 5 4 8 8 N 1.39410 * 119.69485 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99965 * 359.97438 * 8 7 6 10 10 O 1.21280 * 119.99687 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99996 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.46705 * 180.02562 * 11 9 8 13 13 C 1.46903 * 111.00042 * 293.95173 * 12 11 9 14 14 C 1.46902 * 110.99701 * 170.00010 * 12 11 9 15 15 H 1.08997 * 109.47480 * 310.00187 * 14 12 11 16 16 C 1.53007 * 109.46974 * 70.00005 * 14 12 11 17 17 C 1.50704 * 109.47054 * 189.99514 * 14 12 11 18 18 H 1.07995 * 120.00132 * 0.02562 * 17 14 12 19 19 C 1.37879 * 119.99720 * 179.97438 * 17 14 12 20 20 N 1.31509 * 120.00209 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00017 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47164 * 59.99489 * 21 19 17 23 23 H 1.48496 * 109.47538 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47022 * 300.00179 * 21 19 17 25 25 H 1.09004 * 109.47028 * 269.97399 * 1 2 3 26 26 H 1.08996 * 109.47345 * 29.97364 * 1 2 3 27 27 H 1.08997 * 109.47269 * 149.97660 * 1 2 3 28 28 H 1.08005 * 120.75125 * 0.04685 * 3 2 1 29 29 H 1.07998 * 120.34387 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.57164 * 180.28091 * 5 4 3 31 31 H 0.96992 * 120.00233 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.46721 * 299.99958 * 11 9 8 33 33 H 1.08998 * 109.46883 * 60.00317 * 11 9 8 34 34 H 1.08994 * 109.47221 * 60.00559 * 13 12 11 35 35 H 1.09004 * 109.46936 * 180.02562 * 13 12 11 36 36 H 1.08997 * 109.47095 * 300.00123 * 13 12 11 37 37 H 1.08999 * 109.46797 * 180.02562 * 16 14 12 38 38 H 1.08995 * 109.46812 * 299.99928 * 16 14 12 39 39 H 1.08995 * 109.47186 * 60.00233 * 16 14 12 40 40 H 0.97005 * 120.00669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5955 1.1459 -0.0005 5 6 4.2301 -0.0808 -0.0005 6 7 3.5351 -1.2019 0.0005 7 6 2.2114 -1.1982 0.0011 8 7 1.5174 -2.4073 0.0016 9 6 2.1942 -3.5728 0.0010 10 8 3.4070 -3.5697 0.0005 11 6 1.4440 -4.8798 0.0011 12 7 2.4015 -5.9939 0.0010 13 6 3.1668 -6.0302 -1.2524 14 6 1.7203 -7.2734 0.2392 15 1 1.0767 -7.1851 1.1144 16 6 0.8729 -7.6352 -0.9824 17 6 2.7458 -8.3520 0.4764 18 1 3.7982 -8.1109 0.4530 19 6 2.3403 -9.6462 0.7243 20 7 1.0586 -9.9395 0.7542 21 14 3.6113 -10.9830 1.0190 22 1 4.4337 -10.6314 2.2044 23 1 2.9227 -12.2765 1.2596 24 1 4.4881 -11.1039 -0.1734 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6880 2.1397 0.0008 29 1 4.1725 2.0588 -0.0001 30 1 5.3093 -0.1226 0.0037 31 1 0.5475 -2.4098 0.0016 32 1 0.8179 -4.9393 0.8913 33 1 0.8172 -4.9389 -0.8887 34 1 3.7170 -5.0967 -1.3693 35 1 3.8678 -6.8646 -1.2260 36 1 2.4833 -6.1568 -2.0919 37 1 0.3671 -8.5844 -0.8055 38 1 0.1313 -6.8551 -1.1540 39 1 1.5164 -7.7236 -1.8577 40 1 0.7732 -10.8501 0.9283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878189155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = 5.207633 kcal Electronic energy + Delta-G solvation = -21383.922281 eV Core-core repulsion = 18198.822510 eV Total energy + Delta-G solvation = -3185.099771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86330 -40.28538 -38.37328 -36.05338 -34.71096 -34.38357 -31.97008 -30.83626 -29.07097 -27.99237 -27.26039 -25.99799 -24.39601 -22.96319 -21.75658 -20.93236 -19.12629 -18.44836 -17.97259 -16.97606 -16.73394 -16.48691 -16.34863 -15.86741 -15.51260 -15.47449 -15.00565 -14.69738 -14.35445 -14.22026 -13.82779 -13.60441 -13.44766 -13.33737 -12.89607 -12.81625 -12.61121 -12.55160 -12.45425 -12.30535 -12.05154 -11.92211 -11.68917 -11.11595 -10.88999 -10.52675 -10.48028 -9.93490 -9.11938 -8.85937 -8.11032 -6.20388 0.15021 0.44048 1.42792 1.44126 1.51940 1.72604 1.84367 2.44208 2.97253 3.18178 3.32981 3.51656 3.85510 3.90718 4.10336 4.19840 4.32463 4.33333 4.40078 4.59185 4.64241 4.68984 4.81262 4.82286 4.85331 4.91635 5.11486 5.13955 5.20367 5.22828 5.31867 5.41147 5.50267 5.70550 5.79681 5.89931 6.15037 6.24779 6.45392 6.68404 6.90686 7.08922 7.41808 7.48225 8.94770 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.003568 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.109681 B = 7845.472281 C = 8333.961698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.172 4.172 3 C -0.053 4.053 4 C -0.194 4.194 5 C 0.097 3.903 6 N -0.525 5.525 7 C 0.331 3.669 8 N -0.653 5.653 9 C 0.504 3.496 10 O -0.496 6.496 11 C 0.040 3.960 12 N -0.537 5.537 13 C 0.044 3.956 14 C 0.217 3.783 15 H 0.018 0.982 16 C -0.159 4.159 17 C -0.518 4.518 18 H 0.047 0.953 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.430 0.570 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 23.778 -3.073 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C -0.079 4.079 4 C -0.215 4.215 5 C -0.060 4.060 6 N -0.240 5.240 7 C 0.100 3.900 8 N -0.304 5.304 9 C 0.290 3.710 10 O -0.366 6.366 11 C -0.091 4.091 12 N -0.261 5.261 13 C -0.104 4.104 14 C 0.110 3.890 15 H 0.035 0.965 16 C -0.218 4.218 17 C -0.557 4.557 18 H 0.066 0.934 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.205 1.205 24 H -0.200 1.200 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.191 0.809 29 H 0.183 0.817 30 H 0.180 0.820 31 H 0.271 0.729 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.999 22.759 -2.651 23.108 hybrid contribution -0.578 -0.576 -0.406 0.912 sum -3.578 22.183 -3.056 22.676 Atomic orbital electron populations 1.20779 0.87647 1.04397 1.03733 1.20686 0.99039 0.91445 1.06565 1.21754 0.93936 0.98295 0.93910 1.22378 0.95919 0.99493 1.03675 1.22982 1.00839 0.87390 0.94808 1.67571 1.07242 1.33171 1.16037 1.18721 0.88845 0.86180 0.96272 1.43652 1.11203 1.02984 1.72552 1.21238 0.88440 0.85582 0.75707 1.90737 1.15120 1.86777 1.43994 1.21987 0.94579 0.88468 1.04114 1.61894 1.25525 1.03485 1.35185 1.22193 0.97456 1.01324 0.89458 1.19137 0.91962 0.84653 0.93205 0.96457 1.22217 0.99010 1.01794 0.98823 1.21315 0.93154 0.93317 1.47894 0.93430 1.25584 0.97118 1.00348 0.95199 1.69965 1.15080 1.20213 1.50410 0.85655 0.79242 0.78353 0.78619 1.20213 1.20516 1.19957 0.89714 0.88691 0.91176 0.80894 0.81677 0.82045 0.72888 0.87050 0.90415 0.91993 0.93062 0.95987 0.91674 0.94576 0.95123 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.59 71.23 0.68 -0.43 16 2 C -0.17 -3.13 5.91 -19.64 -0.12 -3.25 16 3 C -0.05 -0.77 9.85 22.44 0.22 -0.55 16 4 C -0.19 -3.17 10.11 22.37 0.23 -2.95 16 5 C 0.10 2.38 11.18 84.65 0.95 3.32 16 6 N -0.53 -17.30 7.87 -193.04 -1.52 -18.82 16 7 C 0.33 9.07 7.41 132.90 0.98 10.05 16 8 N -0.65 -17.19 5.30 -308.46 -1.64 -18.82 16 9 C 0.50 17.79 7.52 87.66 0.66 18.44 16 10 O -0.50 -22.10 12.55 -3.03 -0.04 -22.14 16 11 C 0.04 1.40 5.02 85.56 0.43 1.83 16 12 N -0.54 -24.44 4.44 -906.02 -4.02 -28.46 16 13 C 0.04 1.93 8.34 127.69 1.06 3.00 16 14 C 0.22 11.06 2.31 44.17 0.10 11.16 16 15 H 0.02 0.96 7.93 -2.39 -0.02 0.94 16 16 C -0.16 -7.49 8.22 71.98 0.59 -6.90 16 17 C -0.52 -29.53 7.91 25.60 0.20 -29.32 16 18 H 0.05 2.80 7.12 -2.91 -0.02 2.78 16 19 C 0.02 0.91 5.30 84.66 0.45 1.36 16 20 N -0.92 -52.39 11.32 21.45 0.24 -52.15 16 21 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 27 H 0.07 0.65 6.57 -2.39 -0.02 0.63 16 28 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.43 7.57 6.68 -92.71 -0.62 6.95 16 32 H 0.11 3.55 7.93 -2.39 -0.02 3.53 16 33 H 0.08 2.38 7.06 -2.39 -0.02 2.36 16 34 H 0.06 2.73 5.88 -2.39 -0.01 2.72 16 35 H 0.05 2.44 6.76 -2.38 -0.02 2.42 16 36 H 0.02 0.89 6.46 -2.39 -0.02 0.88 16 37 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 38 H 0.04 1.43 6.91 -2.39 -0.02 1.42 16 39 H 0.03 1.42 6.42 -2.39 -0.02 1.40 16 40 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -75.61 321.52 1.94 -73.67 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.44 Total: 14.01 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.44 Total: 5.77 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -6.93 Total: -118.26 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.61 1.94 -73.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.881 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds