Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32165 * 120.53537 * 2 1 4 4 C 1.31857 * 120.96616 * 180.02562 * 3 2 1 5 5 C 1.50701 * 118.95241 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46771 * 119.99734 * 5 4 3 7 7 C 1.53000 * 109.47080 * 240.00019 * 5 4 3 8 8 N 1.31881 * 122.09721 * 0.27741 * 4 3 2 9 9 C 1.32137 * 120.96613 * 359.43657 * 8 4 3 10 10 C 1.39923 * 120.53886 * 180.02562 * 2 1 3 11 11 C 1.47829 * 120.94188 * 0.02562 * 10 2 1 12 12 O 1.21559 * 119.99569 * 6.10539 * 11 10 2 13 13 N 1.34775 * 120.00651 * 186.10841 * 11 10 2 14 14 C 1.46493 * 120.00500 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46867 * 35.00548 * 14 13 11 16 16 C 1.53002 * 109.47543 * 275.00353 * 14 13 11 17 17 C 1.50693 * 109.47476 * 155.00109 * 14 13 11 18 18 H 1.08005 * 120.00205 * 35.31582 * 17 14 13 19 19 C 1.37881 * 120.00717 * 215.32157 * 17 14 13 20 20 N 1.31512 * 120.00577 * 185.75636 * 19 17 14 21 21 Si 1.86797 * 119.99384 * 5.74869 * 19 17 14 22 22 H 1.48499 * 109.47084 * 85.07851 * 21 19 17 23 23 H 1.48507 * 109.47273 * 205.07279 * 21 19 17 24 24 H 1.48497 * 109.47493 * 325.07666 * 21 19 17 25 25 H 1.09007 * 109.47203 * 96.37099 * 1 2 3 26 26 H 1.09001 * 109.47308 * 216.37000 * 1 2 3 27 27 H 1.09001 * 109.47286 * 336.37317 * 1 2 3 28 28 H 1.09000 * 109.47224 * 0.02562 * 5 4 3 29 29 H 1.09001 * 109.46506 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.46864 * 60.00959 * 6 5 4 31 31 H 1.08999 * 109.47447 * 299.99880 * 6 5 4 32 32 H 1.08994 * 109.47480 * 60.00335 * 7 5 4 33 33 H 1.09000 * 109.46945 * 180.02562 * 7 5 4 34 34 H 1.08997 * 109.47335 * 299.99611 * 7 5 4 35 35 H 1.07998 * 120.54557 * 180.25436 * 9 8 4 36 36 H 0.97001 * 119.99735 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.46843 * 65.34983 * 16 14 13 38 38 H 1.08993 * 109.47053 * 185.34257 * 16 14 13 39 39 H 1.08997 * 109.47102 * 305.34848 * 16 14 13 40 40 H 0.96995 * 119.99940 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1784 1.1384 0.0000 4 6 3.4970 1.1483 -0.0005 5 6 4.2166 2.4724 -0.0011 6 6 5.0942 2.5763 1.2479 7 6 5.0933 2.5758 -1.2507 8 7 4.2061 0.0364 -0.0064 9 6 3.6164 -1.1461 -0.0010 10 6 2.2179 -1.2051 -0.0005 11 6 1.5121 -2.5040 -0.0017 12 8 0.3022 -2.5381 -0.1141 13 7 2.2099 -3.6504 0.1220 14 6 1.5104 -4.9375 0.1214 15 1 0.6566 -4.8867 -0.5543 16 6 1.0225 -5.2536 1.5367 17 6 2.4515 -6.0206 -0.3390 18 1 3.4978 -5.9753 -0.0746 19 6 1.9773 -7.0695 -1.0980 20 7 2.7718 -8.0717 -1.4043 21 14 0.2059 -7.0671 -1.6909 22 1 0.1085 -6.2960 -2.9562 23 1 -0.2390 -8.4641 -1.9271 24 1 -0.6601 -6.4393 -0.6607 25 1 -0.3634 -0.1140 -1.0214 26 1 -0.3634 -0.8275 0.6094 27 1 -0.3634 0.9415 0.4119 28 1 3.4871 3.2823 -0.0005 29 1 5.6150 3.5339 1.2472 30 1 5.8237 1.7665 1.2477 31 1 4.4696 2.5027 2.1381 32 1 4.4681 2.5018 -2.1404 33 1 5.6141 3.5333 -1.2508 34 1 5.8228 1.7660 -1.2508 35 1 4.2039 -2.0524 -0.0018 36 1 3.1754 -3.6232 0.2122 37 1 0.2702 -4.5228 1.8333 38 1 0.5864 -6.2523 1.5561 39 1 1.8634 -5.2109 2.2289 40 1 2.4380 -8.8097 -1.9379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878536308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -26.901409 kcal Electronic energy + Delta-G solvation = -21404.171962 eV Core-core repulsion = 18217.679838 eV Total energy + Delta-G solvation = -3186.492123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51009 -40.46626 -37.08384 -36.55950 -35.42813 -34.38094 -33.08708 -31.56635 -29.40479 -28.05054 -27.34061 -26.32061 -24.45143 -23.27386 -21.59566 -21.30754 -19.69515 -19.02095 -18.20208 -17.28042 -16.91099 -16.67169 -16.14853 -15.58607 -15.29986 -15.21733 -14.95737 -14.54043 -14.40951 -14.27933 -14.13724 -13.66720 -13.47746 -13.28894 -13.07244 -12.95806 -12.89184 -12.80656 -12.45858 -12.21311 -12.16037 -11.87987 -11.87149 -11.66393 -11.24862 -10.84288 -10.69667 -10.59906 -10.42456 -9.86451 -8.39258 -6.46052 -0.66999 -0.12254 1.30398 1.35626 1.45153 1.79397 2.21345 2.27362 2.62595 2.69116 2.89570 3.02148 3.27968 3.64927 3.83576 3.90486 4.05311 4.16898 4.43276 4.44483 4.51679 4.65165 4.73579 4.75853 4.81832 4.82761 4.86880 4.94932 5.00504 5.06771 5.12608 5.29509 5.33261 5.35739 5.42784 5.44714 5.67277 5.78778 6.08843 6.58640 6.75201 6.89867 7.17072 7.29595 8.75454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.004213 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.354237 B = 6645.180180 C = 7108.234787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.226 3.774 3 N -0.534 5.534 4 C 0.335 3.665 5 C -0.029 4.029 6 C -0.135 4.135 7 C -0.136 4.136 8 N -0.525 5.525 9 C 0.193 3.807 10 C -0.258 4.258 11 C 0.558 3.442 12 O -0.569 6.569 13 N -0.694 5.694 14 C 0.236 3.764 15 H 0.036 0.964 16 C -0.142 4.142 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.035 3.965 20 N -0.928 5.928 21 Si 0.925 3.075 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.252 1.252 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.193 0.807 36 H 0.404 0.596 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 20.753 3.699 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 N -0.248 5.248 4 C 0.069 3.931 5 C -0.050 4.050 6 C -0.193 4.193 7 C -0.194 4.194 8 N -0.239 5.239 9 C 0.025 3.975 10 C -0.266 4.266 11 C 0.344 3.656 12 O -0.450 6.450 13 N -0.343 5.343 14 C 0.132 3.868 15 H 0.054 0.946 16 C -0.201 4.201 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.166 4.166 20 N -0.566 5.566 21 Si 0.750 3.250 22 H -0.200 1.200 23 H -0.204 1.204 24 H -0.176 1.176 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.210 0.790 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.952 21.374 3.527 21.750 hybrid contribution -0.665 -1.614 -0.478 1.810 sum 1.287 19.759 3.049 20.034 Atomic orbital electron populations 1.21010 0.85937 1.04549 1.04564 1.22220 0.98766 0.86534 0.84528 1.68331 1.10010 1.29384 1.17107 1.24136 0.86526 0.95959 0.86455 1.20221 0.97367 0.88696 0.98682 1.21775 0.99066 1.03843 0.94654 1.21778 0.99094 1.03850 0.94704 1.68299 1.41063 0.98382 1.16150 1.23864 0.90628 0.97292 0.85674 1.21614 0.96900 0.95629 1.12448 1.18074 0.86868 0.83806 0.76837 1.90671 1.14600 1.87467 1.52295 1.46338 1.11193 1.05614 1.71166 1.18964 0.92677 0.80421 0.94703 0.94572 1.22123 1.00037 1.00179 0.97759 1.21172 0.96249 1.05934 1.33324 0.92345 1.25597 1.01040 0.94821 0.95148 1.69973 1.38061 1.09810 1.38795 0.86072 0.81566 0.77581 0.79793 1.20021 1.20439 1.17617 0.89264 0.88808 0.89035 0.87665 0.88972 0.92134 0.93395 0.93615 0.88924 0.92158 0.79030 0.76022 0.94210 0.92992 0.92369 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.79 8.99 71.23 0.64 -2.15 16 2 C 0.23 6.70 6.86 42.92 0.29 7.00 16 3 N -0.53 -14.85 10.22 -175.03 -1.79 -16.64 16 4 C 0.34 8.49 6.34 138.71 0.88 9.37 16 5 C -0.03 -0.53 3.25 -11.54 -0.04 -0.56 16 6 C -0.14 -2.01 9.09 71.98 0.65 -1.36 16 7 C -0.14 -2.10 9.08 71.98 0.65 -1.45 16 8 N -0.52 -13.82 9.77 -186.78 -1.82 -15.64 16 9 C 0.19 5.20 10.80 85.07 0.92 6.12 16 10 C -0.26 -7.99 5.91 -19.91 -0.12 -8.11 16 11 C 0.56 20.51 7.69 86.78 0.67 21.18 16 12 O -0.57 -23.63 13.20 -3.90 -0.05 -23.68 16 13 N -0.69 -26.27 5.02 -449.01 -2.26 -28.53 16 14 C 0.24 10.62 2.24 44.24 0.10 10.72 16 15 H 0.04 1.77 4.67 -2.38 -0.01 1.76 16 16 C -0.14 -5.82 9.47 71.98 0.68 -5.13 16 17 C -0.53 -27.54 9.04 25.60 0.23 -27.31 16 18 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 19 C 0.03 1.90 5.47 84.66 0.46 2.36 16 20 N -0.93 -54.12 13.96 21.45 0.30 -53.82 16 21 Si 0.93 43.23 27.02 68.60 1.85 45.08 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.25 -11.39 6.77 99.48 0.67 -10.72 16 25 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.09 2.84 5.97 -2.39 -0.01 2.82 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 1.70 8.09 -2.39 -0.02 1.68 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.01 8.01 -2.39 -0.02 1.00 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 35 H 0.19 4.28 6.58 -2.91 -0.02 4.26 16 36 H 0.40 13.24 6.77 -92.71 -0.63 12.61 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -64.01 332.15 2.65 -61.36 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.39 Total: 21.20 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.03 Total: 10.67 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.57 Total: -114.64 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.85 Total: 45.08 kcal Total: -64.01 2.65 -61.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.461 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds