Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32165 * 120.53537 * 2 1 4 4 C 1.31857 * 120.96616 * 180.02562 * 3 2 1 5 5 C 1.50701 * 118.95241 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46771 * 119.99734 * 5 4 3 7 7 C 1.53000 * 109.47080 * 240.00019 * 5 4 3 8 8 N 1.31881 * 122.09721 * 0.27741 * 4 3 2 9 9 C 1.32137 * 120.96613 * 359.43657 * 8 4 3 10 10 C 1.39923 * 120.53886 * 180.02562 * 2 1 3 11 11 C 1.47829 * 120.94188 * 0.02562 * 10 2 1 12 12 O 1.21559 * 119.99569 * 6.10539 * 11 10 2 13 13 N 1.34775 * 120.00651 * 186.10841 * 11 10 2 14 14 C 1.46493 * 120.00500 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46867 * 35.00548 * 14 13 11 16 16 C 1.53002 * 109.47543 * 275.00353 * 14 13 11 17 17 C 1.50693 * 109.47476 * 155.00109 * 14 13 11 18 18 H 1.08005 * 120.00205 * 35.31582 * 17 14 13 19 19 C 1.37881 * 120.00717 * 215.32157 * 17 14 13 20 20 N 1.31512 * 120.00577 * 185.75636 * 19 17 14 21 21 Si 1.86797 * 119.99384 * 5.74869 * 19 17 14 22 22 H 1.48499 * 109.47084 * 85.07851 * 21 19 17 23 23 H 1.48507 * 109.47273 * 205.07279 * 21 19 17 24 24 H 1.48497 * 109.47493 * 325.07666 * 21 19 17 25 25 H 1.09007 * 109.47203 * 96.37099 * 1 2 3 26 26 H 1.09001 * 109.47308 * 216.37000 * 1 2 3 27 27 H 1.09001 * 109.47286 * 336.37317 * 1 2 3 28 28 H 1.09000 * 109.47224 * 0.02562 * 5 4 3 29 29 H 1.09001 * 109.46506 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.46864 * 60.00959 * 6 5 4 31 31 H 1.08999 * 109.47447 * 299.99880 * 6 5 4 32 32 H 1.08994 * 109.47480 * 60.00335 * 7 5 4 33 33 H 1.09000 * 109.46945 * 180.02562 * 7 5 4 34 34 H 1.08997 * 109.47335 * 299.99611 * 7 5 4 35 35 H 1.07998 * 120.54557 * 180.25436 * 9 8 4 36 36 H 0.97001 * 119.99735 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.46843 * 65.34983 * 16 14 13 38 38 H 1.08993 * 109.47053 * 185.34257 * 16 14 13 39 39 H 1.08997 * 109.47102 * 305.34848 * 16 14 13 40 40 H 0.96995 * 119.99940 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1784 1.1384 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2166 2.4724 -0.0011 6 6 5.0942 2.5763 1.2479 7 6 5.0933 2.5758 -1.2507 8 7 4.2061 0.0364 -0.0064 9 6 3.6164 -1.1461 -0.0010 10 6 2.2179 -1.2051 -0.0005 11 6 1.5121 -2.5040 -0.0017 12 8 0.3022 -2.5381 -0.1141 13 7 2.2099 -3.6504 0.1220 14 6 1.5104 -4.9375 0.1214 15 1 0.6566 -4.8867 -0.5543 16 6 1.0225 -5.2536 1.5367 17 6 2.4515 -6.0206 -0.3390 18 1 3.4978 -5.9753 -0.0746 19 6 1.9773 -7.0695 -1.0980 20 7 2.7718 -8.0717 -1.4043 21 14 0.2059 -7.0671 -1.6909 22 1 0.1085 -6.2960 -2.9562 23 1 -0.2390 -8.4641 -1.9271 24 1 -0.6601 -6.4393 -0.6607 25 1 -0.3634 -0.1140 -1.0214 26 1 -0.3634 -0.8275 0.6094 27 1 -0.3634 0.9415 0.4119 28 1 3.4871 3.2823 -0.0005 29 1 5.6150 3.5339 1.2472 30 1 5.8237 1.7665 1.2477 31 1 4.4696 2.5027 2.1381 32 1 4.4681 2.5018 -2.1404 33 1 5.6141 3.5333 -1.2508 34 1 5.8228 1.7660 -1.2508 35 1 4.2039 -2.0524 -0.0018 36 1 3.1754 -3.6232 0.2122 37 1 0.2702 -4.5228 1.8333 38 1 0.5864 -6.2523 1.5561 39 1 1.8634 -5.2109 2.2289 40 1 2.4380 -8.8097 -1.9379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878536308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = -7.413208 kcal Electronic energy + Delta-G solvation = -21403.326890 eV Core-core repulsion = 18217.679838 eV Total energy + Delta-G solvation = -3185.647051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35297 -38.98090 -35.91047 -35.15270 -34.19810 -32.52189 -31.82666 -30.00138 -28.16785 -27.36511 -25.43277 -25.14939 -23.35981 -21.73986 -20.39106 -19.84979 -18.05862 -17.81150 -16.51551 -16.10696 -15.48312 -15.24857 -14.47009 -14.45532 -14.17918 -14.13700 -13.42313 -13.27348 -13.14863 -12.74352 -12.58403 -12.51404 -12.34368 -12.28375 -11.95590 -11.51399 -11.39659 -11.25533 -11.15603 -11.12543 -10.91391 -10.66681 -10.53980 -9.93142 -9.41853 -9.33785 -9.26324 -9.19134 -8.76095 -8.23238 -6.29972 -4.34576 0.50836 1.02264 3.14755 3.21880 3.30029 3.36273 3.60849 3.78065 3.84931 3.99524 4.26629 4.41001 4.77732 4.81101 4.89544 4.91797 5.03860 5.24718 5.36577 5.44182 5.52794 5.62223 5.64952 5.72510 5.75752 5.86322 6.01903 6.04208 6.22038 6.24046 6.40591 6.47558 6.59892 6.82813 6.93309 7.08240 7.26517 7.43564 7.97955 8.03343 8.42490 8.67983 8.76741 9.31175 10.81508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.004213 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.354237 B = 6645.180180 C = 7108.234787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.230 3.770 3 N -0.526 5.526 4 C 0.337 3.663 5 C -0.027 4.027 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.521 5.521 9 C 0.185 3.815 10 C -0.241 4.241 11 C 0.553 3.447 12 O -0.544 6.544 13 N -0.694 5.694 14 C 0.231 3.769 15 H 0.053 0.947 16 C -0.148 4.148 17 C -0.534 4.534 18 H 0.079 0.921 19 C 0.083 3.917 20 N -0.886 5.886 21 Si 0.874 3.126 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.259 1.259 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.175 0.825 36 H 0.392 0.608 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 18.614 3.344 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.084 3.916 3 N -0.241 5.241 4 C 0.070 3.930 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.235 5.235 9 C 0.018 3.982 10 C -0.249 4.249 11 C 0.338 3.662 12 O -0.425 6.425 13 N -0.342 5.342 14 C 0.129 3.871 15 H 0.071 0.929 16 C -0.207 4.207 17 C -0.572 4.572 18 H 0.097 0.903 19 C -0.122 4.122 20 N -0.522 5.522 21 Si 0.700 3.300 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.184 1.184 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.192 0.808 36 H 0.226 0.774 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.836 19.205 3.160 19.550 hybrid contribution -0.724 -1.078 -0.397 1.358 sum 1.112 18.127 2.763 18.370 Atomic orbital electron populations 1.21064 0.86647 1.04116 1.04756 1.21979 0.98059 0.86431 0.85126 1.68218 1.09456 1.29969 1.16416 1.23329 0.86586 0.94695 0.88412 1.19996 0.96958 0.90384 0.97431 1.21794 0.99576 1.02691 0.95803 1.21795 0.99604 1.02690 0.95813 1.68168 1.41242 0.98351 1.15729 1.23561 0.91151 0.96366 0.87106 1.21887 0.96255 0.96995 1.09716 1.17835 0.87167 0.83293 0.77945 1.90681 1.13438 1.86993 1.51351 1.46657 1.10586 1.06397 1.70538 1.19211 0.93849 0.79874 0.94130 0.92873 1.22226 0.99382 1.00283 0.98780 1.20982 0.96661 1.05307 1.34232 0.90254 1.24938 0.97748 0.94936 0.94613 1.69875 1.36264 1.08842 1.37183 0.86896 0.85341 0.77409 0.80337 1.19813 1.21100 1.18381 0.89300 0.87312 0.91053 0.88638 0.91603 0.91271 0.92780 0.92766 0.91603 0.91244 0.80834 0.77394 0.95123 0.92442 0.93585 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.99 36.00 0.32 -1.19 16 2 C 0.23 3.55 6.86 -81.82 -0.56 2.99 16 3 N -0.53 -7.75 10.22 -6.68 -0.07 -7.82 16 4 C 0.34 4.57 6.34 -157.07 -1.00 3.57 16 5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.58 16 6 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 7 C -0.14 -1.26 9.08 37.16 0.34 -0.93 16 8 N -0.52 -7.28 9.77 -10.39 -0.10 -7.38 16 9 C 0.19 2.62 10.80 -16.77 -0.18 2.44 16 10 C -0.24 -3.85 5.91 -104.69 -0.62 -4.47 16 11 C 0.55 10.37 7.69 -12.34 -0.09 10.27 16 12 O -0.54 -11.45 13.20 5.31 0.07 -11.38 16 13 N -0.69 -13.39 5.02 -55.89 -0.28 -13.67 16 14 C 0.23 5.28 2.24 -69.09 -0.16 5.12 16 15 H 0.05 1.32 4.67 -51.93 -0.24 1.08 16 16 C -0.15 -3.11 9.47 37.16 0.35 -2.76 16 17 C -0.53 -13.87 9.04 -34.44 -0.31 -14.18 16 18 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 21 Si 0.87 20.98 27.02 -169.99 -4.59 16.38 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.26 -6.10 6.77 56.52 0.38 -5.72 16 25 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 26 H 0.11 1.67 5.97 -51.93 -0.31 1.36 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 35 H 0.17 2.07 6.58 -52.49 -0.35 1.73 16 36 H 0.39 6.58 6.77 -40.82 -0.28 6.31 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -30.25 332.15 -6.97 -37.21 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.81 Total: 4.80 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.96 Total: 1.56 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.32 Total: -53.59 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.59 Total: 16.38 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.25 -6.97 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.800 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds