Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32155 * 120.53977 * 2 1 4 4 C 1.31857 * 120.96953 * 179.97438 * 3 2 1 5 5 C 1.50699 * 118.95077 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46760 * 120.00407 * 5 4 3 7 7 C 1.52998 * 109.47339 * 240.00037 * 5 4 3 8 8 N 1.31882 * 122.09454 * 0.28239 * 4 3 2 9 9 C 1.32130 * 120.96557 * 359.43136 * 8 4 3 10 10 C 1.39933 * 120.53746 * 179.97438 * 2 1 3 11 11 C 1.47836 * 120.93694 * 0.05242 * 10 2 1 12 12 O 1.21552 * 120.00222 * 6.04146 * 11 10 2 13 13 N 1.34776 * 119.99846 * 186.05048 * 11 10 2 14 14 C 1.46495 * 120.00145 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47585 * 325.00173 * 14 13 11 16 16 C 1.53002 * 109.46877 * 84.99946 * 14 13 11 17 17 C 1.50695 * 109.47371 * 204.99758 * 14 13 11 18 18 H 1.08005 * 120.00065 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00264 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00310 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.46910 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46902 * 120.00044 * 21 19 17 24 24 H 1.48496 * 109.47396 * 240.00200 * 21 19 17 25 25 H 1.08998 * 109.47092 * 96.33222 * 1 2 3 26 26 H 1.09000 * 109.47334 * 216.32760 * 1 2 3 27 27 H 1.09004 * 109.47201 * 336.32773 * 1 2 3 28 28 H 1.08999 * 109.47534 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47255 * 299.99796 * 6 5 4 30 30 H 1.09004 * 109.46534 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47107 * 60.00531 * 6 5 4 32 32 H 1.09004 * 109.47580 * 300.00681 * 7 5 4 33 33 H 1.09002 * 109.46813 * 60.00231 * 7 5 4 34 34 H 1.09004 * 109.47650 * 179.97438 * 7 5 4 35 35 H 1.07998 * 120.53774 * 180.25602 * 9 8 4 36 36 H 0.97006 * 119.99745 * 359.97438 * 13 11 10 37 37 H 1.09000 * 109.47711 * 59.99880 * 16 14 13 38 38 H 1.09000 * 109.47191 * 180.02562 * 16 14 13 39 39 H 1.08997 * 109.47325 * 299.99733 * 16 14 13 40 40 H 0.96999 * 119.99800 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1382 0.0000 4 6 3.4970 1.1481 0.0005 5 6 4.2166 2.4722 -0.0001 6 6 5.0934 2.5767 1.2494 7 6 5.0943 2.5752 -1.2490 8 7 4.2061 0.0361 -0.0045 9 6 3.6164 -1.1462 0.0010 10 6 2.2180 -1.2052 0.0005 11 6 1.5120 -2.5041 0.0000 12 8 0.3021 -2.5382 -0.1118 13 7 2.2099 -3.6505 0.1235 14 6 1.5103 -4.9376 0.1235 15 1 0.5465 -4.8274 0.6205 16 6 1.2906 -5.3986 -1.3188 17 6 2.3395 -5.9601 0.8568 18 1 3.2927 -5.6794 1.2802 19 6 1.8820 -7.2543 0.9864 20 7 0.7221 -7.5965 0.4696 21 14 2.9103 -8.5219 1.8948 22 1 4.1639 -7.8888 2.3772 23 1 2.1421 -9.0439 3.0536 24 1 3.2419 -9.6406 0.9763 25 1 -0.3633 -0.1133 -1.0214 26 1 -0.3634 -0.8279 0.6088 27 1 -0.3634 0.9412 0.4126 28 1 3.4872 3.2822 -0.0005 29 1 4.4682 2.5034 2.1392 30 1 5.6142 3.5342 1.2487 31 1 5.8229 1.7668 1.2501 32 1 5.8238 1.7652 -1.2484 33 1 4.4696 2.5007 -2.1392 34 1 5.6145 3.5331 -1.2498 35 1 4.2038 -2.0525 0.0010 36 1 3.1755 -3.6232 0.2125 37 1 2.2543 -5.5089 -1.8159 38 1 0.7697 -6.3560 -1.3188 39 1 0.6908 -4.6591 -1.8492 40 1 0.4004 -8.5071 0.5604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878536309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -25.597449 kcal Electronic energy + Delta-G solvation = -21318.290024 eV Core-core repulsion = 18131.854444 eV Total energy + Delta-G solvation = -3186.435579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50102 -40.41052 -37.06070 -36.55638 -35.44898 -34.32266 -32.95695 -31.05569 -29.31804 -28.04180 -27.34350 -26.30192 -24.45027 -23.42411 -21.63502 -21.25305 -19.47204 -19.01217 -17.80092 -17.22127 -16.97803 -16.63884 -16.15882 -15.55929 -15.30478 -15.14142 -15.00262 -14.44651 -14.26853 -14.21520 -13.72786 -13.66278 -13.43538 -13.11789 -12.95513 -12.88749 -12.86752 -12.71418 -12.28111 -12.22061 -12.15310 -12.09744 -11.87155 -11.65948 -11.10472 -10.71182 -10.60496 -10.57827 -10.42144 -9.79244 -8.18195 -6.35309 -0.65758 -0.12193 1.44987 1.46697 1.57988 1.82842 2.23859 2.47458 2.64075 2.70666 2.89606 3.13083 3.28336 3.65981 3.84842 3.92349 4.06225 4.17631 4.44441 4.50551 4.64472 4.74518 4.75473 4.83636 4.86981 4.92035 4.95658 5.01685 5.08092 5.12411 5.28549 5.34037 5.42288 5.43334 5.57210 5.66091 5.79148 5.87082 6.08376 6.70579 6.80916 6.90601 7.26885 7.42265 8.88246 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.003966 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.845060 B = 7058.239208 C = 7725.882560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.225 3.775 3 N -0.533 5.533 4 C 0.334 3.666 5 C -0.029 4.029 6 C -0.136 4.136 7 C -0.135 4.135 8 N -0.523 5.523 9 C 0.194 3.806 10 C -0.257 4.257 11 C 0.555 3.445 12 O -0.571 6.571 13 N -0.695 5.695 14 C 0.272 3.728 15 H 0.006 0.994 16 C -0.135 4.135 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.017 3.983 20 N -0.916 5.916 21 Si 0.971 3.029 22 H -0.260 1.260 23 H -0.285 1.285 24 H -0.279 1.279 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.196 0.804 36 H 0.403 0.597 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.014 0.986 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 18.191 -1.005 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 N -0.248 5.248 4 C 0.068 3.932 5 C -0.050 4.050 6 C -0.194 4.194 7 C -0.193 4.193 8 N -0.237 5.237 9 C 0.026 3.974 10 C -0.265 4.265 11 C 0.341 3.659 12 O -0.453 6.453 13 N -0.344 5.344 14 C 0.169 3.831 15 H 0.024 0.976 16 C -0.194 4.194 17 C -0.585 4.585 18 H 0.093 0.907 19 C -0.184 4.184 20 N -0.554 5.554 21 Si 0.796 3.204 22 H -0.184 1.184 23 H -0.211 1.211 24 H -0.205 1.205 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.213 0.787 36 H 0.239 0.761 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.803 18.847 -1.108 20.831 hybrid contribution -0.134 -1.991 0.358 2.027 sum 8.670 16.856 -0.750 18.970 Atomic orbital electron populations 1.20991 0.86197 1.04361 1.04528 1.22177 0.98657 0.86634 0.84639 1.68320 1.10091 1.29307 1.17106 1.24151 0.86479 0.96030 0.86514 1.20222 0.97359 0.88628 0.98749 1.21778 0.99073 1.03878 0.94634 1.21776 0.99068 1.03875 0.94617 1.68299 1.40933 0.98315 1.16130 1.23865 0.90412 0.97380 0.85695 1.21625 0.97051 0.95478 1.12324 1.18105 0.86847 0.83916 0.77005 1.90681 1.14931 1.87526 1.52158 1.46194 1.11041 1.06028 1.71088 1.18419 0.92168 0.78913 0.93560 0.97578 1.21912 0.99423 1.01022 0.97011 1.21562 1.05994 0.94850 1.36136 0.90749 1.25753 0.96128 1.00375 0.96099 1.70046 1.20383 1.19700 1.45270 0.85314 0.78797 0.78421 0.77914 1.18367 1.21075 1.20481 0.89173 0.89313 0.89006 0.87760 0.93558 0.88934 0.92046 0.92026 0.93569 0.88939 0.78732 0.76101 0.94050 0.91309 0.96682 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 8.99 71.23 0.64 -2.39 16 2 C 0.23 7.03 6.86 42.92 0.29 7.33 16 3 N -0.53 -15.35 10.22 -175.03 -1.79 -17.14 16 4 C 0.33 8.58 6.34 138.70 0.88 9.46 16 5 C -0.03 -0.53 3.25 -11.54 -0.04 -0.56 16 6 C -0.14 -2.05 9.09 71.98 0.65 -1.39 16 7 C -0.14 -2.03 9.08 71.98 0.65 -1.38 16 8 N -0.52 -13.73 9.77 -186.80 -1.82 -15.55 16 9 C 0.19 5.26 10.80 85.07 0.92 6.17 16 10 C -0.26 -8.32 5.91 -19.91 -0.12 -8.44 16 11 C 0.56 21.98 7.69 86.78 0.67 22.65 16 12 O -0.57 -26.25 13.20 -3.88 -0.05 -26.30 16 13 N -0.69 -27.91 5.03 -449.01 -2.26 -30.17 16 14 C 0.27 13.64 2.56 44.25 0.11 13.75 16 15 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 16 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 17 C -0.55 -28.06 8.73 25.60 0.22 -27.84 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C 0.02 0.88 5.30 84.66 0.45 1.33 16 20 N -0.92 -51.31 11.32 21.45 0.24 -51.07 16 21 Si 0.97 41.08 29.54 68.60 2.03 43.11 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 25 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.09 3.01 5.96 -2.39 -0.01 3.00 16 27 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 1.03 8.01 -2.39 -0.02 1.01 16 32 H 0.06 1.03 8.00 -2.38 -0.02 1.01 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.20 4.20 6.58 -2.91 -0.02 4.18 16 36 H 0.40 13.41 6.71 -92.70 -0.62 12.78 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 39 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -64.00 332.44 2.78 -61.22 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.43 Total: 23.18 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 6.01 Total: 12.72 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.63 Total: -113.93 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.00 2.78 -61.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.623 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds