Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 110.06616 * 2 1 4 4 C 1.53996 * 109.91726 * 121.20532 * 2 1 3 5 5 H 1.09006 * 110.30750 * 359.11041 * 4 2 1 6 6 C 1.50701 * 110.30882 * 237.04682 * 4 2 1 7 7 C 1.38218 * 120.01139 * 292.80764 * 6 4 2 8 8 C 1.38225 * 120.02479 * 179.97438 * 7 6 4 9 9 C 1.38263 * 120.05405 * 0.02912 * 8 7 6 10 10 C 1.38182 * 120.02228 * 359.97438 * 9 8 7 11 11 C 1.38441 * 120.01518 * 112.53389 * 6 4 2 12 12 F 1.35096 * 120.02288 * 0.02562 * 11 6 4 13 13 C 1.54594 * 105.13993 * 118.12681 * 4 2 1 14 14 C 1.54933 * 102.92161 * 338.04568 * 13 4 2 15 15 N 1.47904 * 109.91802 * 238.79265 * 2 1 3 16 16 C 1.46900 * 110.99752 * 26.49429 * 15 2 1 17 17 C 1.50703 * 109.46664 * 169.99941 * 16 15 2 18 18 H 1.08000 * 120.00532 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99608 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00045 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47006 * 59.99387 * 21 19 17 23 23 H 1.48492 * 109.47527 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46988 * 299.99830 * 21 19 17 25 25 H 1.09005 * 109.47679 * 298.79545 * 1 2 3 26 26 H 1.08998 * 109.47235 * 58.79496 * 1 2 3 27 27 H 1.09000 * 109.47218 * 178.79470 * 1 2 3 28 28 H 1.09003 * 109.47388 * 188.90811 * 3 2 1 29 29 H 1.09000 * 109.47152 * 308.91223 * 3 2 1 30 30 H 1.09000 * 109.46895 * 68.91159 * 3 2 1 31 31 H 1.07999 * 119.98535 * 0.02562 * 7 6 4 32 32 H 1.08004 * 119.97399 * 180.02562 * 8 7 6 33 33 H 1.08001 * 119.99138 * 179.97438 * 9 8 7 34 34 H 1.08000 * 120.00999 * 179.97438 * 10 9 8 35 35 H 1.09004 * 110.72191 * 96.40292 * 13 4 2 36 36 H 1.08998 * 110.72483 * 219.68151 * 13 4 2 37 37 H 1.09000 * 110.66636 * 155.84912 * 14 13 4 38 38 H 1.09001 * 110.66249 * 278.80797 * 14 13 4 39 39 H 1.08998 * 109.46752 * 289.99635 * 16 15 2 40 40 H 1.08997 * 109.46960 * 49.99886 * 16 15 2 41 41 H 0.96998 * 119.99870 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0545 -0.7501 1.2384 5 1 1.2224 -1.1013 1.8487 6 6 2.9555 0.1451 2.0494 7 6 4.1734 0.5489 1.5354 8 6 4.9998 1.3705 2.2789 9 6 4.6096 1.7889 3.5376 10 6 3.3925 1.3864 4.0536 11 6 2.5613 0.5681 3.3073 12 9 1.3689 0.1781 3.8086 13 6 2.8535 -1.9483 0.6762 14 6 2.2660 -2.1193 -0.7472 15 7 2.0338 -0.7205 -1.1894 16 6 1.0591 -0.6703 -2.2873 17 6 1.6963 -1.1933 -3.5488 18 1 2.7228 -1.5290 -3.5364 19 6 0.9692 -1.2423 -4.7193 20 7 -0.2806 -0.8331 -4.7346 21 14 1.7591 -1.8899 -6.2832 22 1 2.1954 -3.2937 -6.0728 23 1 0.7739 -1.8393 -7.3931 24 1 2.9361 -1.0520 -6.6269 25 1 -0.3635 0.4950 0.9006 26 1 -0.3633 0.5324 -0.8790 27 1 -0.3634 -1.0274 -0.0216 28 1 3.1332 1.4301 -0.1591 29 1 1.5732 1.9999 -0.7996 30 1 1.8322 1.9052 0.9588 31 1 4.4790 0.2230 0.5522 32 1 5.9510 1.6858 1.8762 33 1 5.2563 2.4304 4.1178 34 1 3.0882 1.7130 5.0370 35 1 3.9171 -1.7145 0.6290 36 1 2.6803 -2.8424 1.2750 37 1 2.9822 -2.6158 -1.4018 38 1 1.3290 -2.6750 -0.7123 39 1 0.1953 -1.2852 -2.0346 40 1 0.7390 0.3600 -2.4421 41 1 -0.7922 -0.8679 -5.5579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879640772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -15.557270 kcal Electronic energy + Delta-G solvation = -22349.826727 eV Core-core repulsion = 19143.906561 eV Total energy + Delta-G solvation = -3205.920166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.82109 -40.17077 -38.11636 -33.64914 -32.12964 -31.83750 -30.52899 -29.39262 -26.89226 -26.08908 -24.95450 -22.84427 -22.35516 -21.91546 -20.04783 -18.07733 -17.45657 -16.48966 -16.22965 -15.80522 -15.55425 -14.96274 -14.59497 -14.24075 -14.14100 -13.86818 -13.26638 -13.15328 -13.01326 -12.52531 -12.31754 -12.01280 -11.95693 -11.67800 -11.46691 -11.44527 -11.12574 -10.91684 -10.83865 -10.52553 -10.49197 -10.30802 -10.18327 -10.14679 -9.73572 -9.12882 -8.78494 -8.51561 -8.39765 -7.30601 -6.00155 -4.01117 1.19794 1.24562 3.34427 3.38562 3.41359 3.60937 4.30944 4.43918 4.67455 4.71850 4.86249 4.97968 5.14299 5.23014 5.30002 5.36076 5.38150 5.52900 5.70217 5.78169 5.86794 5.95413 6.01236 6.09251 6.12229 6.13830 6.19865 6.38277 6.40838 6.43799 6.43928 6.51708 6.61598 6.66395 6.77002 6.84455 6.94424 7.23681 7.37876 7.82204 8.06063 8.21723 8.56896 9.06519 9.62904 11.10615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.004648 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.261106 B = 6022.132667 C = 6295.153765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 C -0.127 4.127 4 C -0.057 4.057 5 H 0.081 0.919 6 C -0.085 4.085 7 C -0.076 4.076 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.159 4.159 11 C 0.091 3.909 12 F -0.141 7.141 13 C -0.118 4.118 14 C 0.049 3.951 15 N -0.503 5.503 16 C 0.186 3.814 17 C -0.506 4.506 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.037 0.963 39 H -0.003 1.003 40 H 0.030 0.970 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 3.230 16.305 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 C -0.185 4.185 4 C -0.076 4.076 5 H 0.100 0.900 6 C -0.086 4.086 7 C -0.094 4.094 8 C -0.151 4.151 9 C -0.121 4.121 10 C -0.178 4.178 11 C 0.072 3.928 12 F -0.120 7.120 13 C -0.156 4.156 14 C -0.079 4.079 15 N -0.227 5.227 16 C 0.061 3.939 17 C -0.544 4.544 18 H 0.079 0.921 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.048 0.952 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.012 3.480 15.980 18.212 hybrid contribution -0.824 -0.707 -0.535 1.211 sum 7.188 2.773 15.445 17.260 Atomic orbital electron populations 1.22409 0.96260 1.01882 1.01838 1.21694 0.92775 0.94925 0.89856 1.21964 1.01783 0.94730 1.00009 1.21133 0.96541 0.94495 0.95472 0.90026 1.19845 0.96331 0.99571 0.92861 1.21107 0.92394 0.95992 0.99919 1.21198 1.00227 0.98937 0.94739 1.20923 0.95563 0.99640 0.95937 1.21042 0.95501 1.00442 1.00777 1.17597 0.82485 0.99299 0.93386 1.91463 1.43700 1.89522 1.87298 1.22690 0.99876 0.96249 0.96788 1.23020 0.99400 0.92055 0.93474 1.64975 1.44404 1.08768 1.04562 1.19889 0.89263 0.97020 0.87728 1.21134 0.98548 1.41460 0.93283 0.92104 1.24973 0.94854 0.95747 0.98999 1.69947 1.08472 1.47819 1.27690 0.86587 0.78956 0.79383 0.82619 1.20343 1.21427 1.20220 0.93531 0.91037 0.92861 0.91476 0.92880 0.93704 0.84062 0.85553 0.85552 0.85291 0.90748 0.91770 0.90251 0.94467 0.98478 0.95179 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 7.07 37.15 0.26 -2.79 16 2 C 0.10 1.75 0.84 -130.53 -0.11 1.64 16 3 C -0.13 -2.15 7.49 37.16 0.28 -1.87 16 4 C -0.06 -0.89 2.81 -90.41 -0.25 -1.14 16 5 H 0.08 1.29 6.79 -51.93 -0.35 0.93 16 6 C -0.09 -1.18 3.23 -104.55 -0.34 -1.52 16 7 C -0.08 -0.96 6.32 -39.59 -0.25 -1.21 16 8 C -0.13 -1.40 10.04 -39.58 -0.40 -1.80 16 9 C -0.10 -1.01 10.04 -39.59 -0.40 -1.41 16 10 C -0.16 -1.76 10.03 -39.51 -0.40 -2.16 16 11 C 0.09 1.23 7.20 -39.42 -0.28 0.95 16 12 F -0.14 -2.04 16.25 2.25 0.04 -2.01 16 13 C -0.12 -1.78 6.45 -24.87 -0.16 -1.94 16 14 C 0.05 0.92 6.10 -1.90 -0.01 0.91 16 15 N -0.50 -10.55 4.85 -216.43 -1.05 -11.60 16 16 C 0.19 4.76 3.36 -4.97 -0.02 4.75 16 17 C -0.51 -14.10 8.91 -34.44 -0.31 -14.41 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.46 6.48 -51.93 -0.34 1.12 16 27 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 28 H 0.07 1.09 5.56 -51.93 -0.29 0.80 16 29 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.04 0.70 7.10 -51.93 -0.37 0.33 16 31 H 0.14 1.86 6.62 -52.49 -0.35 1.52 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.04 0.74 7.82 -51.93 -0.41 0.33 16 39 H 0.00 -0.07 6.72 -51.93 -0.35 -0.42 16 40 H 0.03 0.83 7.13 -51.93 -0.37 0.46 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -29.56 321.69 -8.98 -38.53 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.05 Total: 0.08 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -2.48 Total: -20.55 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.31 Total: -37.54 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.56 -8.98 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879640772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.977 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds