Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32158 * 120.53480 * 2 1 4 4 C 1.31858 * 120.96687 * 179.97438 * 3 2 1 5 5 C 1.50700 * 118.95363 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47024 * 119.99898 * 5 4 3 7 7 C 1.53006 * 109.46796 * 239.99813 * 5 4 3 8 8 N 1.31885 * 122.09137 * 0.25431 * 4 3 2 9 9 C 1.32134 * 120.96890 * 359.47879 * 8 4 3 10 10 C 1.39927 * 120.53631 * 179.97438 * 2 1 3 11 11 C 1.47832 * 120.94088 * 0.02562 * 10 2 1 12 12 O 1.21558 * 119.99754 * 6.09713 * 11 10 2 13 13 N 1.34770 * 119.99860 * 186.09485 * 11 10 2 14 14 C 1.46508 * 119.99697 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46925 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46860 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00348 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99980 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00083 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99754 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47275 * 90.00064 * 20 18 16 22 22 H 1.48502 * 109.47293 * 209.99650 * 20 18 16 23 23 H 1.48498 * 109.47418 * 330.00342 * 20 18 16 24 24 H 1.08999 * 109.46835 * 96.33495 * 1 2 3 25 25 H 1.08993 * 109.47151 * 216.33023 * 1 2 3 26 26 H 1.08999 * 109.46830 * 336.33354 * 1 2 3 27 27 H 1.08992 * 109.47263 * 359.97438 * 5 4 3 28 28 H 1.09004 * 109.47119 * 60.00109 * 6 5 4 29 29 H 1.08990 * 109.47405 * 299.99828 * 6 5 4 30 30 H 1.08997 * 109.46814 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.46930 * 299.99898 * 7 5 4 32 32 H 1.08997 * 109.46918 * 59.99921 * 7 5 4 33 33 H 1.08997 * 109.47104 * 179.97438 * 7 5 4 34 34 H 1.08005 * 120.53981 * 180.25950 * 9 8 4 35 35 H 0.96998 * 120.00333 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.47268 * 299.99837 * 14 13 11 37 37 H 1.08997 * 109.47203 * 60.00004 * 14 13 11 38 38 H 1.09002 * 109.46749 * 299.99829 * 15 14 13 39 39 H 1.08997 * 109.47442 * 59.99825 * 15 14 13 40 40 H 0.96997 * 119.99958 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1482 0.0005 5 6 4.2166 2.4724 -0.0001 6 6 5.0934 2.5769 1.2494 7 6 5.0944 2.5751 -1.2491 8 7 4.2062 0.0362 -0.0039 9 6 3.6164 -1.1462 0.0012 10 6 2.2180 -1.2052 0.0005 11 6 1.5121 -2.5041 0.0006 12 8 0.3022 -2.5383 -0.1117 13 7 2.2100 -3.6503 0.1250 14 6 1.5105 -4.9376 0.1244 15 6 2.5271 -6.0705 0.2790 16 6 1.8076 -7.3946 0.2778 17 1 0.7327 -7.4251 0.1773 18 6 2.5215 -8.5673 0.4050 19 7 1.8935 -9.7229 0.4045 20 14 4.3807 -8.5147 0.5781 21 1 4.7418 -8.4299 2.0161 22 1 4.9675 -9.7467 -0.0077 23 1 4.9110 -7.3257 -0.1363 24 1 -0.3633 -0.1134 -1.0214 25 1 -0.3633 -0.8278 0.6088 26 1 -0.3633 0.9412 0.4125 27 1 3.4873 3.2822 -0.0014 28 1 5.8229 1.7669 1.2502 29 1 4.4681 2.5037 2.1391 30 1 5.6141 3.5344 1.2487 31 1 5.8239 1.7652 -1.2482 32 1 4.4698 2.5006 -2.1393 33 1 5.6145 3.5330 -1.2499 34 1 4.2040 -2.0525 0.0017 35 1 3.1754 -3.6230 0.2149 36 1 0.8044 -4.9678 0.9543 37 1 0.9718 -5.0579 -0.8155 38 1 3.2334 -6.0405 -0.5506 39 1 3.0654 -5.9500 1.2191 40 1 2.3958 -10.5478 0.4943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879450018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = -30.210187 kcal Electronic energy + Delta-G solvation = -20805.170809 eV Core-core repulsion = 17618.535207 eV Total energy + Delta-G solvation = -3186.635603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54992 -40.52554 -37.00450 -36.59867 -35.46873 -34.73765 -33.12550 -31.94661 -29.68506 -28.05569 -27.12284 -25.91898 -24.45904 -22.80205 -22.22649 -21.28938 -19.26524 -18.85404 -18.78519 -17.22551 -16.90924 -16.60866 -16.18091 -16.09355 -15.44381 -15.22404 -15.07029 -14.94155 -14.58616 -14.31080 -14.17475 -13.67871 -13.48336 -13.34454 -13.06219 -12.98123 -12.96359 -12.27048 -12.18870 -12.15908 -12.15174 -11.88518 -11.76040 -11.68844 -11.50296 -10.82137 -10.78197 -10.65656 -10.44390 -10.07218 -8.29329 -6.36566 -0.71615 -0.13246 1.40339 1.42629 1.53511 1.68814 2.01986 2.37489 2.58707 2.66380 2.87587 3.06159 3.24329 3.55646 3.76702 3.86566 4.04027 4.16125 4.33881 4.40613 4.43609 4.50136 4.63434 4.73003 4.75501 4.82421 4.85892 4.94447 4.97303 5.05867 5.14143 5.28473 5.32760 5.39556 5.41206 5.41879 5.62959 5.76928 6.22046 6.44224 6.71745 6.87687 7.08452 7.28151 8.87389 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.003528 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.018235 B = 7933.736124 C = 8882.861836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.227 3.773 3 N -0.535 5.535 4 C 0.338 3.662 5 C -0.031 4.031 6 C -0.136 4.136 7 C -0.136 4.136 8 N -0.525 5.525 9 C 0.195 3.805 10 C -0.260 4.260 11 C 0.565 3.435 12 O -0.561 6.561 13 N -0.707 5.707 14 C 0.146 3.854 15 C -0.015 4.015 16 C -0.538 4.538 17 H 0.031 0.969 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.957 3.043 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.234 1.234 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.355 26.672 -0.452 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.250 5.250 4 C 0.072 3.928 5 C -0.051 4.051 6 C -0.194 4.194 7 C -0.194 4.194 8 N -0.239 5.239 9 C 0.028 3.972 10 C -0.268 4.268 11 C 0.351 3.649 12 O -0.441 6.441 13 N -0.359 5.359 14 C 0.023 3.977 15 C -0.053 4.053 16 C -0.576 4.576 17 H 0.049 0.951 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.157 1.157 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.218 0.782 35 H 0.249 0.751 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.978 27.318 -0.529 28.760 hybrid contribution 0.041 -1.775 0.092 1.778 sum 9.018 25.543 -0.437 27.092 Atomic orbital electron populations 1.21026 0.86092 1.04524 1.04637 1.22216 0.98697 0.86656 0.84343 1.68340 1.10061 1.29492 1.17101 1.24108 0.86469 0.95995 0.86184 1.20221 0.97371 0.88801 0.98689 1.21774 0.99093 1.03861 0.94651 1.21777 0.99095 1.03859 0.94659 1.68311 1.40997 0.98430 1.16117 1.23953 0.90395 0.97473 0.85394 1.21509 0.96981 0.95218 1.13078 1.17982 0.86678 0.83678 0.76528 1.90729 1.14777 1.87438 1.51181 1.45934 1.11567 1.05447 1.72922 1.21114 0.95290 0.80727 1.00580 1.19678 0.95503 0.91936 0.98165 1.21252 0.94362 0.91271 1.50757 0.95109 1.26074 1.04802 0.94589 0.93865 1.70075 1.38622 0.98672 1.51775 0.85574 0.78278 0.78832 0.79422 1.19072 1.21479 1.15687 0.89044 0.88907 0.89195 0.87838 0.91962 0.93473 0.89126 0.91959 0.93536 0.89115 0.78236 0.75137 0.93122 0.93098 0.94301 0.94509 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 8.99 71.24 0.64 -1.88 16 2 C 0.23 5.85 6.87 42.92 0.29 6.15 16 3 N -0.54 -13.13 10.22 -175.02 -1.79 -14.92 16 4 C 0.34 7.38 6.34 138.70 0.88 8.26 16 5 C -0.03 -0.46 3.25 -11.54 -0.04 -0.50 16 6 C -0.14 -1.70 9.09 71.98 0.65 -1.05 16 7 C -0.14 -1.72 9.08 71.98 0.65 -1.06 16 8 N -0.52 -11.41 9.77 -186.79 -1.82 -13.24 16 9 C 0.20 4.11 10.80 85.07 0.92 5.02 16 10 C -0.26 -6.64 5.91 -19.91 -0.12 -6.76 16 11 C 0.56 17.20 7.73 86.78 0.67 17.87 16 12 O -0.56 -20.56 13.54 -3.90 -0.05 -20.61 16 13 N -0.71 -20.69 5.51 -465.96 -2.57 -23.26 16 14 C 0.15 5.58 5.61 86.38 0.48 6.06 16 15 C -0.02 -0.64 4.16 29.85 0.12 -0.51 16 16 C -0.54 -29.84 9.66 25.60 0.25 -29.59 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 18 C 0.00 0.21 5.47 84.66 0.46 0.68 16 19 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 20 Si 0.96 41.27 27.47 68.60 1.88 43.16 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 2.53 5.96 -2.39 -0.01 2.52 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.44 8.09 -2.39 -0.02 1.43 16 28 H 0.06 0.88 8.01 -2.38 -0.02 0.86 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.88 8.00 -2.39 -0.02 0.86 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.20 2.87 6.58 -2.91 -0.02 2.85 16 35 H 0.41 9.13 6.65 -92.71 -0.62 8.52 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 39 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.84 333.66 2.20 -67.64 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.37 Total: 16.84 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.88 Total: 2.69 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.88 Total: -109.72 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Total: -69.84 2.20 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879450018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.432 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds