Wall clock time and date at job start Mon Mar 30 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32155 * 120.53977 * 2 1 4 4 C 1.31857 * 120.96953 * 179.97438 * 3 2 1 5 5 C 1.50699 * 118.95077 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46760 * 120.00407 * 5 4 3 7 7 C 1.52998 * 109.47339 * 240.00037 * 5 4 3 8 8 N 1.31882 * 122.09454 * 0.28239 * 4 3 2 9 9 C 1.32130 * 120.96557 * 359.43136 * 8 4 3 10 10 C 1.39933 * 120.53746 * 179.97438 * 2 1 3 11 11 C 1.47836 * 120.93694 * 0.05242 * 10 2 1 12 12 O 1.21552 * 120.00222 * 6.04146 * 11 10 2 13 13 N 1.34776 * 119.99846 * 186.05048 * 11 10 2 14 14 C 1.46495 * 120.00145 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47585 * 325.00173 * 14 13 11 16 16 C 1.53002 * 109.46877 * 84.99946 * 14 13 11 17 17 C 1.50695 * 109.47371 * 204.99758 * 14 13 11 18 18 H 1.08005 * 120.00065 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00264 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00310 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.46910 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46902 * 120.00044 * 21 19 17 24 24 H 1.48496 * 109.47396 * 240.00200 * 21 19 17 25 25 H 1.08998 * 109.47092 * 96.33222 * 1 2 3 26 26 H 1.09000 * 109.47334 * 216.32760 * 1 2 3 27 27 H 1.09004 * 109.47201 * 336.32773 * 1 2 3 28 28 H 1.08999 * 109.47534 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47255 * 299.99796 * 6 5 4 30 30 H 1.09004 * 109.46534 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47107 * 60.00531 * 6 5 4 32 32 H 1.09004 * 109.47580 * 300.00681 * 7 5 4 33 33 H 1.09002 * 109.46813 * 60.00231 * 7 5 4 34 34 H 1.09004 * 109.47650 * 179.97438 * 7 5 4 35 35 H 1.07998 * 120.53774 * 180.25602 * 9 8 4 36 36 H 0.97006 * 119.99745 * 359.97438 * 13 11 10 37 37 H 1.09000 * 109.47711 * 59.99880 * 16 14 13 38 38 H 1.09000 * 109.47191 * 180.02562 * 16 14 13 39 39 H 1.08997 * 109.47325 * 299.99733 * 16 14 13 40 40 H 0.96999 * 119.99800 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1481 0.0005 5 6 4.2166 2.4722 -0.0001 6 6 5.0934 2.5767 1.2494 7 6 5.0943 2.5752 -1.2490 8 7 4.2061 0.0361 -0.0045 9 6 3.6164 -1.1462 0.0010 10 6 2.2180 -1.2052 0.0005 11 6 1.5120 -2.5041 0.0000 12 8 0.3021 -2.5382 -0.1118 13 7 2.2099 -3.6505 0.1235 14 6 1.5103 -4.9376 0.1235 15 1 0.5465 -4.8274 0.6205 16 6 1.2906 -5.3986 -1.3188 17 6 2.3395 -5.9601 0.8568 18 1 3.2927 -5.6794 1.2802 19 6 1.8820 -7.2543 0.9864 20 7 0.7221 -7.5965 0.4696 21 14 2.9103 -8.5219 1.8948 22 1 4.1639 -7.8888 2.3772 23 1 2.1421 -9.0439 3.0536 24 1 3.2419 -9.6406 0.9763 25 1 -0.3633 -0.1133 -1.0214 26 1 -0.3634 -0.8279 0.6088 27 1 -0.3634 0.9412 0.4126 28 1 3.4872 3.2822 -0.0005 29 1 4.4682 2.5034 2.1392 30 1 5.6142 3.5342 1.2487 31 1 5.8229 1.7668 1.2501 32 1 5.8238 1.7652 -1.2484 33 1 4.4696 2.5007 -2.1392 34 1 5.6145 3.5331 -1.2498 35 1 4.2038 -2.0525 0.0010 36 1 3.1755 -3.6232 0.2125 37 1 2.2543 -5.5089 -1.8159 38 1 0.7697 -6.3560 -1.3188 39 1 0.6908 -4.6591 -1.8492 40 1 0.4004 -8.5071 0.5604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878536309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:56 Heat of formation + Delta-G solvation = -7.277787 kcal Electronic energy + Delta-G solvation = -21317.495623 eV Core-core repulsion = 18131.854444 eV Total energy + Delta-G solvation = -3185.641179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31028 -38.85152 -35.86543 -35.06115 -34.17258 -32.54417 -31.70447 -29.39393 -27.93765 -27.35507 -25.35167 -25.10718 -23.32349 -21.78325 -20.40956 -19.73402 -17.87682 -17.79286 -16.30996 -15.76220 -15.47036 -15.17723 -14.47736 -14.43706 -14.18380 -14.03862 -13.42212 -13.20371 -13.11130 -12.70331 -12.49321 -12.30094 -12.27240 -11.90370 -11.77739 -11.39810 -11.22180 -11.13473 -11.10645 -11.01841 -10.82176 -10.50802 -10.34057 -10.29828 -9.36654 -9.28149 -9.10476 -9.09699 -8.62669 -8.03842 -6.18628 -4.28313 0.55600 1.05551 3.20302 3.23274 3.28595 3.30974 3.65814 3.85754 3.92812 4.03286 4.31636 4.44826 4.79359 4.84534 4.93133 4.93826 5.14161 5.27874 5.39378 5.44922 5.55331 5.65721 5.66290 5.74256 5.81330 5.91517 6.02823 6.06785 6.26042 6.48101 6.74525 6.88327 6.95849 7.06329 7.31688 7.45045 7.61268 7.82462 8.03888 8.07007 8.49915 8.67721 8.93044 9.39252 10.87369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.003966 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.845060 B = 7058.239208 C = 7725.882560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.230 3.770 3 N -0.526 5.526 4 C 0.335 3.665 5 C -0.027 4.027 6 C -0.141 4.141 7 C -0.140 4.140 8 N -0.522 5.522 9 C 0.183 3.817 10 C -0.239 4.239 11 C 0.553 3.447 12 O -0.539 6.539 13 N -0.698 5.698 14 C 0.265 3.735 15 H 0.052 0.948 16 C -0.148 4.148 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.882 5.882 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.173 0.827 36 H 0.387 0.613 37 H 0.027 0.973 38 H 0.092 0.908 39 H 0.015 0.985 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 16.809 -1.302 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.084 3.916 3 N -0.240 5.240 4 C 0.068 3.932 5 C -0.047 4.047 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.236 5.236 9 C 0.016 3.984 10 C -0.246 4.246 11 C 0.337 3.663 12 O -0.419 6.419 13 N -0.346 5.346 14 C 0.163 3.837 15 H 0.070 0.930 16 C -0.206 4.206 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.190 0.810 36 H 0.220 0.780 37 H 0.046 0.954 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.352 17.428 -1.404 18.602 hybrid contribution 0.622 -1.679 0.459 1.848 sum 6.974 15.749 -0.946 17.250 Atomic orbital electron populations 1.21073 0.86586 1.04199 1.04758 1.21990 0.98094 0.86405 0.85118 1.68209 1.09428 1.30035 1.16360 1.23305 0.86613 0.94651 0.88636 1.19987 0.96943 0.90432 0.97380 1.21795 0.99585 1.02635 0.95856 1.21793 0.99582 1.02630 0.95848 1.68149 1.41275 0.98364 1.15791 1.23512 0.91190 0.96280 0.87453 1.21943 0.96204 0.97193 1.09274 1.17735 0.87175 0.83140 0.78262 1.90692 1.13340 1.86917 1.50949 1.46510 1.10355 1.07154 1.70558 1.18827 0.93752 0.77077 0.93997 0.93011 1.22088 0.99162 1.02396 0.96977 1.21232 1.05565 0.94501 1.36143 0.91953 1.24880 0.95117 0.98274 0.95351 1.69905 1.18746 1.19238 1.44065 0.86380 0.80130 0.81093 0.79434 1.19695 1.20831 1.20818 0.89314 0.87178 0.91077 0.88640 0.92749 0.91632 0.91307 0.91297 0.92795 0.91633 0.81017 0.77951 0.95385 0.88962 0.96547 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.99 36.00 0.32 -1.26 16 2 C 0.23 3.65 6.86 -81.82 -0.56 3.09 16 3 N -0.53 -7.92 10.22 -6.68 -0.07 -7.98 16 4 C 0.33 4.61 6.34 -157.07 -1.00 3.61 16 5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.58 16 6 C -0.14 -1.26 9.09 37.16 0.34 -0.92 16 7 C -0.14 -1.25 9.08 37.16 0.34 -0.91 16 8 N -0.52 -7.36 9.77 -10.39 -0.10 -7.46 16 9 C 0.18 2.62 10.80 -16.78 -0.18 2.44 16 10 C -0.24 -3.92 5.91 -104.69 -0.62 -4.54 16 11 C 0.55 10.80 7.69 -12.33 -0.09 10.71 16 12 O -0.54 -11.95 13.20 5.32 0.07 -11.88 16 13 N -0.70 -14.02 5.03 -55.89 -0.28 -14.30 16 14 C 0.26 6.50 2.56 -69.09 -0.18 6.32 16 15 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 17 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -24.27 11.32 55.43 0.63 -23.64 16 21 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.11 1.80 5.96 -51.93 -0.31 1.49 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.17 2.05 6.58 -52.49 -0.35 1.70 16 36 H 0.39 6.66 6.71 -40.82 -0.27 6.38 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -29.50 332.44 -7.56 -37.05 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.81 Total: 5.66 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.98 Total: 2.33 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.18 Total: -53.38 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.50 -7.56 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.774 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds